Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ICU4                 ------->GAMYB               -------->P                                  --------->ANAC58               ------>MYB46(1)                             --------->ANAC58 ------->RAV1(1)--------->MYB46(3)                        --------->SPL7 -----ALFIN1   ------>MYB83                              --------->CCA1(2) --->LBD16   <---------MYB111(1)                        --------->ARR14(2) -->ANAC58   --------->MYB46(3)    --------->YAB1       <---------ARR14(2)                          - -->ANAC58   --------->AtMYB61   --------->ANAC58       --------->ARR11(1)                        <-- -->ANAC46   <---------MYB59     --------->ANAC58  --------->MYB52(1)  --------->GLK1(2)          <-- --LBD16  <------ZmHOX2a(1)----------->RAV1(1) XXXXXXXXXXXXXXXXXXXX>MIR390A/B            ----------->ARR10   accagtagtccaggaccaaccaaaaattgccacataagcatgagagaagcccataagggatacggcccatgagaacctcgaattgagagggaagacatgg  13795900             <---------LBD16         <---------MYB52(1)         <---------ARR14(2)         --------->ARR14(2)        <---------RAP2.6(3)        <---------SPL7       <---------MYB46(3)                              <---------TOE2(3)     <------NtERF2  <------MYB83                       <---------TOE1(3)   --------->ALFIN1 ----------->GT1                 <----------DOF2   <---------RAP2.6(2)----------->HVH21         <---------RAP2.6(2)             --------->ZAT18 <---------bZIP60(2)<------MYB46(1)            --------->RAP2.6(3)     --------->GLK1(1) --------->ZAT2    <---------AtMYB61          <---------ARR14(2)    --------->LBD16--------->ANAC58 -------->ALFIN1   --------->ALFIN1           --------->ARR14(2)    <------NtERF2  --------->ANAC58 -------TOE1(1)   <--------P             <------ZmHOX2a(1)         <---------ANAC46--------->ANAC46 -------TOE2(1)--------->LBD16         <---------TOE2(3) <---------GLK1(2) ---------->DOF2   acgaggtggccgttctgcgggatggtgacaaggtcgaaattaaggacagttcggcttaaggttctcgggccgggtatcaaagcccacgaagtccaaagtc  13796000                                                                                                  ---                                                                                               <-----                                                                  <---------YAB1 --------->AHL20(2)                                                                  <---------ANAC46<---------AHL20(2)                                                    <---------TOE1(3)  --------->ATHB51        ------                                                    <---------TOE2(3) <---------YAB1      <---------ANAC55(2)                                                   --------->MYB52(1) <---------AHL20(2)  --------->ANAC55(2)                                             <-------TEIL         <---------ANAC55(2)    ------------                    --------->TOE2(3)     --------->At4g35610 --------->AHL20(1) <---------AHL20(2)   aattcaaattcaaacgtttgaacattaaactcgaagactgaaacagatgcagttaagggagaaatattatgtataattgagaattaaatgttatgtacta  13796100                                --------->ANAC46                                --------->ANAC58   <---------ARR11(3)                                --------->ANAC58   --------->ARR11(3)                               <-------MYC3       --------->YAB1 ------>YAB1                   <-------MYC2      ----------->ARR10   <-----------GT1 ----------AGL15               ------->MYC3    ---------->DOF2    <---------YAB1 --------->AGL15               ------->MYC2--------->HSFB2a(2)   --------->AHL20(2)<----------DOF2 --->AtSPL8               <------ZmHOX2a(1)<---------HSFB2a(2) --------->ICU4   <---------TOE1(2)   gtataagtaagacgttgtgagccatgtaggacacatgcaatttttctagcaaagatactatagccatttttataccaattcgtagctttatacatttgat  13796200                                                                                 <---------ANAC46                                                                               --------->MYB52(2)                                           <---------ANAC58   --------->YAB1   <---------MYB46(3)                                           <---------ANAC46  <-------TEIL --------->DEAR4(2)                                           <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ATERF1(1)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    --------->RAP2.3(1)            <---------KAN4(1)    <---------AHL20(2)    <---------ETT(1)   <------NtERF2      <-------            --------->KAN4(1)    --------->AHL20(2)    --------->ANAC46  <---------RAP2.3(1) --------           <---------KAN4(2)  --------->AHL20(2)    --------->ARR14(2)   ------>NtERF2 --------->ALFIN1          --------->YAB1     --------->AHL20(2)     <---------ARR14(2)  <---------DEAR3(1)   <-------     ------>ZmHOX2a(1)       <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)  <---------MYB52(1)  ---------->ID1   <---------At4g35610   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC46 <------ZmHOX2a(1)   ttttgtcctcaagaataatccatctcactaaataaataaatacttgagtgtgtgaatccgacattcatattttggcgccgtttgtggggatggaggattc  13796300                                                <------NtERF2                        --------->YAB1                   <---------ALFIN1          <---------LBD16                       --------->ANAC46                  --------->ANAC46           *TSS                                  --------->ANAC58         --------->ARR11(3)           ------------>CBF                             --------->ANAC58         <---------GLK1(2)        --------->ANAC58                           <------NtERF2     <---------At4g35610    --------->HSFB2a(2)--------->LBD16              --------->RAP2.6(2)    <x --GLK1(2)<---------RVE1(1) <---------HSFB2a(2)<------NtERF2            --------->WRKY12          <-- ->ARR14(2)     <-----------GT1   --------->ANAC46                      --------->WRKY38(1)      <--- --ARR14(2)   <-----------GT1     --------->ANAC58                     <---------MYB52(1)        ----   ttgagtcatcagattttttcaccacattttcgagacaagcagcaatggccggagaagacgctctcagtacatcgttggccgaaacactcaaaactatgca  13796400                                                                                         <---------MYB52(1)                                                                                       <---------ANAC55(2)                                                                                       --------->ANAC58              ----------->HVH21           ------------>MYB.PH3(1)                      --------->ANAC46      --------->ARR14(2)            ----------->GT1                     <---------ARR11(3)      <---------ARR14(2)    --------->HSFB2a(2)                   ------->GAMYB        --------->ANAC55(1) xxxxxxxxxxxxxxxsmallRNA(s) <---------HSFB2a(2)               --------->MYB46(3)       --------->ANAC58 -------MYB52(2)            <-----------------AGL1          --------->ANAC46         <---------ALFIN1 ------At4g35610            <---------LBD16          --------->ANAC46   --------->ARR11(3)       <--- ----->At4g35610         --------->ARR11(3)     <-----------GT1 -------->P          -------->P   ----   gcaaaccatatcggacatgacacataagttctcggatgtggaaaaaactgttaccacactacaaacaacccaagtatctcttagccaacacgttagtact  13796500                              <---------GLK1(1)                              --------->GLK1(1)                            <------ZmHOX2a(1)                           --------->ANAC58                           --------->ANAC58                                         <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ANAC58     --------->ANAC46                                      --------->ANAC46      <---------ANAC46  --------->ZAT18                                          --------->ANAC58      <---------ANAC58  --------->ZAT14                                          --------->ANAC58 ------ZAT14            <---------ZAT14                                        <---------AtLEC2 ----- ----->ZAT14     <---------HSFB2a(2)          ------>ZmHOX2a(1)       <---------GLK1(1)         <----   atactatctcgtgttcgttctctaagtgcaggaaaccctattggagtcctaagaagaatgctcaattcgtcgagttcccttgcaaggaatggaaccagtg  13796600                                                                                                -----                                                        <---------ANAC46                      -------                                                   --------->ANAC58                           -------                                                   --------->ANAC58                       --------->ANAC58                                                   --------->ANAC46                      ------->MYC2                                          <---------ARR14(2)                             ------->PIF5                                  ----------->RAV1(2)  --------->ZAT2                    <-------MYC3                                  <---------At4g35610  <---------ZAT2   --------->WOX13(1)--------->ANAC58                          --------->At5g28300--------->ALFIN1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         ----------->GT1 <------ZmHOX2a(1)         --------->WRKY38(1)   <-------MYC2                 <---------At4g35610<---------HSFB2a(2)--------->At4g35610               <-------PIF5 ---->ZAT14      --------->At4g35610--------->HSFB2a(2)<---------At4g35610 --------->YAB1------->MYC3 -----ZAT14   <---------At4g35610 --------->At4g35610 ------->TEIL --------->WRKY12  --------->At4g35610   gacagacaactcttgatgctgctaacacagtaattcatctggaggatgtggagacgcagcttggagacgatgaccaattagcacatcagcacgagcaaga  13796700                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     --------->ANAC58    <---------WRKY18(1)                                              --------->ANAC58   ----------->HVH21                                     ---------->DOF2 ------>NtERF2 ----->DOF2                                     --------->CCA1(2)    --------->ANAC46 -->ANAC58   <---------HSFB2a(2)              <---------------------WRI1 ----------->RAV1(1) -->ANAC58   --------->HSFB2a(2)           ---------->DOF2       <-----------HVH21  ------>NtERF2   aagtcttgaccagttcgagaccatgagaaaggttagccaagaattgaaagagatgaaatcaaagttccatcaggccaccagttcggagccagacatcgat  13796800  Previous    Next  AGI:  At5g35602.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.0e-171 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 13796345    to: 13801570    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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