Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------------AtSPL8                                                                  <---------YAB1                                                                <---------AHL20(2)                        ----------->GT1                         --------->AHL20(2)                        <---------ZAT6                          --------->ATHB51                  <---------TOE2(3)                      <-------GAMYB                  <---------TOE1(3)                      <---------ANAC46                           -                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->MYB52(2)                         <-               <---------MYB52(1)         <---------YAB1--------->MYB55(2)                     <-----               <--------P            --------->MYB52(2) <------MYB83 --------------->AtSPL8    <-----              <-----------HVH21      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------YAB1         --------->ARR14(2)  --------->ICU4             <------MYB46(1)          xxxxxxxxxxxxxxxxxxxx         <---------ARR14(2)  <---------YAB1             <---------MYB46(3)     --------->AHL20(2) <--        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <-----------RAV1(1)     --------->YAB1 xxxxxxxxxx   --------->ATHB12 <-------GAMYB  <---------MYB52(1)  <---------AtMYB61 ------->TEIL xxxxxxxxxxxxxxx   tttggttattggaaccggttagggttgtgttataattgttagttattcttggttttgttggttgaattatttatgtactcataaaatagtatttttgact  13087400                         <<<<<<<<<<MYB80                        <---------MYB46(3)                        <------MYB46(1)                        ----------->GT1                        <------MYB83                       <---------AtMYB61                     <---------ANAC58                     <---------ANAC58              <----------DOF2      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <-----------RAV1(1) <---------AHL20(2)    --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <------MYB83    <---------AHL20(2)<--------P  <---------ANAC55(2)     <---------YAB1                    xxxxxxxxx ---------->GT1     --------->ATHB12                    --------->YAB1                    <XXXXXXXXXX --------ANAC46 --------->ATHB12  --------->ANAC55(2)   <---------ICU4            xxxxxxxxxxxxxxxxxxx ----ANAC58  <---------ANAC58   <---------AHL20(2)  --------->AHL20(2)            <---------MYB46(3) ----ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)           <--------P --------- xxx>smallRNA(si3)  --------->MYB55(2)          --------->ICU4                  <---------MYB52(1) -------LBD16<---------ANAC58   --------->AHL20(2) --------->AHL20(2)        --------->ETT(1)<------MYB46(1) xxxxxx>smallRNA(i) <---------MYB46(3) --------->ICU4  --------->ICU4<---------AHL20(2)<XXXXXXXXXXXXX x>smallRNA(i)<---------DAG2--------->AHL20(2) <---------KAN4(2)     --------->AHL20(2)<xxxxxxxxxxxxx   tgcggtttaaatgttgctttattggttggtttaattaagtatttatgggaatatttaattatgttttttaaaaaaatggtcgggttgtttcaatttggta  13087500                  <------ZmHOX2a(1)               <---------HSFB2a(2) <-----------GT1               --------->HSFB2a(2) --------->MYB52(1)                                         <------      <------ZmHOX2a(2)           --------->AHL20(2)                                         xxxxxxxx      ===================HOX2a_HOX2a                        <---------WOX13(1)    <-------GAMYB    --     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ATHB12        xxxxxxxxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------YAB1          --------->ALFIN1 <xx xxxxxxx>smallRNA(i)          --------->AHL20(2)         --------->ICU4        <---------ANAC58   <-- XXXXXXXXXXXMIR845B           --------->ICU4          ------>ZmHOX2a(1)        <---------ANAC58 <---- xxxx>smallRNA(si3)    --------->REM1(2)      <---------AHL20(2)           xxxxxxxxxxxxxxxx>smallRNA(s) >MYB59        >>>>>>>ZML2    <---------AHL20(2)  <-----------GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) XXXXXXXXXXMIR829.1   --------->ALFIN1        --------->AHL20(2)     <---------At4g35610     xxxxxxxx xxxxxxxxxxsmallRNA(si3) ----------->GT1      --------->ATHB51       --------->At4g35610<---------ZAT14   tcagagcgatcacggttctaggatgtgtagaaaaaattaactgatgaattattttcctgatgattgatgtgagatgagctagggtgttagcatactgagg  13087600                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             <---------MYB46(3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ZAT6     <-----------RAV1(1)        <---------ANAC46   <-------GAMYB         xxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ANAC58<---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1        <---------ANAC58<---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1        <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---TOE2(3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              >>>>>>>>>>>>>>>>>LFY xxxxxxxxxxx>smallRNA(i2) <-----------RAV1(1) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                <------ ------->ICU4          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->ARR11(3)        ------- xxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ARR11(3)        <------ xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>ZmHOX2a(1)   --------->TOE1(3)         <---------ANAC58 -------WOX13(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->TOE2(3) --------->At5g28300 --ZmHOX2a(1)      xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC46 xxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->YAB1     <---------ANAC58   attgattatggagtgtttagtcaattgtgtgttgttggagtcctagcatcatcttctccgagccttaaatgatattccactgtaagttgtttgtgatata  13087700                                                    <------ZmHOX2a(1)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                             <-------GAMYB                                            <---------MYB46(3)                                         <---------At4g35610        <---------ANAC58                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <------NtERF2                                       <-----------RAV1(2)    <---------ANAC58   <------NtERF2                                      <---------ZAT18         <---------ANAC58   <---------LBD16   <-     <---------YAB1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------MYB52(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) *TSS<---------ANAC58               -- ---ARR11(3)         <----------DOF2 <---------ANAC46        <-------TEIL <---------ANAC58    <xxxxxx -->ARR11(3)        <---------DAG2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s) ---AHL20(1)       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->At4g35610 <---------ANAC58<------ZmHOX2a(1)   ttcgtttattctagtttcttagccttttgttcttgagtagcgcagatggttagaggagctaagttcgtggtcgtggtcgtggtcgcggtagaggacgagt  13087800                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                             ----------->RAV1(2)  --------->ZAT2                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                            ------>NtERF2         <---------ZAT2                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           --------->DEAR3(1)  <------NtERF2                                                     <---------PCF2            --------->LBD16                                                  --------->ALFIN1            <---------LBD16                                                --------->ALFIN1          <---------PCF2         --------->TOE1(2)              <---------LBD16<-------TEIL       --------->TCP20--------->SPL7     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ALFIN1     --------->ZAT18               <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------HSFB2a(2)        --------->ZAT14 --------->LBD16<---------At4g35610 <---------LBD16 ---->ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------DEAR3(2)    --------->TCP16(1) xxxxxxxxxxsmallRNA(s)    <---------ZAT14<---------ANAC46--------->At4g35610--------->ATERF1(1)     -   cctcgagggtaccagcgagagtgatggctacagtgctacagttgcgcagagtgtgggttcgcagcctgagtttgtggagcccggggctggggacggtctc  13087900                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   --                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --                                                        <---------ANAC46                           <-                                                    --------->ATERF1(1)                            <-                                                    <------NtERF2                                ----                                                   ------>NtERF2                                <----                                                  <---------DEAR3(1)                           xxxxxx                                                  ----------->HVH21                            <-----                                                  --------->ALFIN1                           <-------                            <---------PCF2       --------->ATERF1(1)                         <-------                         --------->ALFIN1      <---------DEAR4(1)                           <--------                   <---------LBD16             <---------DREB2C(2)                        <xxxxxxxxxx                   --------->ATERF1(1)         <---------At1g77200                        xxxxxxxxxxx                  ------>NtERF2                <---------DEAR3(1)    <------MYB46(1)     --------->ATHB12                  --------->At4g35610          --------->ETT(1)      <------MYB83        xxxxxxxxxxxx                  <---------At4g35610   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ----------->HVH21                --------->ATERF1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(i)                <-----------RAV1(2)    --------->At4g35610          <---------AtMYB61  xxxxxxxxxxxxxx               <---------At4g35610     <---------At4g35610          <---------DEAR3(1)xxxxxxxxxxxxxxx               <---------ZAT18         <---------ZAT2   --------->ALFIN1            xxxxxxxxxxxxxxxx>smallRNA(s)           <-----------RAV1(1)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxx           =================RAV     <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------MYB52(1) xxxxxxxxxxxxxxx         <---------At4g35610--------->ZAT18 <-----------RAV1(1)  <---------ANAC58  --------->LBD16---        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <------NtERF2  ------->TEIL     <------ZmHOX2a(1)------        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------HVH21   <---------ANAC46 <---------LBD16<---      xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i) <---------At4g35610xxxxxxxxxx      ---------->DOF2--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC58 <-----------RAV1(2)    --------->ARR14(2)   xxxxxxxxxxxxxxxx>smallRNA(i)  <---------MYB52(1)<----------CDC5--------->ALFIN1    <---------ARR14(2) --------->ALFIN1--------->ZAT2<---------DEAR3(1) --------->At4g35610<---------ANAC46   <---------RAP2.6(3)<------NtERF2--------->ALFIN1--------->ABI4(2)<---------TOE1(2)<------ZmHOX2a(1) ----->NtERF2  --------->ZAT14  --------->ALFIN1<---------DEAR3(2)<-------GAMYB<---------ARR14(2)----   gatgccgatatagctggtgcagccggagtggggactggtggagctggtgtcggtgccggtgtgtatgtcgttggtgctgaggacccaggagtgatgggtg  13088000      <------NtERF2     --------->LBD16   --------->ATERF1(1)   <---------LBD16  ------>NtERF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At4g35610  --------->ZAT2  <---------ZAT2 --------->DEAR3(1) ------NtERF2 -----------RAV1(2) -------->ATERF1(1) -------->ERF1 -------->RAP2.3(1) ---->NtERF2 ------->LBD16                                                                                     -- ------->At4g35610                         --------->ZAT2                                          <- --------ATERF1(1)                         <---------ZAT2                    xxxxxxxxxxxxxxxx>smallRNA(i) --------At4g35610                         ----------->RAV1(2)               <---------SPL7        <- ----->ATERF1(1)                           =======================RAV        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ATERF1(1)                            <---------At4g35610              