Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ARR11(3)                                                                                 <--------HAHB4                                                                                 <---------ICU4                                                 --------->ARR14(2)              --------->YAB1                                                <---------CCA1(2)               <---------ATHB12                                                --------->GLK1(1)               --------->ICU4                                                <---------GLK1(1)               <---------YAB1                                      <---------ANAC58                  <---------ZAT18                                  <---------ANAC58                     <---------ANAC58                                  <---------ANAC58  --------------->AGL15 ------->TEIL                                 --------->ZAT2---------->TaMYB80      <---------ANAC58                 ------>MYB83   <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------ICU4                 ------>MYB46(1)------>ZmHOX2a(1)<---------ARR14(2)   --------------->AtSPL8   <---------ANAC58   ---------->DOF2 <---------ANAC58                <---------------AtSPL8       <x   <---------ANAC58  <---------AHL20(2)<----------DOF2                <---------------AtSPL3       <-   tttctgcgtttctatcaccaaatttaaagccatcctgcttgctttctggcatatccacttagagacagagattgtgtacctcatcattatctcatcttcg  13201600                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <------NtERF2                       --------->ATERF1(1)                      <---------ATERF1(1)                      ------>NtERF2                     <---------RAP2.6(2)                                    --------->MYB52(1)-------                  xxxxxxxxxxxxxxxx>smallRNA(s)                         ----------->RAV1(1)--------->ANAC58            ---------->DOF2                                   --------->ZAT14            <-------TEIL           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->AtMYB61                             <---------ATHB12--------->ANAC58--------->ARR14(2)         ----------->RAV1(1)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC58        --------->ANAC46<----------DOF2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->SPL7       ----------->RAV1(1)     <---------ANAC58   --------->ANAC46     --------->ANAC58<---------ARR14(2)     <---------ZAT14 <---------DEAR3(1)           --------->ANAC58    <---------LBD16<---------------AtSPL3     --------->ZAT14--------->ZAT18               --------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ZAT18<---------ZAT18          --------->TOE1(2)<---------ZAT14       <---------ANAC46 xxxxxxxxxxxxxxxsmallRNA(i)    <---------ANAC58  --------->LBD16--------->YAB1     <------NtERF2  <-- ----------HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->HVH21--------->LBD16<---------SPL7   atgtcagtccaccacaaagaagggcgccttcttgcttcttctctgaacatccgagcaatgaccctatagtgacccgcataagggcatcgggtacggcaaa  13201700                                               --------->ZAT18                                             ------->MYC3                                             <-------MYC3                                        ----                                             <-------MYC2                                        ----                                             ------->MYC4                                       xxxxx                                             ------->PIF5                                       xxxxx                                             <-------PIF5                                       xxxxx                                             ------->MYC2                                     xxxxxxx                                             <-------PIF4                                     -------                  <---------ANAC58           ------->PIF4                                  xxxxxxxxxx                  <---------ANAC46    ------->TEIL                                     xxxxxxxxxxxxxx            --------->DAG2      xxxxxxxxxxxxxxxx>smallRNA(s)                           <xxxxxxxxxxxxx --->DOF2  ---------->DOF2<---------AtLEC2 ------------>OsbHLH66     ---------->DOF2   --------->ANAC58 ----ZmHOX2a(1)   <---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------HVH21    --------->ANAC58   ggaccgaatgagaaaaagttgctcgaatgcatggccaatggaccgcatgtgcccaaaaaatgctaaactgtcaaagggcaaacatgggcaagaatgggca  13201800                                                               --------->DREB2C(2)                                                               --------->DEAR3(1)            <-------                                                               ----------->HVH21             <-------                                                              --------->DEAR3(2)            <xxxxxxxx                                                              --------->MYB46(3)           ------>NtERF2                                                            <---------ARR14(2)         <---------ANAC58                                                            --------->ARR14(2)         <---------ANAC58                                                          --------->LBD16              <---------DEAR3(1)                                                         --------->ANAC46           xxxxxxxxxxxxxxxxx                                                         <------NtERF2        --------->ANAC58                                                         --------->ANAC58     --------->At4g35610                                  ------>NtERF2          --------->ANAC58     --------->ANAC58        --------->ICU4          <------NtERF2           --------->At4g35610   --------->bZIP60(2)      ---------->DOF2           --------->ATERF1(1)     <---------At4g35610   <---------At4g35610 ----->ANAC58                   <---------ANAC46        ------>NtERF2 --------->ALFIN1<---------LBD16 ----->ANAC58    --------->DAG2------>NtERF2            --------->LBD16     <---------ALFIN1<------NtERF2 xxxxxxxxxxxxxxxx>smallRNA(se3)<---------At4g35610      <------NtERF2------->MYC3  <---------TGA1a xxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------DEAR3(1)     <---------LBD16<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16      <---------DEAR3(1) --------->ZAT18<---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(si3)<---------LBD16       --------->ATERF1(1) <---------ZAT18<---------ANAC58 -->ZAT18       ---------->DOF2--------->LBD16      ------>NtERF2    <-------MYC3  ================== xxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC46      <---------ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(se3)   <---------ANAC58       --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(se3)     <---------ANAC58       --------->ANAC58<---------DDF1--------->ANAC46 ------   cgaatgggcaaagatgggaaaagtttggcatgccgcgggcgaagtttgccacgctggccgcggaaccgacatgtgtggacacctcacttgcggtgccatg  13201900                                                                                                   xx                                                                                                  ---                                                                                            ---------                                                                                            ---------                                                                                            ---------              --------->TOE2(3)                                                             ---------              --------->TOE1(2)                                                             ---------            ------>MYB83                                                                   ------>NtERF2            ------>MYB46(1)                                                               --------->DEAR3(1)          --------->MYB46(3)                                                              <xxxxxxxxxx          --------->AtMYB61                                                              <------NtERF2          <---------MYB111(1)                                                           ------>NtERF2          --------->DEAR3(1)                                                           --------->bZIP60(1)          <---------MYB55(2)                                                           <---------ETT(2)          <---------MYB46(2)                                                           --------->ETT(2)       <-----------GT1                                                               <-----------HVH21    --------->ANAC58                         --------->DEAR3(1)                   ----------->RAV1(2)    --------->TGA1a                         <------NtERF2                         <---------O2  <----    --------->ANAC46                        --------->ATERF1(1)                   --------->O2 ------    --------->ANAC58                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------At4g35610    =================MYC_MYB  --------->At4g35610  ----------->HVH21              --------->At4g35610 --ANAC58 <---------MYB111(2) ----------->RAV1(2)<---------ZAT2              <---------ETT(2) xxxxxxx --ANAC58--------->MYB46(3)   <---------At4g35610--------->At4g35610         <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(i)     --------->ARR14(2)--------->At4g35610             --------->LBD16<---------ALFIN1 xxxxxx>smallRNA(i2)     <---------ARR14(2)<---------At4g35610     ----------->HVH21<-----------RAV1(1) ====================MYC_MYB<---------RAP2.6(2)  <---------At4g35610    xxxxxxxxxxxxxxxx>smallRNA(i)x --->AtLEC2 -------->P  xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>NtERF2   cgactcaagtcaccaaccttggagtcgaattcggctgagtcttggagccgaagctgatggggcaatggaatgacacccgtagacacctgtcgccacgcca  13202000                                                         <------NtERF2                                                        <---------DEAR4(2)                                                        <---------DEAR3(2)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       --------->ALFIN1                                                      --------->ATERF1(1)                          <---------RAP2.6(2)         <---------ABI4(1)                         --------->At4g35610       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->SPL7            --------->ATERF1(1)                        --------->ALFIN1           <---------ANAC46                       <---------RAP2.3(3)        <---------At4g35610                      <---------ANAC58            <------NtERF2                    --------->ALFIN1         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   ------->MYC2              ----------->HVH21                   <-------MYC2             <-------MYC3<---------ORA47(2)            <-----------HVH21               xxxxxxxxxxxxxxxx>smallRNA(i)         ----------->RAV1(2)                ------->MYC3<---------ATERF1(1)  --------->LBD16  ------->MYC3            <---------O2<---------DREB2C(2) xxxxxxxxxxxxxxxx>smallRNA(s)    ====================MYC_MYB *TSS    --------->O2<---------MYB46(3)    <---------TGA1a--------->ALFIN1 xxxxxxxxxxxxxx>smallRNA(s)     <------------AtMYB77 ------>NtERF2               <------NtERF2 ------>DEAR3(1)   <-------MYC3 =====================MYC_MYB                     ------>NtERF2 >bZIP60(2)<-----------RAV1(1) <---------At4g35610--------->At4g35610 <---------RAP2.6(3) >O2   <---------ALFIN1<---------PCF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->ZAT18 >ANAC58 <---------O2<---------------AtSPL3--------->O2<---------DEAR3(1)    <---------ANAC46 >ANAC46 <---------At4g35610   --------->At4g35610<---------ZAT2      ------>NtERF2 >ANAC58 --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  >>>>>>>>>>DREB1C xxxxxxsmallRNA(i)<---------TGA1a------->GAMYB    --------->ZAT2     >>>>>>>>>>DREB1A -----ATERF1(1)   =======================MYC_MYB  --------->ATERF1(1)--------->DEAR3(1)             < --->DEAR3(1)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2) xxxxxxxxx>smallRNA(s)<---------ANAC58     --------->ALFIN1          ----------->HVH21 --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(s)<------NtERF2  <-----------RAV1(1)       >>>>>>>>>>DREB1B ----------->TBP   tcgcccgagacacctgtcgcatgtgggtgcggcaactgtctagacatgtggcagcgggcggtgctacatggccgaccttgggcggactataaaatgatgc  13202100                                                                                       --------->ARR14(2)                                                                                       <---------ARR14(2)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        --------->ANAC58        -----                                                               --------->SPL7       --------->LBD16             <---------YAB1                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <----     <---------At4g35610                        ----------->HVH21       --------->ANAC58   ---------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------------->AGL1   tattctcagcccattttcatttttgaaggcgagagagactgtaaggctgtctgaccgataactcgtccgaaaccaagaaaacttgcccgaattcagtaaa  13202200                                                                                 ----------->HVH21                                                                                 --------->WRKY12 ---                                                                                 <---------ETT(2) <--               ---------->DOF2                                                   --------->DEAR3(1)           <---------HSFB2a(2)                                                   --------->ETT(2) ---     <-------PIF5                                                                --------->WRKY38(1)     ------->PIF5                                                               <------NtERF2     <--     --------->LBD16     ------>ZmHOX2a(2)                                      --------->ATERF1(1) ---->ARR11(3)==================HOX2a_HOX2a                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -----ARR11(3)<------ZmHOX2a(1)       <---------AHL20(2)           ------>ZmHOX2a(1)             <--- ->GT1     --------->HSFB2a(2)  --------->ZAT18    --------->WRKY18(1)<---------ZAT6  --------->At5g28300   tcttgcccgtggtctaggaaagtctgatcgtaagtgcaaaataatcgtatgtggtcaagagaactcgtcctagtgagaagtcgtcgaccgtgattaagag  13202300                                  <-------GAMYB                                  <---------At4g35610                                  --------->At4g35610                                 --------->MYB52(2)                              <-----------HVH21        ------>NtERF2     <---------ARR11(1)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------NtERF2       --------->ARR14(2)      --------->LBD16     --------->GLK1(2)     --------->ANAC58     ------->TEIL                                   <---------ZAT6     --------->ANAC46     <---------ARR14(2)                          --------->HSFB2a(2)     --------->ANAC58    <---------ARR14(1)                           <---------HSFC1(1)    <---------LBD16      <---------GLK1(2)                            --------->HSFC1(1) ------>ARR14(2)       <---------MYB59                                <---------HSFB2a(2)         <-- -------ARR14(2)      ----------------->AG                   <---------ANAC58                xxxxxxxx ------>GLK1(2)      --------->MYB52(1)                      <---------AtLEC2           --------->AHL20(2) ---------ARR10      -------->P<---------MYB52(1) <------------------------ANAC81<----------DOF2  <-- ------GLK1(2)      --------->MYB52(1)<---------AtMYB61      <---------ANAC58    xxxxxxxxxxxxxxxxxxxx   attctgcccgcgactaaaaaacttaccgaatctgtcagttgtggtcgaattgtgtttttgtttgcatgttttctagagctagtctttagattatatgcat  13202400            --------->TOE2(3)                                                                     <--            --------->TOE1(3)   <---------ANAC58           --------->AHL20(2)                     <-- -------ANAC58            --------->GLK1(2)              --------->AHL20(2)                 <-------- xxxxxxxxxxxxxxx>smallRNA(i2)   <---------ANAC58        --------->YAB1                     <---------ARR11(3) -------ANAC58           <---------GLK1(2)            --------->AHL20(2)            ----------->GT1 < xxx>smallRNA(i2)     --------->YAB1      --------->ARR11(3)                 ------->TEIL  --------->ARR11(3)   gcttactcacttaaacttaactaatcagaatttggcttaagttagaacttgactcttaaaataatatgagcatttgacgaacttgatagttaatatcatt  13202500  Previous    Next  AGI:  At5g34860.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06908.1); similar to putative transposon protein [Oryza sativa (japonica cultivar-group)] (GB:AAR88574.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) Range:  from: 13199922    to: 13202001    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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