Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ANAC55(2)        <-------TEIL       <-----------GT1    ----------->GT1 <---------ANAC55(2) <---------ANAC58 <---------ANAC58 --------->ANAC55(2) <---------ANAC46                                      ----------->RAV1(1)                         -- ---------TOE2(3)                                    --------->DEAR3(2)                           <-- ----------GT1                          <---------ARR11(3)                                    ------>NtERF2 ----AHL20(2)             ---------->DOF2   <---------YAB1                                 <---------At4g35610 --->AHL20(2)   --------->REM1(1)--------->GLK1(2)  --------->PCF2                         --------->At4g35610 >TOE2(3)--------->ANAC55(2)----------->GT1 ------>ZmHOX2a(1)                       <---------AHL20(2)   tttacgtagttacatactacaactaaaaaaaagaaaatccaaaatcctaattggaacccacaaaaataggggcttcatacaattgttttatttggctgcc  12619300                  ----------->HVH21                 <-------MYC3                 <-------MYC2                 ------->MYC2                 ------->MYC3                 ------->PIF5                 <-------PIF5                --------->O2                <---------O2                <---------ANAC55(2)                --------->TGA1a                --------->ANAC46                --------->ANAC55(2)              <------------OsbHLH66              <---------ALFIN1       <---------ZAT2       <------NtERF2      <---------DEAR3(2)      ------>NtERF2      <---------ATERF1(1)      <---------RAP2.6(3)                                       -------->HAHB4     <---------DEAR3(1)                                         --------->YAB1     <---------ATERF1(2)                                       <---------YAB1     --------->ATERF1(2)                                      <---------TOE2(3)     --------->RAP2.6(2)                                    --------->AHL20(2)                 ------     <---------RAP2.6(2)                                    <---------AHL20(2)       <---------YAB1--    --------->ATERF1(1)                                 --------->AHL20(2)         --------->YAB1  <- ------->STY1(1)<---------TGA1a                         <---------AHL20(2)   ------->TEIL     <------ -------MYB52(1)--------->bZIP60(2)                   <---------MYB52(1)  <---------MYB52(2)  <------   cttagggccggctcgaccacgtgactgtttgaattcttgttttttttttgtcatccgtttaattaatgatactcaaacgaaccatttatgagaaatatta  12619400                                    <---------ANAC55(1)                                    <---------ANAC58                               --------->HSFB2a(1)                              ------->TEIL                        <---------SPL7                       <------MYB83 <---------ANAC55(2)                       <------MYB46(1)                      --------->MYB59 <---------ZAT6                      <---------AtMYB61                      <---------MYB46(3)                      <---------------AtSPL3                      --------->MYB111(1)          <---------MYB52(1)               --------->CCA1(2)    <---------ANAC58               --------->ARR14(1)   <---------ANAC46 --->AHL20(2) --------->ARR11(1)    --------->ANAC55(2) ------->AHL20(2)     --------->MYB46(2)      <---------ARR14(2)                        >>>>>>>>>>GT-3b --------AHL20(2)   <---------MYB52(1)----------->GT1                                ----------->GT1 ---AHL20(2)<---------YAB1 --------->ANAC58   --------->GLK1(2)                 --------->YAB1 ---YAB1  --------->CCA1(2)--------->ANAC58   --------->ARR14(2)  ---------->DOF2  ---------->DOF2   tttatataagtgatatgatacggtttggtacgaatgtttcgtgttaaaaatccgtttttatattcgcacaaagagaaactaaaaataaagaaaaataaga  12619500                                                          <------MYB46(1)                                                          <------MYB83                                                        <--------P                                                       <-------GAMYB                                              ------>NtERF2<---------HSFB2a(2)                                             --------->WRKY45                                             --------->WRKY12                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                             ----------->HVH21                   <-----------ARR10                                             --------->WRKY38(1)                 <---------ARR14(2)                               --------->CCA1(2)      <------MYB83      --------->YAB1                              <---------ARR14(2)      <---------MYB46(3)<---------ICU4 <xxxxxxxxxxxxx                              --------->ARR14(2)      <------MYB46(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT14                         ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->GLK1(2)                         <-----------HVH21 --------->At4g35610      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------GLK1(1)      <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                    --------->GLK1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ARR14(2)                    <------ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ------>MYB46(1)                   --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------>MYB83                   <---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ICU4<---------AGP1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ATHB12------>ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------YAB1 <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)    --------->ICU4 --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)  --------->YAB1  <---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   gaattcatcattgtcgatttagatctccttcagatatactaagaacgctgaccatttggttggagaagacacaatcttcaccaaatctgaacagtctgaa  12619600                                                                                             --------       <---------ARR11(3)                                                     --------->ARR14(2)       --------->ARR11(3)                                                --------->ALFIN1  <---------ANAC46      --------->REM1(1)                                               --------->DAG2       <-------GAMYB   --------->ANAC46                                       <---------ALFIN1    <---------ARR14(2) --------->ANAC46           --------->YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->MYB55(2) --------->ANAC58          <---------ATHB12      ---------->DOF2     ---------->DOF2      <---------MYB46(3) --------->ANAC58        --------->WOX13(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <-----------HVH21 xxxsmallRNA(s)       --------->TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->CCA1(2)   aaaacgcgacatcttggttatcaacttcaatcatacatctcatcgccaagagaaagccttccacttcggtataaagtggagataggcttcgtcgggtgtt  12619700                                                                                    <------------CBF                                                                         <---------AHL20(2)      *TSS------->TEIL<------------CBF   --------->ZAT6    ----------->GT1   --------->AHL20(2)     < ->ALFIN1<---------CCA1(2)   <---------ANAC46          <-----------GT1   --------->AHL20(2)     -----   tgtttgaatttgtatctatgtttatattgtttagtgaatgcttccactaaaaacatataactagttaatacaaatttaaataaaaagattgaacaaaaaa  12619800                                                             --------->ATHB12                                                             <---------AHL20(2)                                                             -------->ATHB1                    >>>>>>>>>ARR1                            --------->ATHB51             <-------TEIL                                    <---------ICU4           --------->KAN4(2)             <---------ZAT2      -------->HAHB4          <---------KAN4(1)     <-----------GT1    ----------->GT1      ----------->RAV1(1)       <---------ZAT18<---------MYB46(3) --------->ZAT2     <---------YAB1 --------->YAB1     >>>>>>>>>ARR2        <---------At4g35610--------->ICU4                       ---- ---------YAB1   <---------TOE1(2)       --------->At4g35610<---------ATHB12          ----------->RAV1(1) ---->AHL20(2)--------->YAB1 <---------ICU4<---------ZAT18  <---------ATHB51--------->ANAC46     ----   aaatgatagtgaacattcgtaagattgttgaatattacttctcagctcacaattggtgactaattattgatgaacaacacaaaactcacaacataactca  12619900                                --------->YAB1                               <---------AHL20(2)                              --------->AHL20(2)                            <---------AHL20(1)                           <---------ARR14(2)         ---------->DOF2 --------->AHL20(2)                              --------->ARR14(2)        --------->AHL20(2)  --------->AHL20(1)                     --------->DAG2        <---------AHL20(2) --------->AHL20(2)                     ---------->DOF2                <--- ----->ANAC58      ----------->GT1           ----------->GT1   --------->YAB1                    ---- ----->ANAC58 >>>>>>>>>>>>>>>>>LFY        ---------->DOF2  ---------->DOF2               <------ZmHOX2a(1)   aggaaactaattaaagtgccaatgtaaaaatatataataaacgagaaaggcaaaacaaaaacaaagcataaagtggatttgggatagatgaggaatagaa  12620000                          <------MYB83                          <------MYB46(1)              --------->MYB52(1)      --------->ATHB12                  --------->ARR14(2)    --------->WRKY18(1)  --------->ALFIN1       ------->TEIL            <---------ARR14(2)        <--   <-----------HVH21     <---------AtMYB61     <---------AtLEC2      <---------TOE2(3)            <-- --------->MYB59       <------ZmHOX2a(1)      <-------TEIL<------ZmHOX2a(1)          <---------YAB1 ------HSFC1(2)    --------->ALFIN1  <-------TEIL      <-----------RAV1(2) <---------MYB46(3)    <--- ----->HSFC1(2)  ------->GAMYB   <---------TOE2(3)     <---------LBD16 <------ZmHOX2a(1)         <---   gcttaggtcatggaatcaacggtgaggatggtgctaagattcatgggatgcatgtattcaggagagccattgaggatttgttgagctatgattctacttg  12620100                                       ------>ZmHOX2a(2)                                    --------->GLK1(1)                               ---------->DOF2                           --------->DAG2                     ------>ZmHOX2a(2)--------->GLK1(1)                    <-----------------AGL1                    <------ZmHOX2a(2) <------ZmHOX2a(2)                   <---------ARR11(3) <---------GLK1(1)         ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ZAT14      --------->ANAC46         <---------ANAC46---------->DOF2             --------->ICU4<---------ANAC58       --------->SPL7        <---------MYB46(3)---------->DOF2   <---------MYB52(1)     <---------ANAC46      <<<<<<<<<SPL1    <---------YAB1 <---------ARR14(2)--------->ARR11(3)--------->ARR11(1)                <<<<<<<<<SPL5 -------DAG2       --------->ARR14(2)<---------ARR11(3)<---------ARR11(3)                <<<<<<<<<SPL4 --------DOF2     ===========================HOX2a_HOX2a--------->CCA1(2)       --------->ARR14(2) ------ANAC58     <------ZmHOX2a(1) <---------GLK1(1)----------->ARR10--------->ZAT18   <---------SPL7 ------ANAC58     ============================HOX2a_HOX2a          <---------ANAC58  <---------------   ctttttctgatgggtgaaaaggatcccaaaaggcaaagagatctctgtttgggcaaagatttgataatggagtgcatagccctatcccattgtacggccc  12620200  Previous    Next  AGI:  At5g33365.1    Description:  transposable element gene. expressed protein, similar to reverse transcriptase, putative Range:  from: 12619377    to: 12619706    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g33370.1    Description:  GDSL-motif lipase/hydrolase family protein. similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylesterase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38768.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67726.1); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087) Range:  from: 12619698    to: 12621994    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version