Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------YAB1                     --------->TOE2(3)                   <---------YAB1             --------->AHL20(2)                                                                <-----             <---------AHL20(2)--------->CCA1(2)                                         <---------AHL20(2)      --------->AHL20(2)      <---------ARR11(3)<---------ANAC55(1)                      --------->AHL20(2)      <---------AHL20(2)      --------->ARR11(3)<---------ANAC46               <---------YAB1 <------  --------->AHL20(2)--------->YAB1----------->GT1              --------->YAB1 <---------AHL20(2) <---------YAB1   --------->ARR11(3)  ---------->DOF2  ----------->GT1   <---------TOE2(3)    ------- --->WRKY38(1)    <---------ARR11(3)  <---------DOF5.7(2)     ----------->GT1 --------->AHL20(2)    <   actattatttaaaatttaaatatcatcaataagatatagttaaagtcattaagtgtatagcaaaatgaaaattctaagattaaaattcgattaaaatttt  13847300                                                                                              <------         <---------AHL20(2)                                                               ------>NtERF2        --------->AHL20(2)                                                                --------->LBD16        <---------AHL20(2)                              <---------YAB1 --------->YAB1    --------->ANAC46 ----AHL20(2)   <---------AHL20(2)                     --------->ARR11(3)            <-----------GT1 ---AHL20(2)<---------AHL20(2)             <-----------GT1   ----------->GT1 <----------DOF2  ------- -->AHL20(2)--------->AHL20(2) <---------YAB1    --------->YAB1   --------->ICU4     <xxxxxxxxxxxxxxx -----------GT1 --------->AHL20(2)  <-----------GT1    <---------ARR11(3)    <---------DAG2  <-------   ttttactaaattaaatatttaaaaatagggattatcatttactatttacaattctaatatcatgggtaaaaattgataactttttttaaacccgcctatc  13847400      <---------MYB59    <---------PCF2   <---------TCP16(2)   ----------->TCP11(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------DAG2               <---------DAG2 --------->ALFIN1       <-----------GT1    <-----------GT1                 <-----------GT1 ---ARR14(2)    <---------ZAT14   <---------WOX13(1)                 <<<<<<<<<<WRKY43 -->ARR14(2)    --------->ZAT14<---------YAB1    <----------DOF2     <<<<<<<<<<WRKY38 xxxxxsmallRNA(le3)  <---------ICU4 <-----------GT1 <-----------GT1  <<<<<<<<<<WRKY26          ------ --CCA1(2) <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ICU4       <----------DOF2  <----------DOF2--------   taggtgggcctaacctagtttactaattactatatgattaacttattaccacttttacttcttcttttttggtcaaattactttattgttttttataaag  13847500                                                                      <------------CBF                                                                     --------->ATHB51                                                                    <---------YAB1                                                                    <---------ATHB51                                                                    --------->ICU4                                                                  --------------->AGL15                                                                  <---------------AGL15                                                                 ====================================                                                                 ----------------->AGL3                                                                 <---------------AGL15                                                                 <-----------------AGL2                                                                 ----------------->AG                                                                 <-----------------AGL1                                                                 ----------------->AGL1                                                                 <-----------------AG                                                                 ====================================                                                                 ------------>ATHB5                                                                 ----------------->AGL2                                                                 <-----------------AGL3                                                   --------->AHL20(1)<---------ICU4                                                   <---------AHL20(1)--------->ATHB12              <-                      --------->YAB1               <---------ARR11(3)-------->ATHB1 --------->ARR11(3)               ----------->GT1        --------->ARR11(3)         --------------->AGL15            ---   <-----------GT1   <---------AHL20(2) --------->TOE2(3)       <-----------------AGL1            --- ----->GT1  <---------AtLEC2          <---------ARR11(3)    <---------DAG2    ----------->GT1   <---- -->DOF2<----------DOF2  --------->YAB1 --------->TOE1(3)<-----------GT1      --------->YAB1---------   tcaaattactctttgcattgtaaataatagtagtaactaaaatcttaaaacaaaatattcaacctttcccattattggaatggtaatgtcttcaacacca  13847600          <---------TOE2(3)          <---------TOE1(3)       --------->DOF5.7(2)      --------->TOE2(3)    <---------YAB1      --------->TOE1(3)   --------->AHL20(1)    ------>MYB46(1)       <---------AHL20(1)    ------>MYB83<---------ARR11(3)   --------->MYB52(1)    <---------------AGL15 --------->MYB46(3)     <-----------------AGL3 ========================================MADS_MADS =========================================MADS_MADS --------WRKY18(1)   --------->AHL20(2)                                                       <------ ------>WRKY38(1)  <----------DOF2   --------->TOE2(3)                                       <------ZmHOX2a(1) ------>WRKY12  --------->ARR11(3)   <---------MYB59                  <---------YAB1    --------->CCA1(2) --------CBF<------ZmHOX2a(1)  <---------HSFB2a(2)         *TSS<---------ATHB12      <---------TOE2(3) >ANAC46  --------->ANAC55(2)  --------->HSFB2a(2)         ------------>CBF    <---------TOE2(3)  <--   