Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ------>ZmHOX2a(1)                                                                      --------->LBD16                                                             ------>MYB46(1)   ======================                                                        --------->ANAC46   <---------ARR14(2)        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->GLK1(1)       ----------->GT1            <--- ----->WOX13(1)                  --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---- ----ATHB12       ------>ZmHOX2a(1)           <---------GLK1(1)     <---------LBD16             ----- -MYB59--------->ALFIN1  <---------ZAT6     --------->ATHB12 ------>MYB83  --------->ARR14(2)  <-----   aatccaagggtgtctgcatcctcactagacttaaaacataatgggatgatttccattcccaccaaattactccggtgaatcctttctaaactatttgaga  13793900            ------->GAMYB         ---------->DOF2         <---------DOF5.7(2)       --------->DOF5.7(2)                                                                  <-------TEIL      <----------DOF2                                                                    ----------->GT1 ===HOX2a_HOX2a                                                                          <------MYB46(1) ---ZmHOX2a(2)                                                                 --------->CCA1(2) -----ARR11(3)           ----------->RAV1(1)        <------ZmHOX2a(1)         --------->ARR11(3)    < ---->ARR11(3)          <----------ID1   ---------->DOF2                      <---------ARR11(3)   -- ----At4g35610  ----------->GT1       --------->TOE2(3)                 ---------->DOF2  <------MYB83   tcactctgctttaacgccctgtaaaaacaacaaaattttgcctcaaagaatttaggacacaaacttcagagagagaaagagatatagagggaggttcaaa  13794000                                                                   --------->ATHB51                                      --------->MYB46(3)           --------->YAB1                                     -------->P                   --------->ICU4                                  --------->At4g35610             <---------YAB1                                  --------->ZAT2                --------->YAB1                             --------->ANAC55(2)             --------->YAB1                             <---------ANAC55(2)           ------>MYB46(1)                            <---------LBD16          --------->At4g35610                <----------DOF2                           --------->MYB52(1)--------->YAB1-------->P <-----------RAV1(1)                    <------NtERF2 <---------At4g35610<---------At4g35610    <---------MYB59  ------->TEIL ----------->HVH21  <---------At4g35610--------->ZAT6<---------ZAT2<--------ATHB1  <---------ZAT2 -----------HVH21   --------->At4g35610--------->AtMYB61   ------>MYB83 <---------RAP2.6(2) <-------- --------->GT1      <---------ZAT2<---------ZAT2     --------->ZAT2<---------ICU4  --------->ZAT2   cctgtaacatgggtctcttggcagctaaatcacgggagctaccactaccatactcagctccaaccagaataattgtggcctaacaagctgctttgtatct  13794100                             --------->YAB1                    <---------YAB1                  <---------ANAC58                  <---------ICU4                    <---------ANAC58                  --------->YAB1                <---------GLK1(1)              --------->ANAC46     -                  <--------HAHB4                --------->GLK1(1)     --------->ANAC58   <---------ZAT2                 <---------YAB1          --------->ANAC46             --------->ANAC58   <---------At4g35610      --------->MYB52(1)     <---------ICU4    --------->ARR11(3)--------->ANAC58        <------NtERF2 -CCA1(2)     --------->ICU4<---------ATHB12   <---------ARR11(3)--------->ANAC58        --------->At4g35610   ctgaaaaaaaacagacattatcattatacaatcagtattaaacccacaagatttccttgggaaaattaagccaagaaacacaaaccatggcagcatcgaa  13794200                   <------ZmHOX2a(1)            --------->MYB46(3)           --------->ANAC58           --------->ANAC58           --------->ANAC46          <-----------------AG          <-----------------AGL1                                                                    -         <-----------GT1                                   <---------ANAC46                    ------    <---------ARR11(3)   <---------ZAT14                   <---------ANAC58                    ------    --------->ARR11(3)   --------->ZAT18                   <---------ANAC58                  --------    <---------GLK1(2)    --------->ZAT14             <---------AHL20(2)                    <---------HSFB2a(2) --------->DOF2  --------->YAB1                     --------->AHL20(2)                --------->HSFB2a(1)   gaaaaagattttcacccaataggaatgtgaactgtcttagggcaaacttatccatttaatagcttgttaacaagtctgatattcacaaatgttcccaaag  13794300                                                            <---------MYB52(1)                                                  <---------MYB52(1)                                                 --------->At5g28300     <---------YAB1                              <-------GAMYB     <---------AHL20(2)                         <---------MYB46(3) --------->ATHB51                               ----------->GT1 <---------ICU4                                <---------RAP2.6(2) -------->ICU4                                 <---------ANAC46 --->ANAC58  <---------At5g28300    ----------->GT1        --------->LBD16 --->ANAC58 <-----------GT1       --------->At4g35610    <---------LBD16                       ------ -->DOF2 <---------ICU4          *TSS         <---------LBD16                     <---------MYB52(1)   ccataatttcattgttaccgcatagacttccatatgagttgaaatatttgcggttaatctccggtgattctaaatcgtgtttcccttggtgatggaatta  13794400                                                                       --------->MYB52(1)                                                                     --------->LBD16                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         ----------->RAV1(1)        --------->ANAC58                                <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ANAC58                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->ANAC55(1)                      xxxxxxxxxxxxxxxx>smallRNA(i)                  <---------ANAC55(2)              ----------->RAV1(2)       --------->ANAC46            --------->ANAC55(2)              --------->At4g35610    --------->ZAT14                --------->ANAC46              <---------At4g35610    <---------ZAT18           --------->ETT(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              ----------->HVH21  <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------WRKY38(1) ----------->GT1----------->HVH21    <---------ZAT14           <---------ETT(2)  ----------->GT1 --->YAB1 <-----------HVH21xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)         -------   gaaccgtcaaatggtcatctgaccatgggctaagcccagtccacaacattatggacagtccatggtcgacccgtaacgaaaacgggttaaatggtctaaa  13794500                                               <------MYB83                                              <---------AtMYB61                                              <---------MYB46(3)                 --------->AHL20(2)           --------->MYB111(1)                <----------DOF2            <---------MYB46(3)               --------->ARR14(2)          --------->ATHB12               <---------ARR14(2)         <---------YAB1             --------->LBD16       --------->ANAC58           <------NtERF2           --------->ANAC58           <---------LBD16        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->LBD16        <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------At4g35610   <---------ALFIN1                                                  <-           --------->At4g35610  <---------REM1(2)  --------->WOX13(1)                             ---    <---------ICU4             <---------ALFIN1<------MYB46(1)                                   ----    --------->YAB1<---------AHL20(2)      <---------TOE2(3)                                      <---   <---------ATHB12           --------->ZAT18 --------->MYB59                                    ----   <---------ATHB51           <---------ZAT18<--------P                     <-----------GT1     <---- --->DOF2<---------LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ALFIN1            <------   gaccaattatgtccgcggatttaatgggctagcccacacggtctatggttggtccatcaattttctcaacacatcaattttcttctcttctctatctcgg  13794600     <---------ARR11(3)     --------->ARR11(3)   ------->TEIL                                                             --------->ATHB12 -----NtERF2                                                              <---------MYB52(1) --->NtERF2                                                          ------->TEIL ----->DEAR3(1)                                            --------->HSFB2a(2) ------DEAR3(1)                                    --------->MYB52(2)--------->ARR14(2) ------->HVH21                                   <---------MYB52(1)  <---------ARR14(2)             - --NtERF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------HVH21 <---------YAB1        <---------ARR11(3) ---DEAR3(1)                             ------>ZmHOX2a(1) <---------HSFB2a(2)          --------->ARR11(3)   cgacgaagctctctctctctcgcttcgacctctctctcaactcctactcccgttagttctactagaatatgaatccgttgattagaataagttctctcta  13794700             --------->YAB1                                                         --------->YAB1            <---------YAB1                                                     ------>ZmHOX2a(1) <---       <-------TEIL                                                           --------->ANAC55(2)----    <---------ANAC58         <---------AHL20(2)                         --------------->AtSPL8   <---    <---------ANAC58   <---------WOX13(1)                             <-----------GT1 <---------YAB1 -------->CCA1(2)   <---------YAB1          ------>ZmHOX2a(1)<----------DOF2  --------->TOE2(3)  ----   aaatatgcgttcatatgatagtctcattgattttattctctaagtccttatgcaatttcatcgctttgttattttctgttccttaattgtgattctgcat  13794800  Previous    Next  AGI:  At5g35601.1    Description:  pseudogene, cytoplasmic aconitate hydratase, similar to cytoplasmic aconitate hydratase; blastp match of 77% identity and 2.4e-53 P-value to SP|O04916|ACOC_SOLTU Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) (Fragment). (Potato) {Solanum tuberosum} Range:  from: 13793578    to: 13794333    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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