Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                          --------->ANAC46                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <---------ALFIN1         <---------ZAT14                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <---------ALFIN1           <---------ZAT18                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ZAT14                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             --------->ARR14(2)           ------->GAMYB      <-------     <---------------AtSPL3          ----------->HVH21--------->AtMYB61----------->RAV1(1)   -------- ------->ZAT14                 <-----------HVH21--------->ANAC46  <---------ANAC46           -------- --------ZAT14          <---------ANAC58     <---------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(i)  <------- --------ZAT18          <---------ANAC58     <---------ZAT14 <xxxxxxxxxxxxxxxxsmallRNA(i)   <-------- ------ZAT14<-------GAMYB ------>ZmHOX2a(1)  --------->ZAT14<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC46   gtgcagtcgagtacggttgtctcatttcctgtctgtcactcgaccggtatactcgaccacacccagtgtctggcaacagtctgtgcagtcgagtatatct  12414900                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         --------->At4g35610                                         <---------At4g35610                                  =========================RAV        =====================HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ------>ZmHOX2a(1)         <---------At4g35610    --------->ARR14(2)            ----------->RAV1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------ARR14(2)        <---------------AGL15   <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ARR11(3)       <-----------------AGL3 <---------AtMYB61   <---------CCA1(2)         <-----------------AGL2<xxxxxxxxxxxxxxxxsmallRNA(s) --ARR11(3)           ===============HOX2a_HOX2a<-------GAMYB ->ARR14(2)           <------ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->ARR11(3)          <-----------HVH21xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          xx --ARR14(2)   <---------MYB52(1)--------->REM1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxx -CCA1(2)    <-----------HVH21------>ZmHOX2a(1)<-----------RAV1(1)           <---------MYB52(1) <----   gtttcatatcctgcctgttactcgatcacatcctacatctggcatcagcctgttgtggtcgagtgattttagtaattctgttattgtttctgttttctgc  12415000                                                                                                   --                                                                                                  <xx                                                                                                  <xx                                                                                                  <--                                                                                               <xxxxx                                                                                             <xxxxxxx                                                                                           <xxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                    xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxx                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxx                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ANAC58                                               xxxxxxxxxxxxxxxx>smallRNA(i)             --------->ANAC58                                               <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxx                                              <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------ALFIN1x                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxx                                              <---------WRKY18(1)                  <xxxxxxxxxxxxxxxxx                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxx                                             xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxxxxxx                                             xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------AtLEC2 <xx                                            xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <---------ANAC58              <---------At4g35610<xxxxxxxx                                           <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------GLK1(1)    xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <-------GAMYB              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s) <xx         <------ZmHOX2a(1)            <---------ANAC46              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxx xxxxxxxxxxxxxx>smallRNA(i)           <---------AtLEC2         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xx xxxxxxxxxxxx>smallRNA(i)             <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<x -----AtLEC2<---------ZAT6           --------->ATHB12      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxx   atgttcacttaggactgttagaaaccccaatacttatattgcttggcttgacttagtgacttctgatcacatctcatctgtttgcatcacacccatttgg  12415100    --------->ANAC58    --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->HVH21 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------WOX13(1) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxsmallRNA(se3)                                                 <-------GAMYB xxxxxxxxxx>smallRNA(se3)                                                --------->RAP2.3(1) xxxxxxxxxsmallRNA(si3)                                                  --------->ATERF1(1) xxxxxxxxxxxxsmallRNA(fl3)                                               <------NtERF2    <-------GAMYB xxxxxxxxxxxsmallRNA(fl3)                                               xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxsmallRNA(fl3)          <---------TOE2(3)               <---------YAB1            <---------ANAC58 xxxxxsmallRNA(le3)      --------->ATHB12                    <-----------GT1<---------MYB52(1) xsmallRNA(le3)         <---------YAB1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxsmallRNA(le3)        --------->ICU4                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxsmallRNA(si3) ------->GAMYB                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------WOX13(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(i2)  <---------TOE1(3)       --------->ARR11(3)------>NtERF2   <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->ATHB12  --------->YAB1--------->DEAR3(1)<-------- xxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------YAB1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xx xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->YAB1 --------->GLK1(2)<---------DEAR3(1) <---------MYB52(1) xxxxxxxxxxxxxxxxxxsmallRNA(s2)      <---------TOE2(3)<---------ARR11(3)<---------RAP2.3(1) ---------   attgacacctaaaatactacaacgacatgattagggttttaggataattgactaaaaatctattatcaatttggcgccgttgccaattgggcgtttgttt  12415200                                --------->ARR11(3)                                <---------ARR11(3)                        <---------TOE2(3)                        <---------TOE1(3)                <---------GLK1(2)                                                              <-----       <---------TOE2(3)<---------YAB1                         <----------DOF2                <------ -MYB46(3)--------->GLK1(1)  --------->DAG2             <-----------GT1                    xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------HSFB2a(2)              xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <----------DOF2 ---------->DOF2            <---------MYB52(1) >MYB52(2)<---------GLK1(1) ---------->DOF2      --------->HSFB2a(2)     <-----------GT1 <---------YAB1   gctatatttgagatttcagaatatttaagataaagttctttttcattttttctgaaagttactaactttgtgttttttctgtttgtctgttttgattcag  12415300                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <------MYB46(1)                        <---------MYB46(3)            --------->ANAC58                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->GLK1(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------ARR14(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58         --------->YAB1             --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->TOE2(3)    -        <-----------GT1<--------P               --------->At5g28300    ------>ZmHOX2a(1)            -       --------->MYB46(3)<------MYB83    *TSS   <-----------HVH21<-----------ARR10                  < ----------AtSPL8--------->REM1(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)----------->RAV1(2)            - -----RAV1(2)--------->ZAT2   <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ARR14(2)               <xx xxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------GLK1(2)    --------->TOE2(3) xxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      --------->YAB1<---------WRKY12      <---   gtactacgaatcaccagcttcaccagttggtactcgttgtatgcaaacacggtcacaagaaaatcagaatctcctgttcaacgataacataaaccgtatt  12415400                                                                  ------>MYB46(1)                  --                                                                  ------>MYB83               --------                                                                <---------MYB59              <-------                                                                --------->AtMYB61            --------                                                                ------->GAMYB  <-----------RAV1(2)<xx                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--            <---------ZAT14                                    --------->MYB46(3)            --------    ------>NtERF2                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--   --------->DEAR3(1)                                         --------->ANAC58--------->ZAT14--------  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        --------->ANAC58<-------TEIL   -------- -------->ANAC46                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ALFIN1 -------->ANAC58                            <---------REM1(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->At4g35610 --- -------->ANAC58                          <-------GAMYB  ------->PIF5   --------->TOE2(2) <xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)======================RAV   ---- ------ZAT18--------->ZAT14         --------->At4g35610  <-------PIF5----------->RAV1(1) ------->TEIL   gcacgccaactcagaacacagacaaaaacagacacaatagctgcagttgtagatgagcaagtgcaaccaaacaacataggtgcagacgatgcaccacgca  12415500        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->TOE2(3) ->ANAC55(1) --ANAC55(2)                                                                                      <-- ->ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 ---- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                ---- ------->YAB1                     --------->ZAT14                                                ---- ->AtLEC2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             --------- ----->GAMYB                ----------->RAV1(1)                                       ----------->RAV1(1) ->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------YAB1     <----------ID1 ->ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <------ZmHOX2a(2)        <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ZAT14    --------->AGP1           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>MYB46(3)  <------NtERF2   --------->REM1(2)  --------->ARR11(3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxsmallRNA(le3) ------>NtERF2              <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->P--------->At4g35610 <---------ALFIN1         --------->At4g35610xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   accacaatcagcgtaatggcatcgtgcctccaccagtgtagaataacaaatttcagatcaagagtggtctcattgccatggttcagagcaacaagttcca  12415600                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           ----------->RAV1(2)                           --------->At4g35610                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                        <------ZmHOX2a(2)                       <-----------HVH21                 <---------ALFIN1                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->MYB59                ------>ZmHOX2a(2)                                           --------->MYB46(2)              --------->ARR11(3)                                            --------->MYB52(2)              <---------ARR11(3)                                            --------->MYB59   ------>MYB83<------ZmHOX2a(2)                                 ========================HOX2a_HOX2a   ------>MYB46(1) --------->ANAC46                             <---------ARR11(3) --------->AtMYB61<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ARR11(3) -------ALFIN1<---------ARR14(2)                               <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxx ----->ANAC58 --------->ARR14(2)                            ---------->DOF2 --------->MYB111(1) ----->ANAC46 <-----------ARR10                           >>>>>>>>>MYB98 ------------>MYB.PH3(2) ----->ANAC58<------ZmHOX2a(1)         <---------YAB1    --------->MYB52(1) --------->MYB111(2) >ARR14(2)   ==================HOX2a_HOX2a        --------->ZAT14<------ZmHOX2a(2)<------ZmHOX2a(1)<-   cgacctccctatggaggatccactcgatcacctggacgagtttgataggctctacagcctaacaaagatcaatggagttagttaggatggcttcaagctc  12415700                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                             --------->ICU4                                                                        <---------HSFB2a(2)                                                                        --------->HSFB2a(2)                                                 <---------DAG2         ------>ZmHOX2a(1)    <-----------GT1             <---------ATHB12 <----------DOF2        --------->LBD16---------->DOF2 xxxxxxx>smallRNA(i)    ---------->DOF2   --------->DAG2              ----------->RAV1(2) --------GLK1(2)    <----------ID1       ---------->DOF2       <-----------HVH21     --------->ANAC46   agattgtttccattctctcttggagacaaagcccatcagtgagaaaagtcgctttctcaaggctctatcacctcctggaatgactacaagaaagccttct  12415800  Previous    Next  AGI:  At5g33025.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.0e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12415341    to: 12418022    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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