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxx>smallRNA(i)                    --------->At4g35610             --------->ALFIN1        -- ----DEAR3(1)                         <------NtERF2                    --------->ZAT2              -- --ANAC58                           <---------ANAC58                 <-----------RAV1(2)<---------ATERF1(1) --ANAC58<------ZmHOX2a(1)         <---------LBD16                   --------------->AGL15         -- -MYB46(3)                         <<<<<<<<<E2Fd      <---------MYB46(3)   <---------AtMYB61       -- xxxxxxsmallRNA(s)                 <<<<<<<<<E2Fc      --------->MYB55(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxx>smallRNA(i)           <------MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ZAT14 xxxx>smallRNA(i)            <---------MYB46(3)       ===========================RAV --------->ZAT14 xxxxxx>smallRNA(le3)        <------MYB46(1)<----------CDC5         <-----------------AGL1      <---- xxxxx>smallRNA(fl3)  --------->LBD16 ------>NtERF2   <-----------RAV1(1)--------->ALFIN1       ----- xxxxxx>smallRNA(fl3)<---------HSFC1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ZAT18 x>smallRNA(i)       --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ALFIN1 ------>DEAR3(1)     --------->HSFC1(1) <---------ANAC58            ----------------->AGL1      <---- --->ALFIN1       <---------ARR14(2)<---------ANAC46<---------At4g35610<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---NtERF2    <-----------RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(i)  <---------HSFB2a(2)<---------ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->RAP2.3(1)  --------->ARR14(2)<---------ANAC58<-------GAMYB  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ccgcagccggaggagcacaggttccagaagttggtttggcgggcctgctgaggcagttgttggagaggttaccaggtgtggtaccagtgcaggctccagt  13088100                                             --------->HSFC1(2)                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)                                             <---------HSFC1(2)                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           <------ZmHOX2a(1)                                      <---------ANAC46                                     <---------At4g35610                                     --------->At4g35610                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <---------MYB46(3)                                  <-------GAMYB--------->ARR14(2)           <---------ANAC46     <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ALFIN1        xxxxxxxxxxxxxxxx>smallRNA(i)    ========================================MYC_MYB    =======================================MYC_MYB    ======================================MYC_MYB    <---------O2                <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i)    <---------TGA1a            <------NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->TGA1a            <---------At4g35610    --------->O2             <---------DEAR3(1)<---------ARR14(2)   ------>NtERF2            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->ANAC55(2)        xxxxxxxxxxxxxxxx>smallRNA(i)                                       -------- --------bZIP60(1)     xxxxxxxxxxxxxxxx>smallRNA(i)                                         <------NtERF2 --------ANAC55(2)   --------->ZAT2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   ------>NtERF2 ------->ANAC46      --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxx ------->ANAC58      <---------ZAT2<--------Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxx ------->bZIP60(1)   <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->ARR14(2) ------->ANAC58     ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------REM1(1) -----MYB52(1)    <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ARR14(2) ---->ARR14(2)    <-------TEIL------------>AtMYB77                         --------->At4g35610 -----ARR14(2)   --------->ALFIN1<---------MYB46(3)            <------ZmHOX2a(1)    <------ZmHOX2a(1)   tacgccacgagtggcgaaggtgcagcagagggctgcggttgctgaggaggttccatcttatttgaggacaatcgagcagttgtagaggattggcaccgag  13088200                                             <-----------RAV1(2)                                        <---------SPL7                                        <---------DEAR3(2)                                        <---------MYB46(3)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------ANAC58                                       <---------RAP2.6(2)                                       <---------DREB2C(2)                                       <---------ANAC58                                    <---------DEAR3(1)                                  --------->At4g35610                                  <---------At4g35610                                            <---                                  >>>>>>>>>TAC1                                                  ----                                  <-------GAMYB          --------->ARR14(2)                <---------MYB46(3)      --------->At4g35610     ------------>AtMYB77   --------->At4g35610                  <---------ANAC46      <---------At4g35610    ----------->HVH21       <---------At4g35610                --------->GLK1(2)      <---------ZAT2       <---------At4g35610<---------TOE2(2)                         <---------ARR14(2)     <-----------RAV1(1)   --------->At4g35610<---------TOE1(2)                         --------->ARR14(2) ->DEAR3(1)  xxxxxxxxxxxxxxxx>smallRNA(i)<-------GAMYB   <---------ARR14(2) <-----------HVH21  ------ xxxxxxsmallRNA(fl3)------>ZmHOX2a(1) <------NtERF2 <---------ANAC46     --------->At4g35610<-------- xxxxxxxxxsmallRNA(fl3) <------ZmHOX2a(1)<-----------HVH21        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tatttttctgctggtactagtcctgaggaggctgacagttggcggtcgcaggttgagcggaatttcggttcgaacagatgtccgatggagtatcgggtgg  13088300  Previous    Next  AGI:  At5g34849.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.5e-166 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 13087764    to: 13091987    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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