Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <-----------------AGL1                  ------>ZmHOX2a(2)                --------->ARR11(3)                <-----------ARR10                <---------AGP1                --------->ARR14(2)                <---------ARR11(3)       --------->ZAT18       --------->ZAT14       <---------ZAT18 <---------ALFIN1            ----------->GT1              <---------ANAC58     --------->At4g35610  <----------DOF2  <----------DOF2                      <---------ANAC58   <- --->ZmHOX2a(1) <---------ARR14(2)       --------->ZAT2             --------->At4g35610            <- ---DOF2       <---------CCA1(2)    --------->ANAC46          <---------At4g35610                  <-   ctccattagcacactctggatcttcccactttggctcaacaccagctttgaacaagtgaatttcagcattcgctgtcaatttgctagtctgaaatatagt  13843200                                                ------>ZmHOX2a(2)                                                <-------TEIL                                               <------ZmHOX2a(2)                                      <---------GLK1(2)                                      --------->ARR11(3)                                      <---------ARR11(3)                                    ----------->ARR10                                  =====================HOX2a_HOX2a                                  ====================HOX2a_HOX2a            --------->YAB1        ------>ZmHOX2a(1)                           --------->TOE1(3)           --------->ZAT6        --------->TOE1(3)                            --------->TOE2(3)    <-  <---------ZAT18                --------->TOE2(3) --------->AtLEC2           --------->YAB1      <-- --------ANAC58            <-----------GT1    --------->ARR14(2)           --------->YAB1         --- --------ANAC46       --------->AHL20(2)      <---------ARR14(2)    <-------TEIL                 ---- --------ANAC58       <---------AHL20(2)  <---------LBD16         --------->ARR14(2)             ----   ctcgtgcaatctaacaataaccaaaaaattaacatccttagattttcggatccatacacatagatcgagattcacaataaccatagcttctatacaaatc  13843300                --------->ANAC58              ---------->DOF2                                                            --------->ETT(2) <---------ARR14(2)                                                                <---------DEAR3(1) --------->ARR14(2)                                                        <---------ARR11(3) --------TOE1(2)--------->ANAC58                                           --------->GLK1(2) -------------AGL15                                                  --------->LBD16    <------NtERF2 ------------>AGL15                                               --------->MYB46(3)  --------->ALFIN1 ------------->AGL2 --------->ANAC58                     ---------->DOF2   --------->ARR11(3) ------------->AGL3 --------->ANAC58       ---------->DOF2       ------->TEIL   ----------->HVH21   ccagatttagaagttacaaagcaaggcattgacaaatattgaaatcaaaggagaagagagaaagacgaacccccaaaaatcttcgacggtgtcgaaagta  13843400                                <----------DOF2                               <----------DOF2                              <------NtERF2                             --------->ABI4(2)                            <---------DEAR3(1)                            --------->RAP2.3(2)                            --------->RAP2.3(3)                            --------->DEAR3(1)                           <------NtERF2                           --------->RAP2.6(1)                           --------->DEAR4(2)                           --------->ORA47(2)                           --------->ATERF1(1)                           --------->RRTF1(1)                           --------->ERF1                           --------->RAP2.3(1)                          <---------ATERF1(1)                          <---------RAP2.3(1)                          <---------DEAR4(2)                          <---------ERF1                          <---------RRTF1(1)                          <---------RAP2.6(1)                          ------>NtERF2                          <---------ORA47(2)                         <---------RRTF1(2)                         <---------RRTF1(3)                         <---------RAP2.3(3)                         <---------RAP2.3(2)                         <---------DEAR3(1)                         --------->ALFIN1                         <---------ATERF1(2)                                                    -----                         --------->ATERF1(2)                                                   ------                        <---------ABI4(1)                                                   <--------                       <---------ATERF1(1)                                             <---------MYB46(3)                       --------->ZAT2                                                 <--------P-----               --------->HSFB2a(1)         <------MYB83                             <---------MYB46(3)               <---------HSFC1(2)          <------MYB46(1)                         <---------AtMYB61               --------->ZAT2------>NtERF2 <---------MYB46(3)         <----------DOF2<-------GAMYB               <---------HSFB2a(1)     --------->ATHB12           <----------DOF2<---------ANAC58               --------->At4g35610    <---------YAB1              <---------DAG2 <---------ANAC58               <---------At4g35610  --------------->AGL15<---------ARR14(2)      <-----------RAV1(1)               --------->HSFC1(2)   <----------DOF2      <---------GLK1(2)   <---------ANAC58  ------              <-----------ARR10<---------DAG2            --------->ARR14(2)  <---------ANAC58 <------  <----------DOF2    <-----------RAV1(2) <---------WOX13(1)    <---------ALFIN1  <---------ANAC46   taggctttacgaagagaagctccccaggcggcgcctttctttgattggttatcgaaccagaaactccactttctttcgagcttgtgtggttgtttctccg  13843500                        <---------LBD16                        --------->ATERF1(1)                       --------->ABI4(1)                      <---------DEAR3(1)                      --------->DEAR3(1)                      <---------ATERF1(2)                      --------->RAP2.3(3)                      --------->RRTF1(2)                      --------->RRTF1(3)                     --------->ERF1                     --------->DEAR4(2)                     <------NtERF2                     --------->ORA47(2)                     --------->RAP2.6(1)                     --------->RRTF1(1)                     --------->RAP2.3(1)                    ------>NtERF2                    <---------ATERF1(1)                    --------->ABI4(1)                    <---------RAP2.3(1)                    <---------At4g35610                   --------->ANAC46                   --------->RRTF1(2)                   --------->RRTF1(3)                   <---------ALFIN1                   --------->RAP2.3(3)                   <---------DEAR3(1)                   <---------ATERF1(2)                   --------->RAP2.6(2)                   --------->RAP2.3(2)                  --------->DEAR4(2)                  --------->RAP2.3(1)                  --------->ORA47(2)                  --------->ERF1                  --------->RRTF1(1)                  --------->ATERF1(1)                 <---------RAP2.3(1)                 ------>NtERF2                 --------->LBD16                 --------->At4g35610                 <---------ATERF1(1)        --------->LBD16------>NtERF2        ----------->GT1<---------ATERF1(1)       --------->ATERF1(2)------>NtERF2      <---------LBD16--------->ATERF1(1)      <------NtERF2--------->DEAR3(1)      <---------ANAC46--------->ATERF1(2)     ------>NtERF2--------->RAP2.6(1)     <---------RAP2.3(1)<------NtERF2    <---------DEAR3(1)--------->RAP2.3(2)    <---------ETT(2)<---------DEAR4(2)    --------->ETT(2)<---------DREB2C(1)  <-----------HVH21--------->ATERF1(2)                <------NtERF2                            <----- <-----------RAV1(1)--------->At4g35610             --------->RAP2.6(2)         <---------At4g35610 ---->LBD16      <---------At4g35610                <---------ETT(2)<---------ZAT2    --------->RAP2.6(3) --->ANAC46     --------->ANAC46                    --------->ANAC58<-------GAMYB<XXXXXXXXXXXXXXXXXXXMIR866-3P ---GT1<---------ATERF1(2)--------->LBD16           --------->ANAC58--------->ZAT2  ----------->HVH21 ->NtERF2<---------MYB52(1)<------NtERF2  --------->ANAC46          --------->At4g35610    <--------- --->DEAR3(1)  <---------LBD16        <-----------HVH21   <---------GLK1(2)     ----------->RAV1(2) < ---LBD16--------->At5g28300       <-------TEIL     --------->ETT(2)<---------At4g35610<---------RAP2.6(2)   cctctgtcgccggtaattccgccgccgccgggagaggctcgttcacatcatcggtcgccatattcttcgcagttgagttttcttctgagacggcttttgg  13843600                                                                                     ------------>CBF                                                                       --------->HSFB2a(2) ----MYB46(3)                                                          <---------HSFB2a(2) -DOF2                                                    ---------->DOF2      <------------CBF ---------ANAC55(2)  *TSS         ------->TEIL       ----------->GT1  --------------->AtSPL8      <--   ttacgagagagggacagagagattgtttttgagatgtattttggaatggtttaagaagtgaaaagggctatttctggactctattgggtcaattttgggc  13843700                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                              --------->AHL20(2)                                                                            --------->YAB1                                                                      --------->ANAC58        -------   <-----------HVH21                ---------->ID1                    ----------->GT1         <------  --------->WOX13(1)   <----------DOF2<----------DOF2        <---------AHL20(2)   --------->RVE1(1) <-------TEIL  <-----------GT1     <-----------GT1           --------->AHL20(2)--------->YAB1 ------- -------DEAR3(2) --------->ZAT6<----------DOF2     <----------DOF2    --------->ANAC58       --------   cggtccatcagagcatttaactcttcttttcttcttttttctttttctattgtcttttggtatttaaaaaacaagtaaaaataaaaatctccaaaattaa  13843800                                                                                                -----                                                                                                <----                                                                                               ------                                                                                 --------->ANAC46---- -->AHL20(1)                        <---------AHL20(2)                     --------->AHL20(2)  ------ ---AHL20(2)                 <---------TOE2(3)         ----------->GT1--------->AHL20(2)       <----- -->AHL20(2)                ---------->DOF2         --------->ALFIN1 --------->AHL20(2)  --------->CCA1(2) ->AHL20(2)            ----------->GT1    <-----------GT1        --------->AHL20(2)   <---------TOE2(3)   ttgcaagtggaatcccaatagacaagggtttaaagtatttttttttacaacaaggtgttgttaaaaaaaaaataaaaaaaaatacaccaaggtatgagat  13843900           <---------LBD16        ---------->DOF2                          <---------ICU4                                     <     --------------->AGL15                 --------->YAB1                                     ------- ---->CCA1(2)                              --------->TOE2(3)                               <---------HSFB2a(2) --ZmHOX2a(2)           --------->YAB1   --------->ARR11(3)                                --------->HSFB2a(2) --->ARR11(3)        <----------DOF2     --------->GLK1(2)           --------->AHL20(1)    >>>>>>>ZML2 -->ZmHOX2a(2) --------->ARR14(2)        <---------ARR11(3)          --------->ARR11(3) --------->GLK1(2) --->AGP1 --------->MYB52(1)   <---------YAB1   --------->ICU4       <---------AHL20(1) <---------ARR14(2) ----ARR11(3)  <---------ARR14(2)  --------->AtLEC2             ----------->GT1 --------->TOE2(3)   -   ctaatttccaaatagcggaatttctttcatattgtcaatgcaaaatcttaattagtagtatcaaattagaaaatattgtttacattagaggttctagagt  13844000               <---------AHL20(2)              --------->AHL20(2)             <---------YAB1          <---------AHL20(2)          --------->AHL20(2)                                                            <------------          <---------AHL20(1)                                                            --------->MYB59      <---------CCA1(1)                                                             --------->ARR11(3)      <---------RVE1(1)          <---------AHL20(2)                            ------>ZmHOX2a(2)     --------->AHL20(1)         <---------------AGL15                        --------->ARR14(2)     <---------ARR11(3)         --------->AHL20(2)            ------->MYC3   <---------ARR14(2)     <---------AHL20(1)         --------------->AGL15         <-------MYC3   --------->ARR11(3)     --------->ARR11(3)    <---------ARR11(3)              <---------ANAC55(1)<------ZmHOX2a(2) ---------->DOF2         <---------YAB1           ----------->HVH21          <---------AGP1 <-------TEIL ---------AHL20(2)     --------->YAB1           <---------At4g35610          <---------ARR11(3) ---->GT1 --------->AHL20(1)    <---------AHL20(2)<---------YAB1            <---------CCA1(2) -------->AHL20(2) ---------->DOF2     ----------->GT1 <-------GAMYB<---------YAB1  <---------GLK1(2)   aataaaagatattttattatataaagcatgatttttaaatttagtaattcatatgactgttacatgtgttatttttgtagatcttagattttggtacatg  13844100  Previous    Next  AGI:  At5g35620.1    Description:  LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUSES); RNA binding / translation initiation factor. Identical to Eukaryotic translation initiation factor 4E-2 (EIF4E2) [Arabidopsis Thaliana] (GB:O04663;GB:Q9SAN8); similar to EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E, LOSS-OF-SUSCEPTIBILITY TO POTYVIRUSES), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT4G18040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71461.1); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040) Range:  from: 13841935    to: 13843621    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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