Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ---------->DOF2            --------->At4g35610         <------ZmHOX2a(2)        <---------ARR11(3)        --------->ARR11(3)                                                                <---------AHL20(2) ----->TOE1(3)     <---------ANAC46                                               --------->At4g35610 ----->TOE2(3)     ----------->GT1                                        <---------AHL20(2) ------>RAV1(2)<-----------HVH21                                          --------->AHL20(2)    <---- -->P  --------->At4g35610                    ---------->DOF2     --------->ICU4  <---------At4g35610 >WRKY18(1) ----------->RAV1(2)     --------->At4g35610          --------->At5g28300      --------->AHL20(2)   ctgaaaaacagatcacctgtgaggtaaagaaattagtttgctccagtcaaaagacatgtttttaggcagtaattgtttaatttcatctgtatttatattt  13922700                  --------->ANAC58                           ---------->DOF2                  --------->ANAC58                         --------->AHL20(2)            --------->LBD16                                <---------AHL20(2)           <---------ANAC46                                --------->YAB1           <---------ANAC58                             --------->YAB1--------->ANAC58           --------->ANAC55(2)                         <---------ATHB51           <---------ANAC58                          --------->YAB1   --------->ANAC58          <---------LBD16                         <-----------GT1     --------->AtLEC2        <-----------GT1                       <---------AHL20(2)     ------->MYC2                >>>>    <---------AHL20(2)                        --------->AHL20(2)     ------->MYC3          ----------    --------->AHL20(2)                       --------->AHL20(2)      <-------MYC2        --------->ANAC46   <---------AHL20(1)                        --------->AHL20(1)      <-------MYC3        --------->ANAC58   --------->AHL20(2)                        <---------AHL20(1)--------->ANAC58          --------->ANAC58   <---------AHL20(2)                        <---------AHL20(2)--------->ANAC58  <---------AHL20(2) -------GT1<---------ANAC55(1)              --------->AHL20(2) --------->ANAC46  --------->AHL20(2)<<   actaaattattttccgtatgaagccataggccgatgttgtcaacaaattaatttacaataataaaaagccacatgcaaacaaattatatatacgaaagtt  13922800                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                       <---------At4g35610                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <---------AHL20(2)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                              <---------YAB1                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                     <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 --------->AHL20(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <---------ICU4   --------->O2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---------YAB1<-----------HVH21  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2)                          <---------ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->bZIP60(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               xxxxxxxxx                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->ATHB51               xxxxxxxxxx                 <---------WOX13(1) <---------YAB1          --------->YAB1                 <xxxxxxxxx              <---------YAB1--------->ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxx              --------->AHL20(2) --------->AHL20(2)         <--------HAHB4     xxxxxxxxxxxxxxxxxxxxxx              <---------AHL20(2) <---------AHL20(2)         <---------ICU4  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------O2 --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >>>>>>WRKY26--------->AHL20(2)  <---------AHL20(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     - >DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC55(2)<---------TOE2(3)      <---------AHL20(2) <<<<<<<<WRKY26  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <--   gatcaactctctccatataattgacacatcattattttattatttgtcatgtgtctatagaataattaatgtaagctcttcaacttctaatttataggtt  13922900                    <-----------GT1                   --------->AHL20(2)           --------->AHL20(2)          <---------YAB1        <---------AHL20(2)       --------->AHL20(2)       --------->ICU4    <---------AHL20(2)   <---------AHL20(1)           <---------------AtSPL8   --------->ARR11(3)   <---------AHL20(1)                         ----------->GT1   <---------ARR11(3) >>>>>>>>>MYB98                          <---------AHL20(1)                   xx   --------->AHL20(1)<-----------GT1                          --------->AHL20(1)                <---- xxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)               --------->AHL20(2)                xxxxx xxxxxxxxxxxxx>smallRNA(le3) <---------AHL20(2)               <---------AHL20(2)           <xxxxxxxxx xxxxxxxxxxxxxxsmallRNA(s2) --------->AHL20(2)               --------->AHL20(2)        xxxxxxxxxxxxxx xxxsmallRNA(i2)   <---------AHL20(2)                 <---------AHL20(2)              <xxxxxxxxxxxxxx >smallRNA(si3)--------->AHL20(2)                 --------->AHL20(2)                  <xxxxxxxxxxxxxx -------->YAB1--------->AHL20(2)--------------->AtSPL8--------->AHL20(2)         <------------CBF xxx -------TOE2(3)<---------AHL20(2)                 <---------AHL20(2)      --------->ZAT6 <---------YAB1   aatgatatatttattatttaatttaacatatttaattgtactattactatatttattttaatattaaattggtttaacacaaacattgtttatgaattat  13923000                                                                 --------->GLK1(2)                                                                 --------->ARR14(2)                                                                <---------GLK1(2)        <------------CBF                                     --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      --------->ANAC55(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                          --------->ANAC58 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         <---------LBD16 -----ANAC46                                      --------->ANAC58 xxxxxxxxxxxxxxx>smallRNA(si3)       <---------YAB1------------>CBF xxxxxxxxxxxxxsmallRNA(si3)         <---------ARR11(3)     <-----------GT1 xxxxxxxxx>smallRNA(se3)            --------->ARR11(3)  <---------ICU4 xxxxxxxxxsmallRNA(si3)            --------->CCA1(1)    --------->YAB1                <---------AHL20(2) xxxxxxxxxsmallRNA(fl3)        --------->AHL20(2) --------->ANAC58*TSS               <---------AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->RVE1(1)   --------->ICU4                --------->AHL20(2)   gtgtatgatgcattgttgagaatgttgttagaaaaaaatatcatttactaattcgcaatagttacggaatctacaaattgttccaaattttttttttttt  13923100                                              ----------->GT1                                           <------ZmHOX2a(1)                                  <------ZmHOX2a(2)                                  ================HOX2a_HOX2a   ------->TEIL                     <--------P   --------->CCA1(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              ---------->DOF2    <---------ARR11(3)        --------->At4g35610          <---------AHL20(2)     --------->AGP1          <-----------RAV1(2)                      ---         --------->AHL20(2)      --------->ARR11(3)     --------->ZAT14               ---------->DOF2         <---------AHL20(2)      --------->ARR14(2)     <---------ZAT14   --------->ALFIN1       ----   ----------->GT1  <-------GAMYB<---------ARR14(2)     <---------At4g35610  ----------->GT1  -------  <---------TOE2(3)<---------MYB46(3)    <---------TOE2(3) <---------At4g35610  ---------->DOF2 <----   tatggaggttattaaatagagcggttgctatggaagatccacttaggaagattaatactgcagatggatgtctaatgtgtggtaaagaaaaagaaacaat  13923200       <---------TOE2(3)     <---------AHL20(2) --------->YAB1 <---------AHL20(2) --------->AHL20(2) ------>WOX13(1)                                                                          <---------- ----->AHL20(2)                                                            <---------HSFB2a(2) -->WOX13(1)                                                               --------->HSFB2a(2) -----ATHB12        <----------DOF2         <----------DOF2    ------>ZmHOX2a(1)       <---------ICU4   caattatataatgtttcagtgtcttttggctagacaaatttgggctctttctctgattccctctccttcgaatggttttagaagttcaatttttacaaat  13923300                                                     --------->CCA1(2)                              -                                                    --------->ARR11(3)                             <-                    ---------->DOF2                 --------->AHL20(1)                             <-                 <-----------HVH21                  <---------ARR11(3)       <----------DOF2       --         <---------ANAC58                       ---------->DOF2       ------>ZmHOX2a(1)            <-         <---------ANAC58                ------>ZmHOX2a(1)    <---------MYB52(1)                 ---- -GT1  <---------YAB1    --------->GLK1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->GT1----   atgtgttatatgcttgatatgtcaaagaatccatgtttgactcctcatataaaagatattagcccttgggtcctatgggctctatggaaaaacataaaca  13923400         <---------TOE1(3)         <---------TOE2(3)     <----------DOF2 ------>TEIL   <---------ANAC58                                      <---------YAB1 --------ARR14(2)                     ---------->DOF2            <---------YAB1 --------GLK1(2)                  <-----------GT1          --------->ATHB12         --------->ALFIN1 ------->ARR14(2)              --------->YAB1             --------->ICU4         --------->GLK1(2) --------ARR11(3)             <---------YAB1              <---------YAB1        <---------GLK1(2) ----->ANAC58  <---------ANAC58<---------ICU4           --------->YAB1        ------->GAMYB ----->ANAC58 <-------TEIL----------->GT1             <-----------HVH21    ----------->RAV1(1)   agaacctctttaagggtgcatgcttagtgagtataattaccaaagtgtatgaagactgtcatgagtgatttttgattcaacagaatttggggctatcttt  13923500                                                                                      ===============                                                                                   ==================                                                                                --------->AtLEC2                                                                                --------->ANAC58    <                                                                          <------MYB46(1)           -                                                                          <------MYB83----------->RAV1(1)                                                                       <---------ANAC46             -                                 <---------At4g35610                   <---------ANAC58        <-----                                 --------->At4g35610        --------->ATHB12    --------->ANAC46    <          <-------TEIL         <---------ZAT14            ----------->RAV1(1)   --------->ANAC58  <--       <------MYB83            --------->ZAT18          --------->ZAT18<---------AtLEC2        <-----       <------MYB46(1)--------->ICU4               ---------->DOF2     <---------ANAC58  <---------ARR11(3) <---------LBD16 ----------->GT1 ------>ZmHOX2a(1)<---------AHL20(2) <---------YAB1----------->RAV1(1)   caaaccggatggtacatgtctgtaaaaatggagtcctctgaaacatggggatttaaagtgcaacattggttttgcttggtccaagcaacaacatatttca  13923600  Previous    Next  AGI:  At5g35736.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13923066    to: 13924028    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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