Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------YAB1                                                                   --------->YAB1                                                              --------->TOE2(3)                                                              <---------DAG2                                         --------->YAB1    <-----------GT1    --------->At4g35610   <                              <---------AHL20(2)         <-----------GT1      --------->ZAT2       <x              --------->YAB1 --------->AHL20(2)         <---------ICU4   ---------->DOF2           --             <---------YAB1 <---------YAB1   <---------AHL20(1)   <---------YAB1        ----------->HVH21   cgttcgtcttctactatcatattgtgaagtattatatatgctcgcataatatttctaattttcaccttatcatgaaaaagagctggatgtttgacaatgg  13489300                                  <---------ARR11(3)                                  --------->ARR11(3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                            --------->ANAC46   <---------HSFC1(2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          --------->ANAC58     --------->HSFC1(2)      <---------ANAC58    --------->ANAC58    --------->ANAC58      <---------ANAC58   --------->ZAT18      --------->ANAC58     --------->ZAT2      <---------ZAT18 --------->ANAC46                        <-----------GT1     <---------ZAT2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------DAG2 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <----------ID1                     <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <----------DOF2                ---------->DOF2 ------->MYB52(1)   ---------->DOF2 <---------ICU4                 --------->AHL20(2)   caaaccgagcttgcaaaactccaaaagcacgctcaacatctttacgacaagcttcttgagttatagcaaataaagaagctttatcaccttgtggaattga  13489400                                                                                                -----                                                                                                -----                                                                                      <-----------GT1                                                                                  ------->TEIL  <----                                                   --------->ANAC58            <---------ANAC55(2)                                        <-----------HVH21         ----------------------->TaNAC69(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ANAC55(2)     ----------->GT1      <------ZmHOX2a(1)        --------->ANAC58      --------->WRKY12  <---------LBD16   <---------WOX13(1)   <---------TOE2(3)<---------MYB52(1)--------->YAB1--------->WRKY45<----------DOF2 --------->ATHB12<-----------------AG<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->WRKY38(1)    -----   aattgattggataaatgtaaaccatttaggataaattccatctgtgaggtagtaagccaaattatagtcttctcgttgactacgtatttcactttcggag  13489500                                                                                                    -                                                                                                   --                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                        <---------CCA1(2)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  ------->MYC2   ----                                                                                  ------->MYC3   ----                                                                                  <-------MYC2   <---                                                                                  <-------MYC3  <----                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(1)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------->GT1                                           <---------LBD16   <---------ANAC58---- ---->ZAT2 <---------AHL20(2)                                 ----------->RAV1(2)<---------ANAC58<--- ---->GLK1(1)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------------- -----ZAT2 <---------AHL20(1)           --------->YAB1   <---------TOE1(3)       >>>>>>>>CAMTA3 ----- ---->At4g35610--------->YAB1      <------ZmHOX2a(2)     <---------TOE2(3) ---------->DOF2   --------   ctcgaccttgtaatatatcatcaaaaactggtgagcgatcaagaatattgatatagtttaaggtacctggaggtccaaaaaacgcgtgccatatccagag  13489600                                                                                                    <                                                                                                   xx                                                                                                   xx                                               ------->PIF5                                        --                                               <-------MYC3                                        <-                                               ------->MYC4                                       ---                                               <-------PIF5                                       ---                                               ------->MYC2                                       ---                                               ------->MYC3                                       ---            ------->GAMYB                      <-------MYC2                                       ---            ============================================MYC_MYB                                   xxx           --------->MYB46(3)                  <-------MYC4                                      ----      --------->ANAC58                        =========================bZIP_DOF                 xxxxx      --------->ANAC58                        <---------ANAC46                                 ------ -------------------->WRI1                  <---------ALFIN1                                   <xxxxx ---->ZmHOX2a(2)                           ========================HOX2a_HOX2a                 ------ ----ZmHOX2a(2)                          <---------ARR14(2)                                    <xxxxx ----->AGP1--------->DEAR3(1)            --------->ARR14(2)                                    ------ ------ARR14(2)                        ------>ZmHOX2a(1)                                      xxxxxxx xxxxxx>smallRNA(se3)                ----------->RAV1(2)                                     xxxxxxxx ----->ARR14(3)                  <<<<<<<<<MYB2--------->TGA1a                                -------- ----->ARR14(2)                <------MYB83------>ZmHOX2a(2)                                <-------- ------ARR14(3)                <------MYB46(1)<---------O2                                 <xxxxxxxxx -----GLK1(1)              <---------MYB46(3) --------->O2                                xxxxxxxxxxx ----->ARR11(3)            ======================RAV                                      <xxxxxxxxxx ------ARR11(3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ------>ZmHOX2a(1)           <xxxxxxxxxxxx ->AGL1    <---------MYB52(2)  <---------MYB46(3) <---------CCA1(2)                     <xxxxxxxxxxxx ---->GLK1(1)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <----------DOF2            <xxxxxxxxxxxxx ->LBD16 --------->MYB52(1)<-----------RAV1(1)<---------TGA1a                          xxxxxxxxxxxxxx   atcttgggaagcaacgacctctaaaacgattgttggttttcctgatccacgtgtatattgtcctttccaaacagtgagagagaacaaaaatcaaatcaag  13489700 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->NtERF2 --------RAP2.6(3) ------>RAP2.3(2) ------>RAP2.6(2) ------>DEAR3(1) ------>RAP2.3(3) ------>ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----->RAP2.3(1) xxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ANAC46 xxxxxxxxxxxsmallRNA(s) --->ANAC58         --------->HSFB2a(1) xxxxxxxxxxxxxxxxxxsmallRNA(i2) --->ANAC58         --------->HSFC1(2)                                                  --------->TOE2(3) xxxxxxxxxxxxxxxx>smallRNA(le3)                                                   --------->YAB1 xxxxxxxxxxxxxxx>smallRNA(le3)                                                --------->AHL20(2) -->DOF2    *TSS    <---------HSFC1(2)                                        <---------AHL20(2) -ATHB12    >>>>>>>>>TBF1                                                    --------->AHL20(2) xxxxxxxxxxxxxxsmallRNA(si3)                                          ----------->GT1   --------->TOE1(3) xxxxx>smallRNA(i)  <---------HSFB2a(1)                             <------------CBF    --------->YAB1 xxxxxxxxxxxxxsmallRNA(le3)                                       <---------AHL20(2)   <<<<<<<<<ARR1 xxxxxxxxxxxsmallRNA(fl3)                                        --------->AHL20(2)    <<<<<<<<<ARR2 xxxxxxxxxxxsmallRNA(le3)            ------->TEIL            --------->AHL20(2)   <-----------GT1 <-- xxxxxxxxxsmallRNA(i2)  <---------ANAC46      <---------AHL20(2) <---------AHL20(2)------------>CBF xx>smallRNA(s)>>>>>>>>>TBF1    ----------->GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------   ccgccattgttgaagaagaagaagtttcttagataagtgaatctcaaatttatgtcaaaacaaatatttaaattgcaaaataaatcacaatcttaaagaa  13489800                                                                                          <---------ARR14(3)                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)                                                                            --------->ARR14(2)                                                         --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------ATHB12                      <---------ARR14(2) <---------GLK1(2)--------          --------->SPL7                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------RVE1(1)       --------->TOE1(1)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------CCA1(1)       --------->TOE2(1)                        --------->REM1(2)           <---------ARR14(2)   --------->ARR11(3)                        <---------ANAC58      <---------AHL20(2)     --------->ARR14(3)   <---------ARR11(3)                        <---------ANAC46      --------->AHL20(2)     <---------ARR14(2) -------ATHB12 --------->LBD16               <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) >DOF2--------------->AtSPL8         ---------->DOF2<---------ANAC46--------->ATHB12      --------->ARR14(2)   atcaagacctcgtactccccaattagtctagagagaagagaaagctatcgtgtagagtggatttggagattaattgcagatttggaattgaagatattct  13489900                                                                                        <xxxxxxxxxxxx                                                                                  --------->DAG2   <x                