Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------HSFB2a(2)                                     --------->HSFB2a(2)             --------->MYB46(3) <------MYB46(1)         ------->GAMYB          <------MYB83      ----------->RAV1(1)      --------->MYB111(1)                                                <-- -------->ARR14(2)             --------->MYB46(2)                                            -------- ---------ARR14(2)             --------->MYB59                   <----------DOF2        --------->DAG2 -----ZmHOX2a(1)         ---------->DOF2--------->ARR11(3)  ------>ZmHOX2a(1)          <xxxxxxxxxxxxx   aggatgtgcaacagaaccatcaactagtaaagttaggttgtagaacttgtattccattactcctagccttttagctatagagagaggcataaggctaaca  12952300                                                                               <---------ATHB12                                                                              ------>MYB46(1)                                                                            --------->MYB46(3)          --------->YAB1                 ------>ZmHOX2a(1)              <------ZmHOX2a(2)         <---------ATHB12     <-----------HVH21                    <---------LBD16   <---------ANAC58 -------GLK1(2)           <---------AHL20(2)           <------NtERF2--------->LBD16  <---------ANAC58 ->MYB52(1)        ------>NtERF2        --------------------->WRI1<---------LBD16    <---------ANAC46 xxxxxxxxxxsmallRNA(se3) --------->AHL20(2)     <---------AtLEC2 ------->TEIL ------>MYB83     <-----   gatgctcccaaatcatagtggcacctattaaatgtcaatggtcctagggagcatggcagagtgaatgaaccgggatcaccaatcgtttcttggatgactt  12952400                                                                                   --------->ZAT18                                                             ----------->GT1       <---------ZAT18                                                       --------->HSFB2a(2)        <---------ANAC58                                                       <---------HSFB2a(2)        --------->ALFIN1                                              <---------AHL20(2)                  <---------ANAC58                                             <---------AHL20(1)            ---------->DOF2                                             --------->AHL20(2)           xxxxxxxxxxxxxxxx>smallRNA(s)                <---------ANAC58    <---------CCA1(2)  --------->HSFC1(1)--------->At4g35610        <---------At4g35610       <---------ICU4      <---------LBD16    <---------At4g35610        --------->HSFC1(2)        --------->YAB1      ----------------->AGL1    <---------ANAC46        <---------HSFC1(2)     --------->YAB1<---------AHL20(2)<---------ANAC46 --------->ALFIN1 ---- -----DOF2      <---------ANAC58 <---------ATHB12   <-----------GT1 <---------ARR14(2) <----------DOF2   tcttcttgtaagcttcttgagtgatgactctactaatcatctcttaattttttttttccagaatggtgagtattcagcaaaggtgtgtgctttatagtcc  12952500                    <-------TEIL                 <------MYB46(1)                 <------MYB83                --------->MYB111(1)                --------->MYB46(2)         <---------MYB46(3)                      <---------ANAC58      --------->ATHB12                        <----------DOF2 --------->AHL20(2)--------->ALFIN1          <---------DAG2                      <---------YAB1 ------->GT1   <--------P            ------->TEIL<---------ANAC58 ------>ZmHOX2a(1)   agataaattgatgggtagtaggtgcagcaatttgagttgaatctccccctttcttgaaccatattgtcctcaatattgggagtctgataacttgttggag  12952600                                                                  *TSS                                                    <-----------GT1     --------->ARR11(3)                                         <---------YAB1        <---------TOE2(3)                       <---------At4g35610--------->ZAT6       --------->MYB59    <----------DOF2                  <---------YAB1       --------->YAB1<<<<<<<<<GATA-1    <---------ARR11(3)            <---------MYB46(3) <-----------GT1    <---------AHL20(2)    <---------GLK1(2)   actcatcttcttgttggatgtttatagctgatatatccctattatcactgattttatctatgttttaggtataagattttgagtctttatgttatttctc  12952700                                                                                  --------->DAG2                                                                                 ---------->DOF2                                        ------------>CBF                       <------ZmHOX2a(1)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)           <---------TOE1(3)                             ------------>CBF  *TSS                          <---------TOE2(3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           ---------->DOF2   --------->At4g35610                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           XXXXXXXXXXXXXXXXXXXXX>MIR855                      xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------ZmHOX2a(1)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------At4g35610                  <---------TOE1(3)<----------ID1     <------ZmHOX2a(1)    <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------ZAT6   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxx   aagtgtttttagtgttttttcaggtattctatgcaatgggacaacaatggagattaggagacattttggagcaaaagctaaggaaaaggaagctaaggac  12952800                                          --------->LBD16                                          ------>ZmHOX2a(1)                            <----------DOF2                                    <---------ALFIN1                             ----------->TGA1                                  <---------ALFIN1       <-----------------AGL1  ----------->HVH21                                  --------->ANAC46       ----------------->AGL3xxxxxxxxxxxxxxxxxxxxxx                              ===================HOX2a_HOX2a                  <-------TEIL        ---                              <------ZmHOX2a(2)         ------>NtERF2       <xxxxxxxxxxxxxxxxsmallRNA(s)            --------->GLK1(1)--------->ARR14(2)        --------->ANAC46  ---------->DOF2          <--            <---------GLK1(1)<---------ARR14(2)     <---------ETT(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxx>smallRNA(i)    --------->ALFIN1----------->RAV1(2)           ----------->RAV1(1)        <---   gattttggattcagaaatcagagagagtgtcgatccacacactcctggtatcgatcgacaccatttttggcccaacaaagtccatgacgctttcaagttt  12952900                                                 --------->LBD16                                         <---------YAB1                  --------->LBD16      --------->ATHB12      <------ZmHOX2a(1)                <---------ICU4     ----------->GT1          ------>ZmHOX2a(1) <---------LBD16 >smallRNA(i2)  <---------LBD16        --------->ATHB51 ------>HSFB2a(2)<---------HSFB2a(2)   <--------HAHB4 -------HSFB2a(2)--------->HSFB2a(2)  --------->ICU4     <---------AHL20(2) --------------AGL1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2   acagaagaggaaatttttcccagaaaactttcctatttgcattattagtccctggacattttatatggtctttatattgtttttgcaaaaccctgttatt  12953000                                                                     <----------DOF2                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                              --------->GLK1(1)                                                              <---------GLK1(1)                                                             --------->ARR11(3)                                                             <---------ARR11(3)           <----------                                   <---------AHL20(2)       --------->GLK1(1)       xxxxxxxxxxxxxxxxx                      <---------MYB46(3)                    <---------GLK1(1)       --------->TOE2(3)                      ----------->GT1                  <---------ZAT14           <---------CCA1(2)                     <---------AtMYB61                 --------->ZAT14         <---------DAG2  <-----   gagagacagaagctattcatcgagtggtttcatagatttattcagttcttaatacagtgaagagatctcttctttccctccccttatcttatttgttgtg  12953100                                                                                      <-------TEIL                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                           --------------->AGL15                                                                           <---------------AGL15                             <-----------GT1                               <---------YAB1     <------                 --------->YAB1                                <------ZmHOX2a(1)    <---------ARR14(2)        <---------YAB1    <---------MYB46(3)                   =============================HOX2a_HOX2a    <----------DOF2       --------->MYB52(2)                   ==============================HOX2a_HOX2a <---------YAB1  <---------ICU4                  --------->ZAT18          <-----------------AGL2 -RAV1(1)       <---------ATHB12   --------->YAB1<---------ZAT14          <-----------------AGL1----- xxx>smallRNA(si3)      <---------ANAC46         --------->ZAT14       <---------GLK1(1)    --------- ----ANAC46   --------->WOX13(1)  <---------ATHB12         <---------MYB52(1)       --------->ARR14(2)   tttatgctttcttattcaatcatgttgtttgttacaatcaatatgtctgagtaaactgctcgttaggaatagggtttctcattagggatccatatggtta  12953200  Previous    Next  AGI:  At5g34644.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.1e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12951371    to: 12952666    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g34665.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.0e-62 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12952747    to: 12957459    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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