Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ARR11(3)               <---------ARR11(3)                                                               -----           <---------ANAC55(2)                                                               --------           --------->ANAC55(2)                                                               --------           --------->ANAC58                                                                --------->MYB52(1)           --------->ANAC46                                                           --------->ZAT18    --------->TOE2(3)                               <---------ICU4                    <---------ZAT18  <---------YAB1                                    --------->YAB1          ----------------->AGL1 ------->WRKY18(1)    <-----------RAV1(1)        --------->WOX13(1)   ------>ZmHOX2a(1)  <---------MYB52(2) --->SPL7  --------->ANAC58                   --------->TOE2(3)  ---------->ID1 --------->ARR14(2)   ggtcatccttgatacgaaatcttactgttgtattgttcatgacaataacgtcaatcttcacagttttgtctcctaatgtccatatttgttcactaacgca  13488400                                                      <---------HSFB2a(2)                                                      --------->HSFB2a(2)                                                --------->HSFB2a(1)                                                <---------HSFB2a(1)                    <----------DOF2            --------->ARR11(3)            --------->MYB52(1)                 <---------ARR11(3)                     --------->MYB46(2)           ------->GAMYB                       --------->ARR14(2)       --------->LBD16           <---------SPL7 --------->HSFB2a(2)  <-----------ARR10       --------->ANAC58           <--     ------>ZmHOX2a(1)    <---------HSFB2a(2)  <---------ARR14(2)      --------->ANAC46<------MYB83<- -->TEIL  <---------MYB52(2)                  <---------GLK1(1)        --------->ANAC58<------MYB46(1) ->ANAC58 --------->MYB46(3)                  --------->GLK1(1)       <---------LBD16 --------->MYB59 ->ANAC58 <---------MYB55(2)                <------ZmHOX2a(1) --------->ALFIN1      <---------MYB52(1)   tgtattcctccaacgaacggagcttttgctagaaactttccaactaggaaatcttcccagaggggttttgcatccgcaaacacactgtttggtattctcg  13488500                                                                            --------->GLK1(2)                               --------->ZAT6                              <---------GLK1(2)                              ------>MYB83                              --------->LBD16                              ------>MYB46(1)                <---------ALFIN1                       <                              -------->P                     --------->AtMYB61       <---------REM1(1)           <---------ATHB12 <---------MYB111(1)             --------->MYB46(3)    <-----------RAV1(1) -------MYB46(3)            --------->AtMYB61             <-----------GT1 <------ZmHOX2a(1)         - ------GAMYB        ------>ZmHOX2a(1)<----------DOF2    <-----------GT1<---------LBD16       <-------   tcgttggcatcccatcaatttcctctactaccaactctacttttgtttcaacttcgtttttcaccactgctacccaggaatcttgtgttgtagttgtgtt  13488600                                                                                       --------->AtLEC2                                                 ------>ZmHOX2a(1)             --------->ANAC58             <---------YAB1                     <---------ALFIN1               --------->ANAC46 ---------ICU4       --------->ARR11(3)      <-----------GT1                   --------->ANAC58 -------->ATHB12  <-----------GT1          <-----------GT1                 ------>ZmHOX2a(1) --ZAT6     --------->AHL20(2)      ------>ZmHOX2a(1)                 <---------At4g35610   agtgattacaacatttttattcacatcttgagttattcctgcaattttctcctcccctacattctgtttctcatctccttcaagcctccctgcaatctgt  13488700                         --------->MYB46(3)                       --------->MYB52(1)                      <---------ALFIN1                      --------->AtMYB61                     --------->MYB46(3)                                                          ----                     <---------MYB55(2)                                                          <---            ------>ZmHOX2a(2)                                                                    <---           <------ZmHOX2a(2)                                                                    <----           --------->CCA1(2)                                                        --------->LBD16 <          <---------AGP1------>MYB46(1)                                         <---------ARR14(2)<--          --------->ARR11(3)                                                    --------->ARR14(2)<--          <-----------ARR10                                             --------->LBD16        <-----          --------->AGP1------>MYB83                                   --------->LBD16<---------ALFIN1          --------->ARR14(2)                                          <---------HSFB2a(2)     <------          <---------ARR11(3)        <---------YAB1                    <---------LBD16<---------ALFIN1          <---------ARR14(2)      --------->YAB1                      --------->HSFB2a(2)     -------         <---------CCA1(2)       <---------YAB1                  <----------TaMYB80--------->ANAC46--   ttctcatcttcagatctgatcaaaccacccgtcttatcatcatccacagttaacacagtcccttctgatattcccggactcaaatccccaacttccagcg  13488800           --------->LBD16           ------>NtERF2           <---------RAP2.3(1)           <---------ATERF1(1)         <---------LBD16   <---------ARR14(2) ----->ATERF1(1)      *TSS ---NtERF2<---------DEAR3(1) ------LBD16--------->ATERF1(1) -----RAP2.3(1)   --------->ANAC58 ------NtERF2     --------->ANAC58 -------DEAR3(1)<---------ANAC46                             <-----------GT1                 -------- -------ANAC46 <------NtERF2                      --------->ARR14(2)                        <-------- ----DEAR3(1)<---------ATERF1(2)                  <---------ARR11(3)              <------NtERF2 ----- ---At4g35610--------->ATERF1(2)     <----------DOF2------>ZmHOX2a(2)         --------->ANAC46  ----- -->At4g35610<---------DEAR3(1)    --------->HSFC1(2)    <----------DOF2      --------->ANAC58  <---- ------->LBD16------>NtERF2        <---------HSFC1(2)    <---------DAG2       --------->ANAC58  <----   gcggagatacctccggcggcatggaacttgctgaagaagctttgaaaccctagatcgcccttttttcgcctcagagcaaaacgcagcgttttctataata  13488900                                                                                                    <                                                                                                  ---                                                             ----------->GT1           <---------TOE2(3)   <---------ZAT6                                            <----------ID1            <---------TOE1(3) ->YAB1--------->AHL20(2)                                 --------->DAG2   <---------ICU4        <--- -YAB1 <---------AHL20(2)                                ---------->DOF2  --------->ICU4       ------ ---->AHL20(1)                                         <---------AHL20(2) <---------YAB1       <----- ---->AHL20(2)             --------->MYB52(1)     --------->AHL20(1)     <---------TOE2(3)    ------- -----AHL20(1)       <-----------GT1              <---------AHL20(1)    --------->MYB52(1)<---------WOX13(1) -----AHL20(2)<------ZmHOX2a(1)                --------->AHL20(2)  --------->AHL20(2)  <---------YAB1   aattagtgttttattaggaattttaaacatacctgatataacaaaaaaaaaaaatattaaaaagcgaaaaaaaataacgattacattttaagattgatta  13489000     <---------TOE2(3)    --------->YAB1    <---------ICU4                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ICU4                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->YAB1                                                          <----------DOF2 ---------YAB1                                                      <---------LBD16               --- ------>YAB1                                                        xxxxxxxxxxxxxxxx>smallRNA(i) ---- ------YAB1                       <----------DOF2              xxxxxxxxxxxxxxxx>smallRNA(i)      <--- --->YAB1                       --------->At4g35610           --------->ANAC58                 ------ ----ICU4                       <---------At4g35610           --------->ANAC58             <---------At5g28300 -->ICU4                 --------->MYB46(3)                <------ZmHOX2a(2)         --------->YAB1   tgataataatgttttcatacatgttcaacaaatcagctttcaattcttcatgtttaatccgatcacgaactcgggctctaatggccatcatattaccgag  13489100         <---------ARR11(1)         --------->ARR11(3)         --------->ARR14(2)                                                                  xxxxxxxx         <---------ARR11(3)                                                            --------->ZAT14         <---------ARR14(2)                                             --------->CCA1(2)  <xxxxxxxxx        <---------CCA1(2)                                <---------------AtSPL3        --------->ZAT18        --------->GLK1(1)                                --------------->AtSPL3        <---------ZAT18     <------NtERF2                                    --------->HSFB2a(2)              <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------HSFB2a(2)  --------->TOE2(3) xxxxxxxx ------>CCA1(2)                                      <---------LBD16   --------->ARR14(2)------->TEIL ----->ARR14(2)                                   <---------GLK1(2)    <---------ARR14(2)<xxxxxxxxxxx ------ARR14(2)           --------->GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC46 ----->ARR10         ----------->GT1      --------->CCA1(2)<---------SPL7<-------TEIL--------------->AtSPL8   atttggaggcatatctatagcataggtgaaatctacttgtgaagagatggctgattctggatgtacgaattcagatacatcaaactgagtgtacccatct  13489200                                                                     <---------YAB1                                                                   --------->YAB1              --------->YAB1                                  --------->TOE2(3)             <---------YAB1                                   <---------DAG2 xxxxxxxxxxxxxxx>smallRNA(se3)           --------->YAB1    <-----------GT1    --------->At4g35610   < xxxxxxxxxxxxxxsmallRNA(i2)   <---------AHL20(2)         <-----------GT1      --------->ZAT2       <x xxxxxxxxxxxxxxx>smallRNA(l2)--------->AHL20(2)         <---------ICU4   ---------->DOF2           -- xxxxxxxxxxxxsmallRNA(le3)  <---------YAB1   <---------AHL20(1)   <---------YAB1        ----------->HVH21   cgttcgtcttctactatcatattgtgaagtattatatatgctcgcataatatttctaattttcaccttatcatgaaaaagagctggatgtttgacaatgg  13489300  Previous    Next  AGI:  At5g35205.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 13484134    to: 13488822    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g35207.1    Description:  transposable element gene. pseudogene, similar to simiar to ribosomal protein, blastp match of 45% identity and 6.7e-47 P-value to GP|19571128|dbj|BAB86552.1||AP003566 simiar to ribosomal protein {Oryza sativa (japonica cultivar-group)} Range:  from: 13488960    to: 13489712    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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