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                               ---------->DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxx                              --------->AHL20(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         ----------->GT1---------->DOF2       <---------YAB1     ---------->DOF2----- ---------->DOF2    --------->DAG2 --------->AHL20(2)      --------->ICU4 --------->CCA1(2) xxxxxxxxx ->GLK1(2)         ---------->DOF2--------->AHL20(2)--------->CCA1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gagaaaagtttttttcttcgataaagtgagaaaaaaataaaaaaaagagaaaagagatgggataatgagagagaagagatgggaaaaggagagagaagag  13490000                                                                           <---------------AGL15                                                                           --------------->AGL15                                                                           <---------MYB59                                                                          ----------------->AGL2                                                                          ----------------->AGL1                                                                          <-----------------AG                                                                          ----------------->AG                                                                          <-----------------AGL1                                                                          <-----------------AGL3                                                                          ----------------->AGL3                                                                          <-----------------AGL2                                                                    ---------->DOF2                                                                   <---------AHL20(2)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               <---------------AGL15       <---------                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      <------------MYB.PH3(2)                                            <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------ZmHOX2a(1)                         ----------->GT1 --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          --------->AHL20(2)             --------->AHL20(1)    --------------->AGL15  <---------MYB52(2)   <---------At4g35610  --------->DAG2   <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->At4g35610---------->DOF2   --------->AHL20(2)    ----------------->AGL3  <---------MYB59 <---------------------WRI1      <---------ANAC55(2)          =============================MADS_MADS xxxxxxsmallRNA(se3) <---------AHL20(2) <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->MYB59 xxx>smallRNA(se3)  --------->AHL20(2) <---------AHL20(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -- xxxxx>smallRNA(si3)<---------AHL20(2)--------->YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --- ---->CCA1(2) ----------->GT1    ----------->GT1  ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   atggccgatgaaaaaaatgtaattaaaaggtaaataagtaaaataatttatctaaagtgtcttctccatttaaagtgcctaattaggaactaactttcaa  13490100                                        <------ZmHOX2a(1)                   <---------AHL20(2)                                    <---------YAB1                      <---------AHL20(2)                                  --------->YAB1                        --------->AHL20(2)                                 <---------YAB1                        <---------AHL20(2)                               <---------ICU4                      <---------YAB1                               --------->YAB1                    <---------AHL20(2)            --------->ANAC58   -------->HAHB4                    <--------HAHB4            --------->ANAC58   --------->ATHB51                  -------->ATHB1            --------->ANAC46  <---------ATHB12                   <---------ICU4            --------->ANAC55(1)<---------AHL20(2)                --------->ATHB51            --------->ANAC55(2)<--------HAHB4                    -------->HAHB4            <---------ANAC55(2)-------->ATHB1                    --------->YAB1         <---------AHL20(2)            ----------->GT1   <---------ATHB51                  --------->ICU4      <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <---------ATHB51    --------->AHL20(2)         <---------ATHB12     --------->ICU4                    <---------YAB1---------->DOF2 -DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->AHL20(2)<---------TOE1(3) ------->DAG2                 <---------YAB1         ---------->DOF2--------->AHL20(2) <---------YAB1 ------->DOF2              <---------YAB1   ----------->GT1  <---------AHL20(2)<---------TOE2(3)  ---   aaaagtgtctaatcacgtaatattctcttctaattattatgaggagaagaaaaacaaaagtttttaattattatttattttaaagttttattatttgttt  13490200  Previous    Next  AGI:  At5g35207.1    Description:  transposable element gene. pseudogene, similar to simiar to ribosomal protein, blastp match of 45% identity and 6.7e-47 P-value to GP|19571128|dbj|BAB86552.1||AP003566 simiar to ribosomal protein {Oryza sativa (japonica cultivar-group)} Range:  from: 13488960    to: 13489712    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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