Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->MYB52(2)                                                                                         <---------ANAC58                                                                                     <---------MYB46(3)                                                                               ---------->DOF2                                                                             ------>ZmHOX2a(2)                                                                             ========================                             <---------ARR11(3)                             --------->CCA1(2)                     --------->DAG2                                         <------ZmHOX2a(2)                    ---------->DOF2                                         =========================             ------------------------>ANAC81                               --------->ARR14(2)             --------->ARR14(2)                        --------->ARR11(3)  <---------ARR11(3)             <---------ARR14(2)                        --------->GLK1(2)   --------->AGP1<---------ANAC58             --------->GLK1(2)                         <---------ARR11(3)  <---------ARR14(2)            <---------GLK1(1)--------->ARR11(3)       --------->RVE1(1)    --------->ARR11(3)        ----------->GT1   <------ZmHOX2a(1)   ----------->GT1             <---------GLK1(1)       <-- ---------->DOF2 --------->LBD16    ---------->DOF2 --------->AHL20(2)    --------->GLK1(1) <--------   ctaaaaagaatagaaaatccgaaaaagaggagataatccaaagaaaaattgaaaaaaaatctaaaatcaattttggagatctaaagtttgttcgtggtta  12575100                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                   <---------AHL20(2)                --------->MYB46(3)                                                   --------->AHL20(2)        <------ZmHOX2a(1)                                                   --------->AHL20(1)      <---------TOE2(3)  <------         <---------TOE2(3)                        <---------AHL20(2)       <---------TOE1(3)  -------         <---------TOE1(3)                  <---------ANAC55(2)      <---------AHL20(2)    ------>MYB83        <-----------GT1                     ----------->GT1          --------->AHL20(2)    ------>MYB46(1)  --------->GLK1(2)                         --------->ANAC55(2)   --------->TOE2(3)  <---------ATHB12 ====HOX2a_HOX2a          --------->At4g35610     --------->AHL20(2)--------->AHL20(2)--------->YAB1 ====HOX2a_HOX2a    <---------AHL20(2)   --------->ARR14(2)      --------->YAB1--------->GLK1(1)  --- ----ZmHOX2a(1)     <---------YAB1       <---------ARR14(2)     <---------TOE2(3)  --------->WOX13(1) -MYB46(3)          --------->AHL20(2)   --------->GLK1(2)      <---------YAB1 <---------GLK1(1)-----   ggagaatttttaacgatgtgttttaattagcttagtaaacgagaattcgtaattaaattaaaaattaacataaaattaaggatttcaatcaccaaattaa  12575200                                                                                                    -                                                                                                    -                        <------MYB46(1)                                                             -                        <------MYB83                                                               --                  <---------YAB1                                                                   --                --------->YAB1                                                                     <-               <---------YAB1                                                                     ---          --------->YAB1----------->GT1                                                        ------          --------->AHL20(2)                                                                  <------         <---------ATHB12                                                     --------->ARR11(3) ---- ---AHL20(2)   ----------->GT1                            ------->GAMYB       <---------AHL20(1) <--- -->AHL20(2) <---------ICU4                               --------->TOE2(3)   --------->AHL20(1) ---- -------->GT1--------->YAB1    <---------AHL20(2)      <-----------GT1       --------->AHL20(2)<----- ----->DOF2<---------AHL20(2)  --------->AHL20(2) --------->AHL20(2)   ----------->GT1    --------->AtLEC2   aagttaaaccaataaaaatgataatttggtgatttaaatactatatttcccaaaaaataaccccaatactagttagaaaatatatagcagtgatgcaaac  12575300        ---------->DOF2   <---------ANAC46 -------->ANAC58 -------->ANAC46 -------->ANAC58 ------->SPL7                             >>>>>>>>>RAP2.2 ----->TEIL                             <---------ARR11(3) ------TEIL                             --------->ARR11(3) ------>MYB52(1)                       --------->CCA1(1)                                        ----- --------->AtSPL3                  <---------AHL20(2)               <----------ID1              ----- ------------SPL14                 --------->AHL20(2)             ---------->DOF2          --------->ANAC46 ----->TOE1(2)                    --------->YAB1           --------->ALFIN1                --------->ANAC58 ------SPL7  <----------DOF2 ----------->GT1              <-------MYC3   --------->DAG2    --------->ANAC58 ----->TOE2(2)           --------->AHL20(1)            <---------DOF5.7(2)             <---------AHL20(2) ----------AtSPL3       --------->YAB1 --------->RVE1(1)  ------->MYC3  ---------->DOF2--------->AHL20(2)   gtacggcatgtaaagctttctactaaaaataatgtataaaaatatctaaattttagtaaacgtgtcgaaaaagaaaaagggttctcaaattaaacgcatt  12575400                                                                                  <----------ID1           ----------->TBP                                                    -------->HAHB4           <---------YAB1                                                     --------->YAB1        -        <---------YAB1                                                     --------->YAB1      <-----     <---------TOE2(3)                        --------->AHL20(2)         --------->AHL20(1)    <-----     <---------TOE1(3)                  ----------->GT1                  --------->AHL20(2) <--------     <---------YAB1                 --------->ANAC46                    --------->YAB1*TSS  <-------- ---->ATHB12                        --------->ANAC58         <----------DOF2 <---------YAB1 <-------- ---->ATHB51    <-------TEIL        --------->ANAC58<----------ID1    --------->AHL20(2)    <--------   atttgttaagattataaatgcatactataaacgaatacaaggaagaaaaaaaatacaacaagtctttgacaaaaaaataataatacaacaagttgcttgg  12575500                                  <---------YAB1                            -------->HAHB4                           --------->ICU4                           ----------------------->TaNAC69(2) -------->AtLEC2           <---------ATHB12                 --------->YAB1 -MYB46(1)                 <---------YAB1                <----------DOF2 -MYB83                  --------->YAB1               --------->ARR11(3)                  <---------HSFB2a(2) -ANAC46          ====================HOX2a_HOX2a     --------->GLK1(2)             <---------ALFIN1 -ANAC58          ------>ZmHOX2a(1)--------->YAB1     <---------ARR11(3)       <-----------GT1 <----- -ANAC58      <-----------GT1  ------>ZmHOX2a(2)     <---------GLK1(2)    <----------DOF2 --------->HSFB2a(2) -AtLEC2   <---------CCA1(2)--------->ATHB12     ---------->DOF2  <----------DOF2  ------>ZmHOX2a(1)   tgatgcaaaactcatttctcctcccactaatgatcgatgatagagacataacaaagaatctttcatgacttttcttctttttctcctcacttccaaaaat  12575600                                                  ----------->GT1               <------ZmHOX2a(2)                                                  --------->ANAC58     <---------ZAT2                                                  --------->ANAC58     <---------At4g35610                                        --------->ANAC58               --------->At4g35610                                        --------->ANAC58              <---------ATERF1(1)                                 ---------->DOF2 --------->DAG2      <---------RAP2.3(3)        <----      ---------->ID1           <---------YAB1   ---------->DOF2 <---------ICU4 --------->ARR11(3) ----GLK1(2)------>ZmHOX2a(1)--------->YAB1---------->DOF2--------->YAB1       <---------ARR11(3)   tctctcttgtcttcctcttaagatgaaagaatcataaaaggaacccaaagaaaagcaaaaacataaccatggctgctccaagatcaagaagatgctctct  12575700                                                 <----------DOF2                                    <-----------GT1  ---------->ID1<---------At4g35610      <-----------GT1           <---------YAB1 <---------DAG2      --------->At4g35610 ------DOF2<----------DOF2   <---------YAB1 <-----------GT1--------->ANAC46        ------>ZmHOX2a(1)   ttctctcttaactcttttctccatcactcttattcttatttctgtttcactctttgtctccacaaaaccagctaataagcctttcctcgattacagaaac  12575800                                                  --------->ZAT6                  <---------ZAT18                                               ------->GAMYB                      <-----------------AGL1                                              <---------MYB52(2)                 ---------->ID1                                         --------->ANAC46                    <----------DOF2       --                             ------>ZmHOX2a(1)--------->MYB46(3)          ------>ZmHOX2a(1)<---------   cagttttctatttccatctctatctcttctcctcttgaacaaaacacaacaaacactagttttgtctcagcctctcctcctttgtcccctcttggtcaga  12575900                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                            ---------               <---------YAB1      <<<<<<<<<TBF1                                            <--------       ------->GAMYB <---------ANAC58                                                 ----------->GT1      <---------MYB52(2)        <<<<<<<<<TBF1           --------->AtMYB61             --------->ANAC58      --------->MYB46(3)     <<<<<<<<<TBF1 <---------DAG2                             --------->ANAC46 --------->RAV1(1)   <---------ANAC58      <----------DOF2                            --------->ANAC58 --HVH21  --------->ZAT6  <<<<<<<<<TBF1  ------>ZmHOX2a(1)                        ------>ZmHOX2a(1)   gcaacacaacaaacactattcttgcttcttcttcttcttcttcctctttttctgatcaccaaaaccaaaataagtctccaagtcctacaagtaaaaaaat  12576000  Previous    Next  AGI:  At5g33290.1    Description:  XGD1 (XYLOGALACTURONAN DEFICIENT 1); catalytic. similar to catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G42180.1); similar to exostosin family protein [Capsella rubella] (GB:ABA18105.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) Range:  from: 12575486    to: 12579250    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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