Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------ZAT14                               <---------At4g35610                  <---------bZIP60(1)                <---------At4g35610  --------->At4g35610             --------->YAB1     <-----------HVH21<----------DOF2  --------->At4g35610        --------->ALFIN1   <---------YAB1   <----------DOF2       --------->ZAT2 <----------DOF2  --------->bZIP60(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxx   gttctttgaagtgtttcatgacttcacttatactagtcagagagtgctttgcttcatcggagaaaatcagcagagcatcagcaaatagcaaatgagttag  13902300                    <---------ZAT18                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    --------->ZAT18                  <---------PCF2                 <---------ANAC58                                                                ----                 <------MYB46(1)                                                              -------                 <------MYB83                                                                --------                 <---------ANAC58              <---------ANAC58         <----------DOF2      --------                <---------MYB46(3)             <---------ANAC58     --------->ZAT14          <-------               --------->ALFIN1    --------->TOE2(3)                --------->ZAT18          --------           ---------->DOF2     <----------DOF2 <---------ANAC46     <---------ZAT18          <-------           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------ZAT14 --------->YAB1 xxxxxxxx>smallRNA(fl3)  --------->YAB1      ------->TEIL<------ZmHOX2a(1) --------->YAB1  ----------   tcttggtgagtcacaaagtgggtgcaatctgaactttccttcatatgtagcttggctgaggagattggagagcactttcatgactataatgaagagatat  13902400      --------->MYB59 ------->GT1                                    --------->ZAT2 -->CCA1(2)                                     --------->STY1(2) ->ARR11(1)                             --------->ANAC58                              ----------->GT1 ->ARR11(3)                <----------DOF2      <---------STY1(2)                 <---------HSFB2a(2) --ARR11(3)       <---------ANAC46 --------->LBD16                                --------->HSFB2a(2) ->ARR14(2)    ----------->HVH21  <---------LBD16                             --------->TOE1(2)    -- --ARR14(2)    <XXXXXXXXXXXXXXXXXXXXMIR161.1    <---------ZAT2                --------->TOE2(2)   --- ->ARR10<-----------HVH21 <---------DAG2--------->ANAC58                      --------->TOE2(3)   ---   ggagaaattgggtcaccttgacgtagtcccttttgccctgggaagaaaccagctagttctccatttacagagatggaaaaccttggagaagtaatacatt  13902500                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                    <------NtERF2                                                                  ---------->CDC5                                                     --------->ANAC58         --------->HSFB2a(2)                         <---------ANAC55(2)                        -----         <---------HSFB2a(2)                         --------->ANAC58                           -----       *TSS  ----------->GT1                         --------->ANAC46        xxxxxxxxxxxxxxxx>smallRNA(i)     --------->TOE1(2)                     <----------DOF2        <---------WRKY12             <-----    --------->ATHB12                      <---------ANAC58       <---------MYB52(1)   ----------->RAV1(2) ---->ZmHOX2a(1)                          <---------ANAC58      <-----------TGA1     --------->ZAT2 ------>TOE1(3)                 <---------TOE2(3)    --------->ANAC55(2) <----------DOF2    <-------- ------>TOE2(3)            ------>NtERF2<-----------GT1         <-----------HVH21    <---------ZAT2   ccttaatccttggagaagtaatacagaggcgactagggttttttgctttctcatcacgcatgataccgtcagcggcttctctgagccagcctggaggttc  13902600                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                  <---------GLK1(1)                                         <---------YAB1      ---------->DOF2     <---------ARR14(2)                                        ------------>CBF<-------GAMYB            <---------ARR14(3)                                       <-----------GT1 <------MYB46(1)           --------->ARR11(3)                                     <-------GAMYB     <---------MYB46(3)        <---------ARR11(3)                                    <---------MYB46(3) <------MYB83              --------->ARR14(2)        ----------->HVH21          <--------P          <---------DEAR3(2)        --------->ARR14(3)      --------->RAP2.6(2)        <---------MYB46(3) ------------>MYB.PH3(1)     --------->GLK1(1) ---->ANAC58                    --------->ALFIN1--------->LBD16               <------ZmHOX2a(1)   <-- ---->ANAC58     --------->GLK1(1)<-------GAMYB<---------HSFC1(1)             ======================= --TEIL--------->At5g28300     <-------MYC3    <---------HSFB2a(2)         *TSS <---------GLK1(1) --- -MYB46(3) <-----------RAV1(2) ------->MYC3    --------->HSFB2a(2)   --------->MYB52(1)          <---   gccagtggccgtaacaggggtttcttctccccatgtggttgttacaattccagaagtcggttagaaagaggtaatggagaggagatctcagtttttggtt  13902700                                                                 ---------->DOF2                                                          ----------->HVH21                                                    <-----------HVH21                                                    <-----------TGA1                                <                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---                         <---------DAG2        <------NtERF2<---------LBD16                      <---                        --------->HSFB2a(1)    <---------At4g35610                   --------->ARR14(2)   ------>ZmHOX2a(2)    <---------HSFB2a(1)    <---------ZAT2 --------->LBD16        <---------ARR14(2) -------HSFB2a(2)     <---------ARR14(2)       --------->At4g35610        --------->YAB1 ------>ZmHOX2a(1) =========HOX2a_HOX2a --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------GLK1(1) ------>HSFB2a(2)<---------ANAC46       <---------ATHB12--------->At4g35610         --------->GLK1(1) ------LBD16<---------ZAT6            --------->WOX13(1)<---------At4g35610     ----------->GT1 -----   cgggatcgaatgtagggttagggggaaccttttcaaaactcaatcaggcagcatcgtcatctcacgggaaagggaatcagaacgggaaatcctcttgggt  13902800                       --------->ANAC46                <---------ARR11(3)                <---------ARR14(2)                --------->ARR14(2)                --------->ARR11(3)                <---------ARR11(1)               --------->GLK1(1)               <---------GLK1(1)         ---------->DOF2      ---------->DOF2   ----------->GT1     --------->ANAC58                      <------ZmHOX2a(1) -----------RAV1(1)    --------->ANAC58                --------->YAB1 ------WRKY12  <---------ARR14(1)               <---------MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------WRKY38(1)<-----------ARR10              <---------TOE1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->WRKY18(1)<---------CCA1(2)               <---------TOE2(2)   <---------ZAT14<------ZmHOX2a(1)   caatgtggcaaaaaagcatatcttcactcaacaaaagtttgtggtatcggaggttaatggtaaggagagagtagtagtaccaaaggatgtgtttgtaggg  13902900                                                             ----------->GT1                      <--                                                          --------->ALFIN1                        <--                                                         ------->MYC3                           -----                             ---------->DOF2             <-------MYC3                           <----                             =====================================bZIP_DOF                     <-----                       --------->ATHB12                 --------->O2                          -------                    <---------ANAC58                    <---------O2                   <---------ARR14(2)                    <---------ANAC58                    <---------TGA1a                --------->ARR11(3)                 --------->GLK1(1)                      --------->TGA1a              ----------->ARR10                 <---------GLK1(1)                      =============================================                <---------ARR11(3)                      =============================================                --------->ARR11(3)                     ------->MYC3          ----------->GT1  <------               <---------HSFB2a(1)                     <-------MYC3      <---------YAB1--------->ARR11(1)               --------->HSFB2a(1)<-------TEIL      <---------ALFIN1<-------TEIL     <---------TOE2(3)         <---------ANAC46   <------ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s)--------->YAB1--------->CCA1(2)   gcaaaactattgtgggaagatttcttgataggaaagttcataaacaccaaggctccacatgtggggaaaattcatatgatagtgaataagatttggaggt  13903000     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   <---------ARR14(2)   --------->ARR14(2)  --------->GLK1(1)  <---------GLK1(1)                                                                   <---------ARR14(2) ----MYB83                                                                            --------->GLK1(2) ----MYB46(1)                                                                         ------->TEIL  < ---->ALFIN1                                                                          <---------ARR11(1) ----P                                                                                --------->ARR14(2) --GAMYB                                         <---------ZAT14                     <---------CCA1(2) -->MYB55(2)                                     --------->ZAT14                     <---------ARR14(1) ====MYC_MYB                               ----------->RAV1(1)   --------->CCA1(2)--------->At4g35610 ==MYC_MYB               ------->TEIL     --------->MYB46(3)  --------->ANAC46    <------NtERF2    <- ---MYB46(3)  <---------DAG2        <---------TOE2(3)  <-------TEIL               <---------At4g35610   tgggagatcggtcttcccttatcgatgtatttgaagttaatgaaaccacagtgaagtttcatataagaaacgagggtatgaggcagcgaatcttgaatag  13903100                           --------->YAB1                          <---------YAB1                   <---------ARR14(2)                  <---------GLK1(1)                                                      --------->ATHB51                  --------->GLK1(1)                                                     --------->ICU4                 ---------->TaMYB80                                                     <---------YAB1                 <---------ARR14(2)                                                   <--------------              <---------ANAC46                                            <---------ATHB12              <---------ANAC55(2)                                     <------NtERF2   ---------------              --------->ANAC55(2)                                    --------->LBD16 <---------------              <---------TOE2(3)                                     --------->ANAC46 <---------------             <---------LBD16             <---------ZAT18           <---------LBD16   ----------------            --------->MYB52(1)           --------->ZAT14     <---------At4g35610     ---------------- ---------ARR14(2)<----------TaMYB80     --------->ZAT18     --------->At4g35610<---------ICU4<------ -----ZmHOX2a(1) --------->ARR14(2) ---------->DOF2       <------ZmHOX2a(1)    <---------ATHB12   aggattgtggaacattacggatatccctatgatagtctcaaagtggactccatttacagaggaagctcacccggcaatgaaatcaataccattatgggtc  13903200  Previous    Next  AGI:  At5g35720.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 6.9e-12 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 13901293    to: 13902507    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g35725.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 4.2e-39 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 13902675    to: 13907477    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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