Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------At4g35610                                           --------->ANAC46                   --------->At4g35610                           ------>ZmHOX2a(1)    --------->At4g35610        --------->At4g35610   ----     <---------GLK1(2)    --------->TOE2(3)--------->REM1(1)   --------->At4g35610              ----- ----ZAT2        <----------DOF2  <---------ALFIN1 --------->At4g35610     <---------At4g35610  <----   ttcgctagaaactcatcttctttcttatcctcagcctcaccctctacatcatcagccaactcatcatctaaacattcagcagctctatacaactctaaaa  12377400                                              --------->AHL20(2)                                              <---------ICU4           <---------ATHB12                  <---------ATHB51           --------->ICU4                    <---------AHL20(2)       <---------ZAT14                       --------->AHL20(2)    ------>MYB46(1)       --------->ZAT14                       --------->ICU4        ------>MYB83       <---------ZAT18                  --------->LBD16    <---------YAB1            --------->ANAC58   --------->ATHB12          --------->At4g35610         --------->YAB1        <---------ANAC58   <---------ICU4            <---------At4g35610 <-----------GT1  --------->WOX13(1) --------->ANAC58 ----->RVE1(1)        --------->ZAT14  --------->LBD16  <---------ATHB12       <---------ANAC46 ---->ARR11(3)        <---------ZAT14 <---------LBD16   --------->ICU4         <---------ANAC58 -----ARR11(3)   <---------At5g28300  ----------->RAV1(2)<---------ICU4    <----------DOF2   tctcttcattgcactcattaacagtgttgtcttctgcatcccctgaaataatttccccatgatgataccaatccattcttttcttgtaagcctcatccat  12377500                                                                                                    <                                                                                                 ----                                                                                                 <---                                                                                           <------NtERF2                                                                                          ------>NtERF2                                                                                         --------->RAP2.3(2)                                                                                         --------->ATERF1(2)                                                                                         --------->DEAR3(1)                          <---------ALFIN1                 --------->YAB1                <---------ATERF1(2)                         <---------ZAT14                --------->WOX13(1)               --------->RAP2.6(2)                         --------->ZAT14   <------ZmHOX2a(2)                            --------->RAP2.3(1)                         --------->ZAT18  <---------ARR14(2)                           <---------ATERF1(1)               <---------ARR11(3)         <---------ARR11(3)                     <-----------HVH21  -               --------->ARR11(3)         --------->ARR11(3)                    --------->bZIP60(2)-- <----------DOF2 ------>ZmHOX2a(2)        --------->ARR14(2)               <-----------GT1<---------ATERF1(1)   tccctttcttactagatgatctactactacactgcctaaatgacgatctacatttcgacaatcagaacatggacatataaccatgtcactgccgcctaca  12377600                                                       <----------DOF2                                                    <---------MYB52(1)                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                               <---------ARR14(2)                                               --------->ARR14(2)                                               <---------ARR11(3)                                         --------->ANAC58                                         --------->ANAC46 ---------At4g35610                      --------->ANAC58 ----->At4g35610               <---------ALFIN1--------->GLK1(2)                       --------->REM1(1) ------At4g35610          --------->ANAC46    <------ZmHOX2a(1)                    ------>MYB46(1) -------->At4g35610       --------->ANAC58  <---------TOE2(2)            ---------->DOF2    --------- --------->RAV1(1)        --------->ANAC58  <---------TOE1(2)    <-----------HVH21 ------>MYB83   ---   gcagcagaaaccaattgaacaaaattccaagccccaatctcatacgcaggatccgttctttagtacatgtcaattgaaagagaccaactacatcagataa  12377700                               <---------ATHB12                            <---------MYB59                         --------->MYB52(1)                     --------->ANAC58                                                 <---------ANAC58                     --------->ANAC58       --------->YAB1                            <---------ANAC58                  <---------ATHB12          --------->AHL20(2)                ------->TEIL        --------->AHL20(2) --------->MYB46(3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----------->GT1------>MYB46(1)      <---------At4g35610       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >At4g35610      ------>MYB83 ------>MYB46(1)     ----------->GT1             --------->PCF2       <- --------------------->ANAC81 ------>MYB83 <---------YAB1       --------->MYB52(1) <---------CCA1(2)   aaaccagaaaataaaaaccaaacaagctaaccaaacattcagataattatacatgtaaaaaaaacatacctgcatagatggacccatgtcttgtccagca  12377800                                                ------------>CBF                                              --------->ANAC46                                            --------->ANAC46                                          <<<<<<<<<GATA-4     ----------->RAV1(1)        -------->P              ----------->GT1--------->AtMYB61<---------ALFIN1     --------->At4g35610  <---------ZAT14 <<<<<<<<<GATA-3   --------->At4g35610              --------  <---------At4g35610     --------->ZAT14 <<<<<<<<<GATA-1   <---------At4g35610     --------->ANAC46 *TSS<---------At4g35610 <-----------HVH21<<<<<<<<<GATA-2   <------NtERF2 <-------MYC3    --------->WOX13(1) --------AHL20(2)   <-----------GT1   ------------>CBF  --------->ANAC46  ------->MYC3  ------------>CBF   ttttatctgctacccttgtttaaaaccgttcacagagtaattcaatccaccacaattcaggcagcaacacagtacatgtgtaatacacaaaacaatcaca  12377900                                                                                                 <---                                                                                               ------                                        --------->ZAT6                                 <-----------HVH21                              --------->MYB46(3)                                      <----------DOF2                            --------->MYB52(1)                               <-------GAMYB ------>ZmHOX2a(1)                            <---------DOF5.7(2)                             <---------MYB46(3) ------ --------->ZAT6    ------->GAMYB   --------->YAB1          <---------DAG2--------->CCA1(2) --------->AtLEC2 ->YAB1      <----------DOF2<-----------GT1        <-----------GT1  ---------->DOF2 --------->At4g35610   ttaacactaatttttctttaacagacacattaacgactcataagactaagaaattactaaaccttttgaataaagagatggttatgcgctgtcctgcaag  12378000                         <---------TOE2(3)                    <---------ICU4                   <---------YAB1                   --------->ICU4                               --------->TOE1(3)        ----------->RAV1(1)                                     --------->TOE2(3)    ------>ZmHOX2a(1) <---------YAB1                          ------->TEIL ------ARR11(3) <---------YAB1                            --------------->AtSPL8 --->ANAC58     --------->ICU4                  --------->TOE1(3) --->ANAC58------->GAMYB---------->DOF2         --------->TOE2(3)   <---------CCA1(2)       ------>NtERF2   aaattcctgccaacagagatgattattaaagtatgaaatcgatttgagaaccctaaattgtttgaaccctaaatctgtaatcgatttgatatgcagcctt  12378100                          <------MYB83                          <------MYB46(1)                                           --------->ANAC58                         --------->MYB46(2)                           --------->GLK1(1)                         --------->MYB59  <---------AHL20(2)          <---------GLK1(1) ---------->DOF2                <---------MYB52(1)------>ZmHOX2a(1)        --------->TOE2(3)        --------->ANAC58               --------->TOE2(3) <---------MYB59           --------->TOE1(3) --------->GLK1(1)               --------->TOE1(3)--------->YAB1 --------->ATHB12<---------CCA1(2)  ---------->DOF2 xxx   acttataagttgaaaacccttaattgtttggtaatcctaactatgaaattgatttgataaaccctaaatctgaaatctgaaatctaaagccaaagttaga  12378200                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                       <---------YAB1                                                            --------->MYB52(1)   --------->ARR14(2)                                                           ----------->HVH21     <---------ARR14(2)                                                         --------->ANAC46        <---------AGP1                                          <----------DOF2--------->ANAC55(2)     ------->TEIL                                         <---------DAG2  <---------At4g35610 <---------LBD16                <------ZmHOX2a(1) --------->ARR11(3)    <---------TOE1(3)   --------->MYB52(1)              <---------TOE2(3)   <---------ARR11(3)    <---------TOE2(3)  ----------->HVH21            ---------->DOF2      <---------GLK1(1) >>>>>>>>>>GATA-1    --------->ICU4               < xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------GT1  <-----------RAV1(2)<---------WOX13(1)       <-   aggaattgaacttgtaaaggatgaaaccaagttagaaatcttaccttttactcgatttcaggtaacagaggtgaagattgacggatctatgaagaagctc  12378300  Previous    Next  AGI:  At5g32825.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-296 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 12371071    to: 12377801    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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