Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ----------->RAV1(1)     <------NtERF2                                                                                 <-    ------>NtERF2                    --------->ANAC46                            ----------->RAV1(2)   --------->ANAC46          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <-----------GT1     -----   --------->ANAC58         --------->TOE2(3)                     --------->AHL20(2)         <-------   --------->ANAC58       <---------AHL20(2)                      <---------AHL20(2)        --------- ---ZmHOX2a(1)        <---------CCA1(1)      <---------MYB52(1)  --------->AHL20(2)         <--------   gactcgcgccacaagagagtttggatatttcattagtctccacaactgtttggcaaggagggctagattaaattcttctaaccttctgaagcccaatcct  13840500                             --------->ANAC58                 <-------GAMYB                             <---------ALFIN1                <-----------RAV1(1)                             --------->ANAC58                --------->MYB111(1)                             --------->ANAC46                --------->MYB52(2)                           <---------ALFIN1                  --------->MYB55(2)        <---------ANAC46   ----------->RAV1(1)               --------->MYB111(2)   <<<<<<<<<RAP2.2      --------->PCF2                       <---------MYB46(3) ---------DOF2          ---------->ID1 <---------ATHB12    <-------GAMYB ->ZmHOX2a(1)      --------->GLK1(2) --------->MYB52(1)    <---------ANAC58 --ATHB12         <---------GLK1(2)------->GAMYB           <---------ANAC58 >ARR14(2)    <---------At4g35610--------->ANAC58         <---------MYB46(3) -ARR14(2)    --------->At4g35610--------->ANAC58 --------->ZAT14       --------->YAB1  <-----------GT1   cctttagattgtgggaagcagaatttgtcccacacaacccaatggagacctctactctcttggttgttgctccatcataagttagaaatttcactgttga  13840600                                                                 --------->ATHB12        ------>MYB46(1)                                                                <---------ATHB12    <-----------GT1                                                      <---------ANAC46            <----------DOF2                     ---------->DOF2                  <---------ANAC58       ------->TEIL------>MYB83     --------->MYB46(3)                   <-------TEIL<---------ANAC58    ----------->ARR10       ---   gtttggaacaaatgttttttggtaaaaggaaactcgacattacatacattggaaaggcttgtgccactgatttgataagaacctctttacctcccttaga  13840700                                                   --------->ANAC58                                                   --------->ANAC58                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                       <---------ARR11(3)                                       <---------ARR14(2)                                       --------->ARR14(3)                                       <---------ARR14(3)                <-------TEIL           -----    <---------ICU4          <---------MYB52(1)   ---------->DOF2  <---------ANAC46           xxxxxxxx   --------->ICU4    <---------AHL20(2)--------->ARR11(3)         <---------ANAC58    <---------AtLEC2 -------->GT1       --------->ICU4     --------->ARR14(2)         <---------ANAC58<----------DOF2   <   gagtaattttgacgaccaagtatttattcggttttttagacgatcttgtacaaaagcaaaaacttatgccttgggtccatagctctttgcaaggagtcct  13840800                                          --------->AHL20(2)                                        <----------DOF2                                        ------>ZmHOX2a(1)                                    --------->ARR11(3)                                    <---------ARR11(3)          <---------ALFIN1       ------>MYB46(1)          <---------CCA1(2)      ------>MYB83  <------MYB46(1)              <---------MYB111(1)  <------MYB83                 <---------MYB59 --------->MYB111(1)          <---------ANAC55(2) <---------MYB46(3)        <---------ARR14(2)                              <---------ANAC58 --------->MYB46(2)        --------->ARR14(2)                   <------ZmHOX2a(1)     --------->MYB52(1) ->ZmHOX2a(1)    ------>ZmHOX2a(1)  <-----------GT1      <----------DOF2   <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC55(2) <-----------GT1    ------->TEIL  --------->YAB1  <- ---------MYB55(1)       <---------MYB46(3)    <---------ICU4 <---------TOE2(3) --------->LBD16    --   cagtaggtgcccatacctccttcttggtggatacctaatatccttttaatatttgccttcttttgaggatggaccttgcttccgaacataactgaagact  13840900                                                                   --------->ANAC58                                                                   --------->ANAC58                                                       --------->YAB1                                                       <------------ATHB5                                                       <--------ATHB1                                                      <---------ATHB51                                              --------->AtMYB61  --------->SPL1(1)                                             ------------>CBF    <---------SPL1(1)                                        --------->ARR14(2)      --------->TOE1(2)                <-----------GT1         --------->ARR11(3)      <---------SPL7             *TSS--------->MYB52(1)     <---------ARR14(2)    --------------->AtSPL8            <---------YAB1              <---------ARR11(3)    --------------->AtSPL3           <---------AHL20(2)          <---------CCA1(2)      <---------------AtSPL3           --------->AHL20(2)  --------->MYB46(3)     --------->ICU4                        --------- --------HSFB2a(2)           --------->MYB52(1)   ------------>CBF--------->SPL7        --------->ZAT6 ------->HSFB2a(2)      --------->AHL20(2)  -------->P<---------ATHB12    ----------->RAV1(1)  ------   tggagaagttgattaaaattaccagattaaacaacgactacatatctaccaatgcaataatagaaccgtacgactccaacataagacaaaacactaatat  13841000                         <-----------GT1                       <---------AHL20(2)                       --------->AHL20(2)                   --------->AHL20(2)                  <---------WOX13(1)                                             ----------->GT1                ----------->GT1                                                 <---------TOE2(3)                -------->HAHB4                                               <---------WOX13(1)                --------->ATHB12                                       <----------DOF2               <---------YAB1                                       <---------ARR11(3)    ----------->GT1<---------AHL20(2)                               --------->ARR11(3) >YAB1     --------->AHL20(2)      --------->GLK1(2) <---------HSFB2a(2)   --------->ATHB12 --->ARR11(3)  --------->ICU4      ------->TEIL      --------->HSFB2a(2)  <---------YAB1   ccagtttggagaaaaaaatgattaattaaaccatatgaatctgaaatttgtttttccaaaacttgtttaagaacttttcattgatgtaaattgcaatctc  13841100                                                                                ------>ZmHOX2a(1)                                                                               <---------------AGL15                                                                               --------------->AGL15                                                                              ----------------->AGL1                                                                              ----------------->AG                                                                              <-----------------AG                                                                              ----------------->AGL2                                                                              <-----------------AGL1                                                                              <-----------------AGL2                                                                          <---------ANAC58                                                                     <------MYB46(1)           <-----                                                                     <---------MYB46(3)     ---------                                                                     <------MYB83--------->ATHB12                                                           ------>ZmHOX2a(1)  ----------------->AGL3                                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --                                                          --------->TOE2(3)<----------DOF2  <--------                                                         --------->YAB1   <---------ANAC58 <---------CCA1(2)          <----------ID1     --------->ANAC46    <---------MYB46(3)<--------P <-----------------AGL3   atagttttgttaacaacaaaatgaactgtaaacccaatttcagactcgtgtttgttcaatcctaaacatgttggtttctttcctgatttggctatatctt  13841200                                                                      <--------P         --------->YAB1                                              <---------MYB52(1)      --------->YAB1                                 --------->AHL20(1)     <---------AHL20(2)                              <---------ARR11(3)     --------->AHL20(2)                              --------->AHL20(2)    --------->ICU4                                   <---------AHL20(1)    <---------YAB1                         --------->AHL20(2)      <---------HSFB2a(2)  --------->YAB1                         --------->AHL20(2)        --------->HSFB2a(2) <---------AHL20(2)                      <---------AHL20(2)  <---------ICU4 <---------YAB1                  --------->AHL20(2)  <---------AHL20(2)     <---------ARR14(2) -----DOF2                       <---------AHL20(2)  --------->ARR11(3) <---------At4g35610 >ARR11(3)             --------->YAB1<---------AHL20(2)   --------->WOX13(1)--------->ARR14(2) ------->YAB1         <---------YAB1 --------->AHL20(2) <---------AHL20(2) <---------RAP2.6(3) -ARR11(3)     --------->YAB1<---------AHL20(2)<-----------GT1    <---------ANAC46              -----   tttataattaataacaatgagactatgatagtttattaattaaaaaaatatacaatatattaatcagttcgggtagccgatttggaattgaagaaatgta  13841300                                                 <---------AHL20(2)                                                --------->AHL20(2)                                                <---------AHL20(2)--------->ARR11(3)                                           --------->YAB1         --------->GLK1(2)                <---------AHL20(2)   --------->YAB1               <---------ARR11(3)                --------->AHL20(2)   --------->TOE2(3)           <---------GLK1(2)             --------->AHL20(2)    --------->GLK1(2)    ------>ZmHOX2a(1)               <---------At4g35610             <---------AHL20(2)    --------->ARR11(3)  --------->TOE2(3)             --------->ZAT14            <---------AHL20(2)     <---------ARR11(3)  --------->TOE1(3)        ---------->DOF2 -->TEIL    --------->AHL20(2)    --------->RVE1(1) <-----------GT1         <----------DOF2      ----   tttagtatcgagtattaatttataaacatatactaaaaatcttaatcaaatttttttccttaatccaaaatctctaagctttaaaagttcagtagccaat  13841400  Previous    Next  AGI:  At5g35615.1    Description:  pseudogene, similar to putative reverse transcriptase, blastp match of 35% identity and 7.1e-37 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 13839054    to: 13840913    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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