Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <xxxxxxxxxxxxx                                                                                       <-----------ARR10                                                                                      --------->At4g35610                                                                                      --------->ZAT2<                                                                                      <---------ZAT2-                                                                                      <---------At4g35610                                                                                      <------NtERF2<-                 --------->ARR11(3)                                                  <<<<<<<<<AtERF-3                 <---------ARR11(3)                                         xxxxxxxxxxxxxxxx>smallRNA(i)       <---------ANAC55(2)      <----------DOF2                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------TOE1(3)              --------------------->WRI1           <-------GAMYB   <<<<<<<<<AtERF-4 <---------TOE2(3)     ------>ZmHOX2a(1)   --------->YAB1      xxxxxxxxxxxxxxxx>smallRNA(i)    <----- ------DOF2      --------->ARR14(3)     --------->YAB1      ------->TEIL <---------AtLEC2    ------>ZmHOX2a(1)   ttgaaggttatgtaaacaagacctcctctctcttctttctaagaatcatcaacacaaaaatgaaccttgagggttgcaaggagttggcagctctcctctt  12647400                --------->ZAT2                <---------At4g35610                <------NtERF2                <---------ZAT2                                                                 ------               <<<<<<<<<AtERF-4                                                               -------               <<<<<<<<<AtERF-3                                                               <------      <---------ALFIN1                             <---------ANAC55(2)                       --------      ----------->RAV1(1)                          --------->ANAC55(2)         <---------ARR11(3)    <-----------------AGL1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------   --------->ANAC46                  >>>>>>>>>>WRKY43                         <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxsmallRNA(se3)    <-----------RAV1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         -------- ---------ARR14(2)      ------->TEIL >>>>>>>>>>WRKY38                        ------>MYB83    <------- -------->ARR14(2)   <---------YAB1  >>>>>>>>>>WRKY26       --------->ANAC46 ------>MYB46(1) <------- --------CCA1(2)--------->At4g35610  <-----------GT1        --------->bZIP60(2)--------->ARR11(3) <-- -----DOF2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <-------   tgtatcccccacattggcagctcatgaatgttgcaaaattgaccaattccatcaagtattccacatcaccacaaataccaagctcttgcatcgtttcctt  12647500       <---------MYB59 <---------------AtSPL8 >ZmHOX2a(1)                                                                                    ----- -------->AGL15                                                                               xxxxxxx ---------AGL15                                                                      <---------MYB52(1) --------->AGL1                                                                    <------MYB46(1) --------->AGL3                                              <---------MYB46(3)    <------MYB83xxxxxx --------->AG                              --------------->AtSPL8                  <---------DEAR3(2) ----------AGL3                          --------->YAB1      <------MYB46(1)       <---------MYB46(3) ----------AG                           <---------YAB1      <---------AtMYB61     <---------DEAR3(1) -------YAB1<---------ZAT18    ------>ZmHOX2a(1)      <---------LBD16            <---------ORA47(1) ----------AGL1            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<------MYB83 ------>ZmHOX2a(1) xxxxxxxxx   atgagggtacctagttccctcaaacttcaactccttcaaatattgatagtactcgctcgggattggttctctcttcctccttggtcggtttcttctccca  12647600      <------MYB83      <------MYB46(1)     <---------DEAR3(1)     <---------AtMYB61     --------->MYB55(2)     --------->MYB111(2)     --------->MYB46(2)     --------->MYB111(1)     <---------MYB46(3)   ------>ZmHOX2a(2)                                                       xxx    <---------MYB55(1)  <---------ARR11(3)                                                     ------    <--------P     --------->LBD16                                                            -------  <---------MYB46(3)    --------->ARR11(3)                                               <----------DOF2 ------>RAV1(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------At4g35610 xxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ARR14(2)                         --------->At4g35610 xxxxxxxxxxxxxx>smallRNA(i2)          <----------DOF2   ---------->DOF2          <<<<<<<<<TBF1<------   acaggggttggtgtatcatccccgatgatctcaacctcttctttagaaaccgcttcttcaaagggtgcctctccatggtgttcttcttcagcttcaacga  12647700                                         <---------ANAC46                                     <---------At4g35610                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <---------ZAT2           xxxxxxxxxxxxxxxx>smallRNA(i)--------->ZAT2          xxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC58       <---------ZAT2       --------->LBD16            --------->ETT(2)             ------>MYB46(1)                 <-----      <---------LBD16       <---------AtLEC2            --------->WRKY12              <---------ZAT2  <----------DOF2           <---------ANAC58  --------->At4g35610       <----------DOF2        ------ xxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  ------>ZmHOX2a(2)       ------ ->GAMYB--------->LBD16 <----------DOF2  <---------ANAC58      ------>MYB83           --------->ZAT2- -->MYB46(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  ------>ZmHOX2a(1)--------->ARR11(3)<---------ANAC58 xxxxxxxxxxxsmallRNA(si3)   <---------ANAC58  <---------At4g35610    <---------ARR11(3)<---------ANAC58 ---MYB52(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ==========================HOX2a_HOX2a xxxxxxxxxxx   ccctctttccccgagctacttcttctctttgcatggtcgagcggcttgagcttcctcgttgaaccaagcttgatctttgagcacgacgagcttggcgaat  12647800                                                        --------->ARR11(3)           --------->ANAC58                             --------->GLK1(2)           --------->AtLEC2                             <---------ARR14(2)           --------->ANAC58                             <---------ARR11(3)        --------->WRKY18(1)                             --------->ARR14(2) <---------ANAC46             --------->AtMYB61         <---------ARR14(3) <---------ANAC58          <---------ALFIN1             <-----------ARR10 <---------ANAC58       *TSS  --------->TOE2(3)         --------->ARR14(3) ----ARR14(2)        <-----------HVH21                 <------ZmHOX2a(1) --->GLK1(2)       ------->MYC3                    ------->GAMYB   --------->LBD16 --->ARR14(2)   <---------ALFIN1                ----------->RAV1(1)--------->ANAC46 --------->ID1----------->RAV1(1)          <---------YAB1 ------>ZmHOX2a(2)                        <- xxxxx>smallRNA(i) <-------MYC3            --------->ICU4<------ZmHOX2a(2)                  ---------   ttggcgttcagtcatgccacacatgtcaaacacctcaacttcttcatgatcaacagaggatcttcttgcccgagacgaactcttccttcttgaatccttg  12647900                    --------->AHL20(2)                    --------->YAB1               ------------>CBF              --------->ANAC58              --------->ANAC58 --------MYB46(3)--------->WOX13(1)                <--------P      <----------DOF2 >ATHB12    ---------->DOF2            ----------->GT1    --------->GLK1(2)   gtggtgagtttcaacaaagcaattaaaaacaactctccaagaggtatcaaggggtaagggaatcagtttctttgttgatgaaatttttgagtttgatacc  12648000                                                                   <---------GLK1(2)                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                              --------->MYB52(1)                                                           <---------------AtSPL3                                      <----------DOF2    <---------ANAC46                          ----------->HVH21             --------->ALFIN1            =========================HOX2a_HOX2a      <---------ANAC46         <---------ZAT6            <------ZmHOX2a(1)     <--------P<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ATHB12          <---------TOE2(3)     ----------->GT1       <---------REM1(1)  ---------->DOF2  ---------->DOF2------->TEIL ------>ZmHOX2a(2)    <---------AtMYB61  --------->TOE2(3)     <--------   gattgaaagcttgaggatgaacttcgaagtgatcgggtaactttggtgaagtattggtgtaggggaacggattcttaaagagtgatagggagcgatttta  12648100                             <----------DOF2                        ---------->DOF2                  <---------ARR11(3)                                                  ---------->ID1                  --------->ARR11(3)                                            <------MYB83                  <---------GLK1(2)                                             --------->HSFB2a(1)                  --------->ARR14(3)      ----------->GT1                       <---------HSFB2a(1)                  <---------ARR14(3)     <--------P                             <------MYB46(1)     -                  --------->ARR14(2)    <-------GAMYB       ---------->DOF2--------->ANAC46       <--                  <---------ARR14(2)   <---------MYB46(3) <---------YAB1   --------->ANAC58      <--- --DOF2         ----------->ARR10      --------->ALFIN1--------->ICU4      --------->ANAC58 <--------   ggggaagagtttggaatgaagattttcaaagctttgtgagggggttgcaaaaacgagatgatgaaagagagagtttcaaggaaggtttgtcgaaatcaat  12648200                           <---------HSFB2a(2)     <------ZmHOX2a(1)     --------->HSFB2a(2)    xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               ----------->GT1   <---------ANAC46     <----------DOF2      <---------AHL20(2)     <---------MYB46(3) -------->ALFIN1  <------MYB83            ----------->GT1    <---------ANAC46 -------ANAC46xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ALFIN1                       <- ------MYB46(3)   <------MYB46(1)        --------->DAG2   --------->ALFIN1                         -- -ATHB12      <---------MYB46(3)        ---------->DOF2  <-----------HVH21    <----------DOF2--------   gggtggaggagaatggtgtttggtttctttgggaagggatagaaaagttaattggaaacggtgagggggatgggtaatcgctttgtccattgagtaaaag  12648300  Previous    Next  AGI:  At5g33384.1    Description:  transposable element gene. pseudogene, hypothetical protein, temporary automated functional assignment Range:  from: 12646121    to: 12647824    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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