Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------YAB1                                                                        <<<<<<<<<MYB2                                                                      <------MYB83                                                                      <---------MYB46(3)                                                                      <------MYB46(1)                                                                  <---------DEAR3(1)     --------->ANAC46                                           --------->LBD16   <---------ALFIN1                                             ------>NtERF2  <---------ZAT14                                             <---------LBD16--------->TOE2(3)  --------->ZAT14                                     <---------ICU4 <---------AtMYB61 ------->At4g35610                                   <---------YAB1 <---------MYB52(1)         ------ --->DAG2                                          --------->YAB1 <---------ANAC46        --------->MYB52(1) --->DOF2         <-----------GT1 <-------TEIL    ------>ZmHOX2a(1)<-------GAMYB         <----------ID1   gcgctgcacatcatttagttttacaagttgtctaggtacgagtagcttagtcctcataatcgcttccggcgttggttttcattagtcaaaaacaacgaat  13672800                                           <---------ZAT14                                           --------->ZAT14         ---------->DOF2                                           <---------ZAT18      --------->ANAC46                                           --------->ZAT18      --------->ANAC58                                        <---------ANAC58        --------->ANAC58                                  <----------DOF2           --------->ANAC55(2)                    <-                                  <---------DAG2       ----------->GT1                             --                     <----------DOF2    <---------ANAC58    <---------ANAC55(2)                <----- --->GLK1(1)    <---------At4g35610     <---------ANAC46   <-------TEIL                        ------   tccaaatgtctcccatttcgctgctttctgttttctctttttgtgtgcagttcaaaccagttacataagcaaagtcttggatagcatacctcatgggctt  13672900                 --------->At4g35610                 <---------At4g35610                 <---------ZAT2                 --------->ZAT2             <---------ALFIN1              ------->GAMYB             --------->AtMYB61           ------>MYB46(1)            --------->MYB46(3)           --------->ZAT2                  --------->SPL7         --------->ZAT18                 ------>MYB83                  --------->LBD16 --------HSFB2a(2)                       --------->At4g35610           ----------->HVH21 ------->HSFB2a(2)                     --------->MYB46(3)             --------->ANAC46   --------->MYB46(3) -----DOF2--------->ANAC46 <----------DOF2--------->MYB46(3)         <---------LBD16     ------>ZmHOX2a(2) --->GLK1(1)--------->ANAC46     <---------MYB46(3)               <---------ARR14(2) <---------ATHB12   tccagcaaatgtccaccacagctcaaactcttttttggttaccaactgcctagtcagtatgtgatgcataacccggaccgagttcaaatgatccaccatt  13673000                                                       --------->ANAC55(2)                                                  <---------AHL20(2)                                                  <---------ICU4                                                  --------->AHL20(2)                                                 <---------ATHB12                                               --------->WOX13(1)   --------->TOE2(3)                                           --------->YAB1        --------->ARR11(3)                                          <---------YAB1         <---------ARR11(3)                              <---------ARR11(3) --------->AHL20(2) --------->TOE1(3)                    --------->ARR14(2)   --------->ARR11(3)     <---------GLK1(1)                    <---------GLK1(1)    <---------ARR11(3)     --------->GLK1(1)                 <--                    <---------ARR14(2)  --------->YAB1<---------LBD16------>ZmHOX2a(1)          -----    <---------YAB1  --------->GLK1(1)  <---------ATHB12<---------ANAC55(2)                      <----   tgcagtatgcttccaaactgagaattctccaatttcttcaaatgatcatcaattaatacgggtttgatatccttaatccagtggaagacagtgtatgcgt  13673100                                                                   *TSS                                                                  ------>ZmHOX2a(1)                                                            =============HOX2a_HOX2a                                                    --------->ATHB12                                                   <---------YAB1 ----------->GT1                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                                   --------->AHL20(1)         ---------->ID1                           --------->AHL20(2)        <-----------HVH21                   ------>NtERF2   <-------TEIL      --------------->AtSPL8               <---------ETT(1)<------ZmHOX2a(2)              <---------- <----------DOF2                           ----------->HVH21------>ZmHOX2a(2)         ------------>CBF -------DOF5.7(2)                      --------->At4g35610 ==============HOX2a_HOX2a --------->ANAC58 ---->DOF5.7(2)                       --------->RAP2.6(2) <---------ARR14(2)         --------->ANAC58 -----MYB52(1)                        --------->DEAR3(1)  --------->ARR14(2)     <-----------HVH21---   taactttcttcgtcccctctatcgttccaagctcaaatagccgctccgacaattttattggatccatcctgtaaaattagagccatcaggcaattctacc  13673200                                                   --------->YAB1                                              --------->ZAT14                <---------ICU4                                             --------->AtMYB61              --------->ICU4   --------->DAG2                      ---------->DOF2                      <---------ATHB12     ----  ---------->DOF2                    <---------AHL20(2)                   <---------GLK1(1)      <--- -ARR10                           ------->TEIL<---------ZAT14             --------->GLK1(1)     <---- ------>LBD16<----------DOF2 --------->MYB52(1)<---------ALFIN1       <---------ZAT6         <-------   cagaaaaagtctcgacttttgttaacaaaaacaacgtatataaaagaccacactcatatagaacagaatatagtggaaatcatttcatagaatggatttc  13673300       <---------At4g35610                                                      <---------AHL20(2)       --------->At4g35610                                                     --------->AHL20(2) <---------ARR14(2)                                                            <---------AHL20(2) --------->GLK1(1)                                                             --------->AHL20(1) ----->HSFB2a(2)              ---------->ID1                                   <---------AHL20(1) ------HSFB2a(2)             <-----------HVH21                         <---------ANAC46 -----ANAC46               <-------TEIL         --------->AtMYB61  <---------GLK1(1)           ------ --GLK1(1)        --------->GLK1(2)     -------->P<---------ALFIN1 --------->GLK1(1)           <-----   gcgaattccagctaaaatagaatccaaaattcgtcgcatactaacctagaccacacttatatagaccagaattcagtggaatttatttcatacaatggat  13673400                                                                         --------->ARR14(2)                                                                         <---------ARR11(1)                  --------->AHL20(2)                                     <---------ARR14(2)         --------->LBD16                                                <---------ARR14(1)        <---------ANAC58                                                <---------CCA1(2)        <---------ANAC46         ---------->ID1                       <---------ANAC55(2)   ---------        <---------ANAC58   --------->HSFB2a(1)                        <---------ANAC58      <--------    <---------ARR14(2)     <---------HSFC1(2)       ------>NtERF2     <---------ANAC46     --------->AHL20(2)    <---------GLK1(1)      --------->HSFC1(2)--------->TOE2(3)    <----------DOF2          <---------AHL20(2)    --------->ARR14(2)     <---------HSFB2a(1)     --------->DEAR3(1) <---------ANAC58    <---------AHL20(1)    --------->GLK1(1)  ----------->GT1       --------->TOE1(3)---------->ID1      <----------DOF2   - --->ARR14(2)     <---------AHL20(2)    <---------MYB52(2)   <-----------GT1 ------>ZmHOX2a(1)     -- ----ARR14(2)  --------->YAB1 <-------TEIL -------->P <----------DOF2 --------->ANAC55(2) --------->AHL20(2)   ttggcgaattccgtctaaaataaaatcgaaaattcgtcgcaaactaaccttcgccgctttgtttatcgctttgcgtatccttccctttgcaaaataattt  13673500                                                  --------->KAN4(2)                                              <---------AHL20(2)                                             <---------AHL20(2)                                    <x                                             --------->AHL20(2)                                    --                     ----------->HVH21   --------->AHL20(2)                       <---------AHL20(2)      --------->AHL20(2)                 <---------YAB1                           --------->AHL20(2)     <---------AHL20(1)                  <---------AHL20(2)                       --------->AHL20(1)     <---------AHL20(2)                 <---------AHL20(1)                        <---------AHL20(1)     --------->AHL20(2)                 --------->AHL20(1)                 ------>MYB46(1)        --- <---------ALFIN1    --------->ANAC46   --------->AHL20(2)                 ------>MYB83       ------- >AHL20(2)        --------->MYB52(1)   --------->YAB1                    <---------MYB59     -------- -ICU4<---------AHL20(2)           --------->AHL20(2)                   --------->ANAC46xxxxxxxxxxxxx -------->LBD16   -------->P  <---------AHL20(2) <---------ICU4       <-----------GT1  --------->YAB1 ------->ANAC46 --------->MYB46(3) <---------AHL20(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cccccaatttaatttgaaacaacccgacccattttttttaaatataattaaatattcccataaatgactaattaacccaactaataaaataacaattaaa  13673600                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           --------->LBD16                                                                         <---------LBD16                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        -------->P                                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       --------->MYB52(1)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      ------>ZmHOX2a(1)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    --------->YAB1                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                            ------>MYB83            <xxxxxxxxxxxxxxxxsmallRNA(i)                                            ------>MYB46(1)        <<<<<<<<<ARR1                                 <---------ATHB51                  <<<<<<<<<ARR2                                 --------->AHL20(2)                <xxxxxxxxxxxxxxxxsmallRNA(i)                              --------->AHL20(2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------AHL20(2)                    <<<<<<<<<ARR1    <xxxxxxxxxxxxxxxxsmallRNA(i) <---------AHL20(2)    --------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(s)  --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <<<<<<<<<ARR2  --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AtMYB61   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(i)  --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->LBD16       <---------YAB1      --------->MYB46(3) <---------MYB52(2)                     xx ------>ANAC46    <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->DOF2--------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <x ->AHL20(2)   <---------------AGL15   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxx>smallRNA(si3)--------->AHL20(2)----------->RAV1(1)--------->MYB52(1)    <---------ATHB12   ccgcaagtcaaaaatactattttatgaataaataaataattcgaccaacaaaaccaaaaataactaacaatcctaaccgggttccaataaccaaaaaaac  13673700  Previous    Next  AGI:  At5g35420.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to unknown protein (gb|AAD56332.1) Range:  from: 13672425    to: 13673167    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version