Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ------>ZmHOX2a(2)                                                             --------->GLK1(1)                                                             <---------GLK1(1)                                                            --------->ARR11(3)                                                            <---------ARR11(3)                      -                                                            --------->ARR14(2)           <---------YAB1                                                            <---------ARR14(2)           --------->ICU4                                                            <---------AGP1       <------MYB46(1)    -               --------->CCA1(2)                           <---------CCA1(2) --------->ZAT2         -             <------ZmHOX2a(1)                       <---------MYB46(3)      <---------ZAT2<---------GLK1(2)            ----------->GT1          <---------MYB59 <------MYB83   <---------GLK1(2) --------->WRKY18(1)         ---------->DOF2          ===================================HOX2a_HOX2a <------MYB83     <--       <---------AHL20(2)         <------ZmHOX2a(1)  <------MYB46(1)<---------ICU4  <---------MYB46(3)   cgagtatatataaaaggatatatgactcaagttttaggaccgaattttgtatagttggtttggatctccataatctcagagcttggtggtcaagattgtg  12605700                                                         <---------ZAT18                                                         --------->SPL7                    <---------CCA1(2)                                                     --------------->AtSPL8          ------->TEIL                                                     --------->MYB59              --------->WRKY12                                                     --------------->AtSPL3       --------->WRKY38(1)                                                  <---------ARR14(2)            <-------GAMYB          <---------MYB52(1)                      --------->ARR14(2)           <---------ANAC58   --------->ARR14(2)                        <---------ANAC58                  <---------ANAC58   <---------ARR14(2)                        <---------ANAC58                  <---------ANAC46 -------->bZIP60(2)                          <---------ANAC46                 --------->ZAT18  ------ -------->ANAC58                             ----------->GT1         --------->At4g35610 <----------DOF2 -------->ANAC58                           --------->ARR11(3)        <---------At4g35610 <---------DAG2 -------ANAC46                             <---------ARR11(3)     <---------MYB52(1)<-----------GT1   cctcgtaacctcgttatccaaaaatgaagtagaatgtgagtcgaatatcgtgaattcggtaccctctcgttagctcatagtgcgttgaaccctttatctc  12605800                                      --------->DAG2                                     ---------->DOF2                                           <-----                            ----------->GT1                                                    ------                          <---------ANAC58                                             --------->LBD16                          <---------ANAC58                 <-----------HVH21          --------->LBD16                          <---------ANAC46     --------->ANAC58                       --------->ANAC46 --->HSFB2a(2)            ----------->GT1      --------->ANAC58                   <---------GLK1(1) <   gaatttgtcaaaacaaattgatattttgtcgtgaaaaaaaaaagttcagacgaaaaatagtggtcacaagtcttgttcgaattgatacccgaaaaaacat  12605900           ----------->GT1         ---------->DOF2     ------>MYB46(1)                            ---------->DOF2                           -----------     ------>MYB83                            --------->TOE1(3)     <----------DOF2       <---------TOE1(3)   ------->GAMYB                             --------->TOE2(3)  ------>NtERF2       <---------YAB1  --------->MYB46(3)               --------->AHL20(2)           <------NtERF2<---------TOE1(2) ----ARR11(3)        <---------AHL20(2)   <-----------GT1    <---------------------WRI1  <---------TOE2(3) --->ARR11(3)       --------->AHL20(2) <---------ICU4      --------->DAG2    <---------TOE2(2) -----------GT1 --------->ICU4     <---------AHL20(2)    ---------->DOF2     <---------TOE2(3)    ---   cttaaccaacttaaagtaaaaatttaaaatcggaaatttaaatattaccctaaagttttaaaaggcggacttttcaacgaaggtttatgctaaggttaaa  12606000                                                                                                   <-                                                                                                  ---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              -------                                                      --------->ANAC58                        <------                                                      --------->ANAC58                        -------                                                     ------>NtERF2                            <------                                                    <---------ALFIN1                          <------                                                   <------NtERF2   <------------CBF           -------                                                   --------->ATERF1(1)                        <------                                       <---------AHL20(1)         <---------GLK1(2)           <------                                      --------->AHL20(2)   <<<<<<<<<CBP60g                   --------             <----------DOF2       --------->YAB1--------->ANAC46 <---------ICU4        <----------DOF2       <---------ARR14(2)         <---------ATHB12<---------ATERF1(1)  <---------ANAC58<---------ANAC58       --------->ARR14(2)         --------->AHL20(2)--------->DEAR3(1) <---------ANAC58<---------ANAC58 >GT1  <---------GLK1(2)      ------------>CBF   --------->RAP2.6(2)*TSS          <---------ARR14(2)- ------>AHL20(2)      --------->GLK1(1)--------->AHL20(1)  <<<<<<<<<SARD1         --------->ARR14(2)-   aaaaatacagaaacgctttctcacatttccatttcaataaatatatatcagtcgccacccaaatttcagaattgcttctcttagtatttgctttcaccaa  12606100    --------->MYB52(1)   ----------->HVH21 --------->ANAC46 --------ALFIN1 ---->GAMYB ---->ANAC58 --->P ---->ANAC46                                                       --------->ARR11(3) ->MYB83 <---------GLK1(2)                                         <---------AGP1 ->MYB46(1)                                                        <---------ARR11(3) ---->ANAC58                                              <---------YAB1          <-----------ARR10 --->MYB55(1)                                        ------>MYB83  --------->ARR14(2) -->DEAR3(1)                                       --------->AtMYB61--------->GLK1(1)        <------- ---MYB46(2)                                       <---------MYB111(2)          ---------->DOF2 <---- -->AtMYB61                                        <---------ALFIN1<-----------ARR10         <------- ---MYB111(2)                                      <---------MYB111(1)       --------->AtLEC2-------- ---MYB55(2)                                       --------->MYB46(3)------>ZmHOX2a(2)    <---------ANAC46 -->MYB46(3)                                    --------->AtMYB61  --------->AGP1 ----------->ARR10 ---ALFIN1<---------ATERF1(1)                --------->ANAC46      <---------ARR14(2)   --------->LBD16 ---MYB111(1)                ------>ZmHOX2a(1) --------->MYB46(3) <---------CCA1(2)     ------>NtERF2 ->MYB46(3)               ------>ZmHOX2a(1)  --------->ANAC58   --------->HSFB2a(2)    <---------ALFIN1 ----->MYB46(1)   --------->ANAC58           --------->ANAC58   <---------HSFB2a(2)    --------->DEAR3(1) ----->MYB83      --------->ANAC58   <---------ALFIN1------>MYB46(1)<------ZmHOX2a(2) <---------LBD16   cccactcgacggagtctccaacgccttcctcctcattctccactctcacaccaccaacttctgattccagatctcaacgatgcaaagctccgccgtattc  12606200                                                                     <---------At4g35610                                   <------NtERF2                   --------->RAP2.3(1)                                   --------->At4g35610            --------->ABI4(1)                                   <---------At4g35610           --------->ANAC46                                  ------>NtERF2   --------->MYB46(3) ------>NtERF2                                  <---------DEAR3(2)             ------->GAMYB                                 <---------DEAR3(1)--------->AtMYB61--------->DEAR3(1)                                 <---------RAP2.3(3) ------>MYB46(1)--------->RAP2.3(2)                                --------->RAP2.6(3)<---------ALFIN1--------->DEAR4(2)                               <-----------HVH21--------->DEAR3(1)------>NtERF2                              --------->bZIP60(2)------>NtERF2   --------->AtMYB61                              ========================================MYC_MYB                              ========================================MYC_MYB                              --------->TGA1a --------->LBD16    <---------ALFIN1                              <---------TGA1a ------>NtERF2   ------->GAMYB ---------->DOF2         <---------MYB52(1)   --------->ANAC46<---------ATERF1(1)--------->DREB2C(2)        <-----------HVH21     <---------O2   --------->ANAC46 --------->AtMYB61       --------->ANAC46 ================bZIP_DOF<---------ALFIN1--------->MYB46(3) --ARR14(2)             ---------->DOF2      --------->ANAC58 <---------ALFIN1--------->ANAC46 -------GT1           ------>ZmHOX2a(1)      --------->ANAC58--------->MYB46(3) --GLK1(2)       ------>ZmHOX2a(1)<---------RAP2.3(1)------>MYB83--------->DEAR3(1) ->ARR14(2)<---------DEAR3(2) --------->O2  <---------LBD16  <---------MYB55(2)    <------ZmHOX2a(2)   tccctctctccgtcgcttcctctcctaaaaccacgtcggctctctctccgccaccatcccataaccaccgccgcttcttcaagcgatctaaacgtttctc  12606300                                                                               --------->ALFIN1                                                                              <---------MYB52(1)                                                                             --------->LBD16                                                                           <---------LBD16                                                                           --------->SPL7                                        --------->ATERF1(1)              <-----------HVH21                                        <------NtERF2                   <------MYB46(1)                                      <---------ANAC46               <---------ANAC58                                      <---------ANAC58               <---------ANAC58                                 ------>ZmHOX2a(2)                  <---------ZAT2                               <---------ARR14(2)                   --------->ZAT2                               --------->ARR11(3)                 --------->LBD16             ------>ZmHOX2a(2)                               <---------ARR11(3)                <---------ANAC58             =======                   <----------DOF2    <---------ANAC58           <---------ANAC58            <------ZmHOX2a(2) <-----------RAV1(1)           --------->ARR14(2)     <---------GLK1(2) <------MYB83         ========   caaatgttgtctctattccttctttatctcgtcgatcttggcgtctcgcttcgtctgattcgcctctccgtgcttggtccggtgttccttctccgatctc  12606400                                     <---------ZAT14                                     <---------ZAT18                                     --------->ZAT14                               ------>NtERF2                               <---------At4g35610                              --------->RAP2.6(2)                              --------->RAP2.3(2)                              --------->RRTF1(3)                              --------->DEAR3(1)                          --------->MYB46(3)                     --------->HSFB2a(2)                  <------ZmHOX2a(1)              ------->TEIL--------->DEAR3(2)            <---------TOE2(3)                   ---------           --------->ANAC58  --------->RAP2.3(1)    --------->At4g35610               <---------TOE2(2)           --------->ANAC58------->GAMYB           --------->ALFIN1                   <---------TOE2(3)           --------->ANAC46--------->DEAR3(1)  ---------->DOF2            --------->At5g28300          xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ARR14(2)  <------MYB83----------->GT1    <--------    ------>ZmHOX2a(1)<---------HSFB2a(2) --------->ARR14(2)  <------MYB46(1)          <---------TOE1(2) ==========HOX2a_HOX2a  --------->ARR14(2)   --------->LBD16 ----------->GT1      <---------TOE2(3) ==========HOX2a_HOX2a  <---------ARR14(2)   ------>ZmHOX2a(1)     <<<<<<<<<<<<<<<<<LFY--------->HSFB2a(1)   tcactccttagacacgaatcgtttcagaaccgccgctactgcagttcctgaaagtgctgaggaaggtgataacagtggtaaattgacgaaggttttggaa  12606500                                 <-----------ARR10                                 --------->ARR11(3)                        <---------DAG2          <---------ZAT18        <---------ARR11(3)                                           -------          --------->ZAT18<----------DOF2                                      <---------REM1(2)<-----  <---------ANAC58<---------------AtSPL8                               <---------ANAC58       <------  <---------ANAC46--------------->AtSPL3                               <---------ANAC58       -------  <---------ANAC58--------------->AtSPL8                  --------------->AtSPL8            --------- >HSFB2a(2)       <---------------AtSPL3     <---------ARR11(3)    <----------DOF2       --------->ZAT14 -HSFB2a(2)   <----------DOF2    --------->ARR14(2)       <---------------AtSPL8         <---------ZAT18   cttggcttgttgttcgctatgtggtaccttttcaatatctacttcaacatctacaataaacaggtactcctttgcttctctacatgcttagtctactcca  12606600  Previous    Next  AGI:  At5g33320.1    Description:  CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter. similar to triose phosphate/phosphate translocator, putative [Arabidopsis thaliana] (TAIR:AT3G01550.1); similar to plastid phosphoenolpyruvate/phosphate translocator [Brassica napus] (GB:ABK78670.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853); contains InterPro domain Tpt phosphate/phosphoenolpyruvate translocator; (InterPro:IPR004696) Range:  from: 12606068    to: 12608978    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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