ttgaccaacgttaaggaatgtcttttaatatttttggaacctaaatgctaatactgtataccacaatcacttatgagtattgaagttgagatagaggagg  13847700                                 --------->ICU4                               --------------->AGL15                               <---------------AGL15                              <-----------------AGL2                              ----------------->AGL2                            --------->ANAC58                            --------->ANAC58                                      <---------ALFIN1                  <---------At4g35610                                          --------->ANAC58               --------->At4g35610                                             --------->ANAC46      <---------ARR11(3)   --------->DAG2            ----------->GT1           --------->ANAC58    <-      --------->ARR11(3)  ---------->DOF2          ---------->DOF2        <---------ARR14(2) <------- ---------AtSPL8  --------->At4g35610          ---------->DOF2            --------->ARR14(2)<-------- -----TEIL --------->ARR14(2) ----------------->AGL3 ------------------------>ANAC81        ---------   tacaaggagaccttatctgcagaagacaaaaagccatttttagcaaaactaaagaaagaaaaaagattgaaacacaaatatgcgccactcgtagtccacc  13847800                     --------->ZAT14                     <---------ZAT14                   ===================bZIP_DOF                   =============================================bZIP_DOF                   --------->bZIP60(2)              --------->ANAC58                            --------->GLK1(2)              --------->ANAC46     <----------DOF2       <---------ARR11(3)     <----------DOF2 <---------ZAT18                     <---------GLK1(2)     ========================bZIP_DOF     --------->AHL20(1)                                   <----- <---------CCA1(2) --------->TGA1a <---------DAG2    ---------->DOF2              <----------DOF2 --------CCA1(2)   --------->O2---------->ID1     --------->YAB1                  <---------DAG2 --ALFIN1     --------->ANAC58 <-----------GT1 <---------AHL20(2)                <---------ANAC58 -ZAT18     =================bZIP_DOF  --------->AHL20(2)--------->ARR11(3)      <---------ANAC58  <- >ZAT18     ---------->DOF2<----------DOF2<---------AHL20(1)                   <-----------GT1xxxxxxx   cctatctctttggcaaaagccacttcactctttttccctttttatatattaaaaataaagattcttaaggctcttcatattttgctttttgtcaactctt  13847900                              ------>ZmHOX2a(1)                      ------>MYB83<-------TEIL                      ------>MYB46(1)                    <---------MYB46(2)                    --------->AtMYB61                    <---------MYB111(2)                         --------->ANAC46                   --------->ANAC46                            <---------TOE1(2)      <---------At4g35610     <---------YAB1                   --------->LBD16 -----DOF2         --------->ANAC58                            <---------TOE2(2) ---------DOF2     --------->ANAC58       <XXXXXXXXXXXXXXXXXXXXXXXMIR163                ------>ZmHOX2a(1) xxxxxxxxxxxx>smallRNA(i2)  ----------->RAV1(2)               <-----------RAV1(2)   <-----------GT1   tctttgccatctgttacaaacaccaaactctcctgattcatcagttttaagtcttcttcaagtcccaggtaacttcttcttaattgtttcctcttgtgtt  13848000                                         --------->ANAC55(2)                                     <-----------HVH21                               ----------->GT1                                  <---------ANAC58                                  --------->DAG2                                  <---------ANAC58                                 ---------->DOF2                             <---------MYB52(1)                       --------->ARR11(3)                           <-----------RAV1(1)            <--------P  --------->GLK1(2)     <---------DAG2       ------>ZmHOX2a(2)            <---------HSFB2a(2)   ----------->GT1     <----------DOF2    <---------AGP1   <---------ANAC55(2)         <---------GLK1(2)  <-----------GT1       <---------ARR11(3)             --------->HSFB2a(2)  ---------->ID1         <-   ttgttaactttttttctagcattcttgatctgttgttcttgtcacttgttttgttttctggtaagagaatagaatcttgttgtaataaagttaaactctg  13848100                                           <---------ZAT18                                           --------->ZAT18                                           <---------WRKY38(1)                                          --------->TCP16(2)                                   ------>ZmHOX2a(2)                                 <---------ARR11(3)                                 <---------AGP1                                 --------->ARR11(3)                                 <---------ARR14(2)                                 --------->ARR14(2)                                <---------CCA1(2)                           --------->HSFB2a(2)<---------ALFIN1                      <---------MYB46(3) <---------PCF5     --------->AHL20(2)           <-----------ARR10   ----------->ARR10         <---------ICU4      <---------DAG2         <    <---------At4g35610    <---------HSFB2a(2)--------->ANAC46  <---------ZAT18                  <---    <-------GAMYB    <---------AtMYB61   <---------TCP16(1) <---------AHL20(2)             <------ZmHOX2a(2) ---------DOF2     <----------DOF2<------ZmHOX2a(2)  <-----------GT1         <----------DOF2---------   tctttcagttgctaatctaagctttggttccagtagatcttagggtccacacattttactaattaatccactctctctactttttaaacatggatcatca  13848200  Previous    Next  AGI:  At5g35630.1    Description:  GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase. Identical to Glutamine synthetase, chloroplast/mitochondrial precursor (GLN2) [Arabidopsis Thaliana] (GB:Q43127); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to Glutamine synthetase, chloroplast precursor (Glutamate--ammonia ligase) (GS2) (GB:Q42624); similar to plastidic glutamine synthetase precursor [Brassica napus] (GB:CAA73062.1); similar to glutamine synthetase [Brassica napus] (GB:CAB72423.1); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147); contai Range:  from: 13847659    to: 13850681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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