Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ARR11(3)     --------->ARR11(3)    --------->YAB1   --------->ICU4                                  --------->ANAC46 --------->YAB1                             <--------HAHB4 ---------YAB1                              --------->YAB1                <---------ICU4 ------>YAB1                                <---------ICU4 --------->ARR11(3) ------DOF2        --------->ANAC46         --------->ATHB12              --------->YAB1 -----DAG2       <-----------GT1           --------->ICU4  <---------AHL20(1) ->ID1 ------>ZmHOX2a(2)  <----------DOF2  <---------ATHB12--------->AHL20(1)              <---------AHL20(2)   ttataatgatcttgaaaatttactccatcttttttcttgaactccatcattactcaccatatatattgatttttgatcatcacctatgtctcttaaattg  13007900                                                                          <---------ATHB12                                                                   --------->GLK1(1)                 <---------ICU4                                  <---------ZAT14           --------->ANAC58                                      <---------ZAT18           --------->ANAC58                                      --------->ZAT18        <---------ARR14(2)                                    <---------ANAC55(2)        <---------GLK1(2)            <-----------RAV1(1)     <-----------------------TaNAC69(2)        --------->ARR14(2)    ------>MYB83 <---------At4g35610<---------ANAC46                  <----      --------->ANAC46        ------>MYB46(1)               --------->ZAT14              <---------ATHB12      --------->LBD16        <---------ALFIN1               <---------ZAT14            --------->WOX13(1)     --------->LBD16        --------->MYB46(3)  ------>ZmHOX2a(1)--------->ZAT14   ------>ZmHOX2a(1) ------>ZmHOX2a(1)<----------DOF2  <----------DOF2         <---------MYB52(1)--------->ZAT6     <----   ttcctcccccgatactcaatcttttcttcacccacttctttgttgtgctccttactctccagttaagtgaactccaataactctccttccaatcacttgc  13008000                                                                                 <----------DOF2                                                                                ------>ZmHOX2a(2)                                                                               <---------------------                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                           <---------WOX13(1)                                                                        <---------YAB1                                      <---------AHL20(2)               ------>ZmHOX2a(2)                                      --------->AHL20(2)             <---------ARR11(3) -----ANAC58                         <---------ATHB12                --------->ARR11(3) -----ANAC58                         --------->AHL20(2)            <---------ATHB12   ttcttctcggcttcttcacttccctcatgccttactccaattaataggtgtttctcttcattcttccaaatgatctcattgatcttttgttttcttcctt  13008100                                                                                     <-----------GT1                                                                                 <----------DOF2                                                                                 <---------DAG2                                                                            ------>ZmHOX2a(1)                                              <---------At4g35610     <-----------ARR10             <-----------GT1              --------->ANAC58            <---------ARR11(3)          <--        --------->GLK1(2)                 --------->ANAC58            --------->ARR11(3)          --- ---ANAC81<---------ICU4        --------->ANAC46           <----------DOF2 --------->ANAC46      ----   cttcagaaataatctttacaccttcggctcttgccctccataactcgcatctcatcactctctttttccaaaaatctcctcaacttttttctcactattc  13008200                        ------>MYB46(1)                        ------>MYB83                       <---------ALFIN1               --------->ANAC46                      --------->MYB46(3)              --------->ANAC58                     --------->ANAC58                 --------->ANAC58                     --------->ANAC58             <-----------GT1                --------->GLK1(2)          --------->LBD16                  --------->TGA1a                      <---------GLK1(2) ---         --------->ANAC46                  <---------TGA1a                    <---------TOE2(3)   <-- -------MYB52(1)  ===================================MYC_MYB                  ----------->ARR10------ --->ZmHOX2a(1)   ------->GAMYB<---------ALFIN1<---------ZAT6        --------->ZAT2            <----- ----->TOE2(3)   <---------MYB52(2)      <---------ALFIN1            <---------ZAT2         ---------   cttagttttctccgaaacaactcacccacttccccacttgccctcacttgtgttacaagccctcgttactaagctcggctaagattcttcaaaacattaa  13008300                                                                                              <------    <-------GAMYB                                                                            <------ZmHOX2a(1)    <---------ANAC58                                                                 --------->YAB1    <---------ANAC58                                      --------->ATHB12           <---------ICU4   <---------MYB46(3)                                    <---------YAB1         ------------>CBF ------>ARR11(3)                                         <---------AHL20(2)     <---------ATHB12 -------ARR11(3)                                      <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxx --->AHL20(2)                                         --------->AHL20(2)--------->AtLEC2    --------- ----AHL20(2)         *TSS                     <-----------GT1        <---------AtLEC2  <-----------GT1 >TOE2(3)            <---------YAB1         <----------DOF2<------------CBF   --------->GLK1(1)   aatcttggttgcagtcccccatggtgataacatcgtatttctccaacttttactatttttttattgggttttccatggagaaatcaatagttacaggaca  13008400                             --------->ANAC58  --------->ANAC46           --------->ANAC46  --------->ANAC58           --------->ANAC58     --------->AtLEC2  --------->ANAC58       <----------DOF2<---------YAB1               <----------ID1  <---------HSFB2a(2) ---ZAT18        <---------ARR14(2)   <---------ICU4   ---------->DOF2               --------->HSFB2a(2) xxsmallRNA(le3) --------->ARR14(2)   --------->YAB1 --------------->AGL15      <---------ANAC58 >ANAC46     --------->HSFB2a(2)     --------->ICU4  <---------------AGL15      <---------ANAC58   cttcaaggcatacttcgagtatttgggcttcaaggaagaattatgagttttcatgctaaaaggagtagaaatcgacaaaattccgtttcagaacagtttt  13008500                                      ====================================HOX2a_HOX2a                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                     =====================================HOX2a_HOX2a                                    --------->ARR11(3)                                    <---------ARR11(3)                                <-----------GT1                              <----------DOF2                         --------->ANAC58                           <---------ARR11(3)                         --------->ANAC58                           --------->ARR11(3)                       ---------->DOF2      <-----------GT1      <---------At4g35610<---------TOE1(3) <---------AtLEC2        <------ZmHOX2a(1)  <---------ICU4    <-----------RAV1(2)  <---------TOE2(3) <---------ANAC46 <-----------HVH21  ----------->GT1   tgtgcctcagatgtttggcatccgtttaaggtctttacgatcttggcatggaggtatctcggtgtcataggaaagctagaagagtcaatatttacatcga  13008600                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                             >>>>>>>ZML2   --------->HSFB2a(2)     --                  ---------->DOF2                            <---------HSFB2a(2)                   --           --------->WOX13(1)                                --------->HSFC1(1)             <--------        --------->ANAC46                         <---------ZAT14           <---------HSFB2a(2)    ---        --------->ANAC58                 --------->ANAC58    <---------HSFC1(1)           <---------AHL20(2)        --------->ANAC58                 --------->ANAC58    --------->HSFB2a(2)         --------->AHL20(2)      ---------->DOF2   <---------RAP2.6(3)      --------->ZAT14<---------GLK1(2)--------->ICU4  <---   agtcgaatcaaagcaatccatgaagccgttcagaagttatggcacgaagagtgaagacatgttctagaatcgtggttttagaaatgatcaatttaaaatt  13008700                        <---------SPL7                       --------->bZIP60(1)    <------NtERF2      --------->TGA1a --------->At4g35610   <---------TGA1a                         <---------ALFIN1         ------>NtERF2 <------NtERF2         <---------bZIP60(2)              ------>NtERF2                  --------->DEAR3(1) ---------SPL7         <---------O2                     --------->ZAT18              ------>NtERF2 --------DREB2C(2)     --------->O2                     <---------ZAT18              <---------RAP2.6(3) --------At1g77200     <---------bZIP60(1)          --------->ANAC46                --------->DEAR3(1) --------RAP2.6(2)     <---------ANAC58             <---------DEAR3(1)              --------->ANAC46 ------->ETT(2)        <---------ANAC58        --------->AtMYB61                    --------->ATERF1(2) ------->ETT(1)      <---------TGA2(2)         --------->ZAT6  --------->AtMYB61    --------->RAP2.6(2) -YAB1              ----------->HVH21      --------->MYB46(3) --------->MYB46(3)    <---------ATERF1(2) ------>RAP2.6(3) ----------->RAV1(2)      <---------ETT(2)--------->MYB46(3) ------>ZmHOX2a(1)  ---- --------HVH21  ------->TEIL --------->ANAC46 --------->MYB46(3)     ------>ZmHOX2a(1)<------NtERF2   gtcggccgaagagacttgaaccctgacgtcccctcaagtattccatcgaccactacggcgcacaaccactccttcccttcctcttgccgccaacttcaac  13008800  Previous    Next  AGI:  At5g34833.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.7e-165 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 13002755    to: 13008322    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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