Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->GLK1(2)                                                                        ------>MYB83    <------ZmHOX2a(1)                                           --------->TOE2(3) --------->YAB1 ----->ZmHOX2a(1) <----------DOF2                   ------>ZmHOX2a(1)   --------->MYB52(1)      ----- -ALFIN1     ------->TEIL                        ------>ZmHOX2a(1)      ------>MYB46(1)        <-----   tcctgaggaaatttgaatctcttttgtacaagagatgtcaattccctaatcctccttcccttctcacctaaaccaaacagagaatcatcaaattgatatc  13729100                                                                                                 ----                                                                                          ===========                                                                                        <---------ARR11(3)                                               ------>MYB46(1)                          --------->ARR11(3)                                               ------>MYB83                           <---------YAB1                                              ----------->RAV1(1)                   -------->HAHB4                                           ------->TEIL                             <---------ICU4                                         --------->ZAT18                            --------->YAB1                                 <---------TOE2(3)                                 <---------ATHB12                                 <---------TOE1(3)                                 --------->ICU4----                                <---------DOF5.7(2)                               <---------TOE2(3)                    --------->YAB1    ---------->DOF2                            --------->YAB1 <---- ---->YAB1 --------->DAG2       --------->MYB52(1)                            <----------DOF2 <------ ----YAB1---------->DOF2      --------->DOF5.7(2)  --------->MYB52(1)     --------->ALFIN1------>ZmHOX2a(2)   atagaaacaaaaaaaggtcgaatcagagcaaggttaacgaaaatgcaccaacataccgagaacgttttgagtacgagtggctctaatgatgatctcagta  13729200                                             --------->ANAC58                                             --------->ANAC58       --------->ALFIN1                   --------->At4g35610       ----------->TGA1                   --------->ZAT2                             --------->ANAC46       ----------->HVH21               ------>ZmHOX2a(1)                    ----------->GT1    <------ZmHOX2a(1)               ------>MYB83                           <---------At4g35610 ----->ANAC58    --------->TOE2(3)  ------>MYB46(1)             --------->ATHB12     --------->ANAC58 ==========HOX2a_HOX2a--------->ANAC46--------->TOE2(3)       --------->TOE2(3)      --------->ANAC58 ----->ANAC58    --------->TOE1(3)------->GAMYB          ----------->ARR10 --------->At4g35610 -----ZAT18    ------->TEIL      --------->MYB46(3)    <--------P       <---------ZAT14 --------->AtMYB61 ---SPL7  <---------ANAC46     <-----------GT1 <---------ARR11(3) XXXXXXXXXXXXXXXXXXXX>MIR397A   cgcataggagtgacgcgaacctcaacaccagagtaaccatcctcagcaagctctctggttagaacctcattgagttcagcgtaaaacacaccatcggcta  13729300                                                                                          <----------DOF2                                                                                         <---------DAG2                                             <-------TEIL                          --------->GLK1(1)                              <---------TOE2(3)                                    <---------GLK1(1)                              <---------TOE1(3)                                   --------->ARR11(3)                         <---------ZAT6  --------->ANAC46                         <---------ARR11(3)                 <----------DOF2--------->TOE1(3)                             ---------->DOF2                 <---------DAG2<---------At4g35610                <-----------RAV1(2) <-----------GT1   cgaactacaaaattcaaaactttttttgtgttaagcttagaatacgatacattggtagagagatagagacaggggagggcaaaagatatcacctttctct  13729400                     <---------WOX13(1)                   <---------ICU4                   --------->ATHB12                  --------->ICU4                  <---------YAB1                                                              -------               ------------>ATHB5                                                     ----------->GT1               <------NtERF2                                                   <---------ANAC58             --------->ETT(2)                                   <-------TEIL  --------->ZAT18 -------             --------->ANAC58                                  --------->ARR14(1)    <------ZmHOX2a(1)             --------->ANAC58                                 --------->ARR11(1) <---------MYB52(1)       ------>ZmHOX2a(2)               <------ZmHOX2a(1)      --------->ARR14(2)<-------GAMYB--------     --------->ARR11(3)      ---------->DOF2                  <---------ARR14(2)<----------DOF2   <--     <---------ARR14(2) <---------ANAC58                      <---------GLK1(2)<---------ANAC58  ----     --------->ARR14(2) <---------ANAC58                    ----------->ARR10 <---------ZAT18--------   tcttgctgatctgggtcgccatgattgtttgcaaagcttgaggaggctagagacaaaaaccctagattcggagaagagagtgcgttaggagtgaaatgat  13729500       <---------MYB46(3)    <---------ANAC58    <---------ANAC46                                              ------------>CBF    <---------ANAC58                  <----------DOF2            --------->RAP2.6(2) -->YAB1                            <-----------------AGL1       ----------->RAV1(1) ---->GT1         *TSS             ------>NtERF2              --------->ANAC58 --->GT1<-------GAMYB       --------->ANAC58                  --------->ANAC58 -------AHL20(2)--------->DAG2   <------NtERF2                --------->ANAC46   ----------->GT1  <-- ----->AHL20(2)---------->DOF2  <---------LBD16        <------------CBF   --------->DAG2        <---- ->ICU4----------->GT1      --------->ANAC58         <---------YAB1      ---------->DOF2  <----------   aaaattgtgtggttaaataaagttaagagcaaggcccggccttttaaggcccatttctattgacaagccacaatataaagggactgaaaataaaaccatt  13729600                                                  --------->ANAC55(2)                                                  <---------ANAC55(2)                                                  --------->ANAC46                                                  --------->ANAC58                                                  --------->ANAC58                                                  --------->TGA1a          <---------ANAC46                                                  <---------O2             <---------ANAC58         <---------YAB1                           --------->O2             <---------ANAC58        <---------AHL20(2)                        <---------TGA1a       <---------MYB52(1)   --------->LBD16                             <------ZmHOX2a(2)      <---------ANAC58  --------->ANAC55(2)                         <-----------HVH21       <---------ANAC58 ---------GT1   ----------->HVH21           --------->LBD16        <-----------GT1 -------HVH21   <---------ZAT6       <---------At4g35610  <---------ARR11(1)   <---------ZAT6 -GT1   --------->AHL20(2)          <-----------GT1      <---------CCA1(2)--------->MYB52(2)   tcacccgtattaaaattagtgacagtgagaattgaatttagctatcccgatcacgtctcatatctataatttccgttccttgtgttagcaagagtagttt  13729700                                                                                     <---------YAB1                                                                             <---------ANAC58                                                                             <---------ANAC46                                             <---------YAB1                  <---------ANAC58                                            <-----------GT1              <---------MYB46(3)                                    <---------ARR11(3)      <---------YAB1  <-------TEIL        <-----------GT1         ---------->DOF2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   agatagtatttttctgttcaaaaaaaaaaaaaaaaaaagatagtattttcattttccaaattacgatgatgttattggttcgtgattttgaaagagtttt  13729800                                   --------->ANAC58                                   --------->ANAC58                             <-------MYC3                             ------->MYC3                                                           <                             ------->MYC4            --------->AHL20(2)                   --------->ANAC55(2)                             ------->MYC2          --------------->AGL15                  <---------ANAC55(2)                       --------->At5g28300     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------AHL20(1)                     --------->ANAC46        <-------TEIL                           --------->AHL20(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <----------DOF2                 <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------------AGL15     <----------DOF2 ------->TEIL           --------->DAG2    <-------MYC2  --------->YAB1      <-----------GT1 --------->AHL20(2) <--          ---------->DOF2<-------TEIL--------->ANAC46<---------AHL20(2)<-----------GT1  <-----------GT1   tagtgaattttaaaaagtattagacggtacatgtgctacgcacaatattcatgctttaattagtttatcagtttcacttctttatatatattacgaattt  13729900                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                          --------->ATHB12       <---                                                                         <---------YAB1          ----                                                                 --------->ATHB51               <----     <---------AHL20(2)                 --------->AHL20(2)       --------->ATHB12               -----     <---------AHL20(1)                 <---------AHL20(2)      <---------YAB1                 <-----     --------->AHL20(2)             <---------AHL20(2)       <---------AHL20(2)                ------ <---------RVE1(1)                  --------->AHL20(2)       --------->AHL20(1)                <----- ---------MYB52(1)              <---------AHL20(2)           <---------AHL20(1)               ------- -------TOE1(3)         <---------AHL20(2)                   --------->AHL20(2)              <-------   caggtattttatttgtctataaatgtttatttgtataatttataaattttaagagtttcaaaatttattattggtatcatttgaacatggatactattat  13730000  Previous    Next  AGI:  At5g35530.1    Description:  40S ribosomal protein S3 (RPS3C). Identical to 40S ribosomal protein S3-3 (RPS3C) [Arabidopsis Thaliana] (GB:Q9FJA6); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to unknown [Populus trichocarpa] (GB:ABK93809.1); contains InterPro domain K Homology, type 2; (InterPro:IPR004044); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain Ribosomal protein S3, eukaryotic/archaeal; (InterPro:IPR005703); contains InterPro domain K Homology, prokaryotic type; (InterPro:IPR009019); contains InterPro domain Ribosomal protein S3, C-terminal; (InterPro:IPR001351) Range:  from: 13727341    to: 13729518    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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