Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->TOE2(2)                           ----------->RAV1(2)                          --------->GLK1(2)                                                     <----                         <---------GLK1(2)                                                 <---------ALFIN1                         --------->ARR14(2)                                             --------->ZAT6                      <---------HSFB2a(2)                                              --------->ZAT18                      --------->HSFB2a(2)       --------->MYB46(3)                     <---------ZAT18                     <---------LBD16       --------->HSFC1(1)                      <---------MYB52(1)      ----------->RAV1(1)<---------ARR14(2)<---------HSFC1(1)--------->YAB1      <---------ANAC58 --- ----->GLK1(2) --------->CCA1(2)           --------->HSFB2a(2)                   <---------ANAC58<--- ---->ARR11(3)--------->ARR11(3)           <---------HSFB2a(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ARR11(3)<---------ARR11(3)<-----------HVH21     --------->At4g35610    <----------DOF2  -------   ttttgaaacaccagaagatatatcccagaacctgtgtcagcatttctcgaaccactagctgtatcatacaaactttcaactttccgttttgcactacctc  12318400                                            <-----------TGA1                                            <-----------HVH21                             -------->P    --------->ANAC58      <-----------GT1        ------->TEIL  --------->TGA1a --------->ALFIN1            ========================MYC_MYB    <---------ALFIN1 -----LBD16                 <-----------GT1--------->O2  ---------->DOF2 ------>LBD16       <------MYB83           --------->ANAC46--------->ANAC58 ------ANAC46       <------MYB46(1)        --------->ANAC58--------->ANAC58 -->AtMYB61         <---------ANAC46       =========================bZIP_DOF       <----------DOF2   cgggtgtttcacaactcaaatttggtgtatcaaccttctcttcaaacgtcacaaacaagttaagccccatgttttctctaagggtctttagatagtattg  12318500                                          --------->MYB52(2)                                          <---------MYB46(3)                                          <-----------RAV1(1)                --------------->AGL15            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <-------TEIL              ------->GAMYB          <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ZAT14          <--------          <---------ANAC58  --------->ZAT14           <---------GLK1(2)----------->GT1  <------ZmHOX2a(2)          <---------ANAC46 --------->ALFIN1        --------->YAB1  --------->ZAT14  <---------TOE2(3)    -------->P <-----------GT1          <----------DOF2        --------->MYB59    ---------->DOF2 ---    ------>MYB46(1)  --------->ARR14(2) ------>ZmHOX2a(1)      <---------------AtSPL8 <------ZmHOX2a(1)    ------>MYB83     <---------ARR14(2)--------->TOE2(3)  <---------YAB1     <---------------AGL15---   aagtccaacctcgcttgtaaccagaaccggtggagtcttatcctttgttgcaaacatattcttattcggtacagagtaacttaataaaggatcaacaccc  12318600                                 ------->GAMYB                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                                          --------->ARR11(3)                             <---------WRKY38(1)                                          --------->ARR14(2)                             <---------WRKY12                                --------->DAG2    --------->DEAR3(1)<---------ANAC58                                ------>ZmHOX2a(1)   <---------ARR11(3)   <------NtERF2      <---------ANAC58                                --------->LBD16     <---------ARR14(2)  ------>NtERF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------LBD16     <---------CCA1(2) -ALFIN1         <---------GLK1(2)   --------->MYB46(3)     ----------->GT1 ---------->DOF2  xxxxxxxx ------>WRKY12   <---------ARR14(2) --------->ANAC58       <---------------AtSPL8      --------->ANAC55(2) -------->HVH21  --------->ARR14(2) --------->ANAC58       --------------->AtSPL8      <---------ANAC55(2)   ttgacgccgaactctggcagaattgcttcgttcaacgcaaccaatgttattccctcatgaattggtacaatcctggagaaaagttgattacatatctcca  12318700                                                                                                  ---                                                                                              <------MYB46(1)                                                                                              <------MYB83                                             <---------YAB1                                  --------                                      <---------MYB52(2)        *TSS  <-----------HVH21   --------->GLK1(2) xxxxxxxx>smallRNA(i)    --------->MYB46(3)--------->YAB1 --------->WOX13(1)         ---------->DOF2<   atttccactctccattcgaagaacaaaaccactctccacaaataaccatgatatagtcgtccatcaaaccctggtcatataaacaaaaaaagaatttggt  12318800                                                                                ------>ZmHOX2a(1)                                                                      <<<<<<<<<ARR2    <---------YAB1                                    <---------bZIP60(1) ------->TEIL    --------------->AGL15                  <---------AHL20(2)         --------------->AtSPL8    <---------------AGL15                 <---------AHL20(2)          <<<<<<<<<ARR1 --------->GLK1(2)            --------->ANAC58        --------->bZIP60(1) --------->SPL7 -------->ARR10               --------->ANAC58        <---------GLK1(1)--------->YAB1     <---------YAB1 ->MYB59                      --------->ANAC46     <---------YAB1     --------------->AtSPL3 ---------GLK1(2)          --------->ZAT18--------->AHL20(2)       --------->MYB46(3)  ----------->HVH21   tagattcttatttcagtaacaaaatagaatgcacgacatttcattttaatttgatgatatcagttttcaacaatcgtacctccttcgacatgacaattgg  12318900                                              <---------ANAC58                                              <---------ANAC46                                              <---------ANAC58                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                           <---------GLK1(1)                       ----------->GT1                                           --------->GLK1(1)                      ----------->GT1                       <-----------ARR10  --------->ARR11(3)             --------->ANAC58                       <---------ARR11(3) <---------ARR11(3)             --------->ANAC58                       --------->GLK1(2)  <---------ARR14(2)            --------->DAG2--------->AHL20(2)    --------->CCA1(2) <---------GLK1(2)   --------->ARR14(2)           ---------->DOF2<---------AHL20(2)   ccaaagatagaagattgaaacccagaatcttatgtgtttcaagggatctcgtgtttcagttttttgttactcgaaaagcaagggaagtttaattgtttta  12319000                                --------->TOE1(1)                               ------>ZmHOX2a(1)                                                -----                           --------->ARR11(3)                                                   -----                           <---------ARR11(3)                                                   -----                           <---------ARR14(2)                                                 -------                           --------->ARR14(2)    <-------TEIL                                ------>ZmHOX2a(1)                   <---------ARR14(2)           <---------MYB52(1)                       <---------ARR14(2)                   --------->ARR14(2)       <---------At5g28300                          --------->ARR14(2)                  <---------CCA1(2)        <-----------GT1                              ------>MYB83             ----------->GT1<------ZmHOX2a(2)<------------MYB.PH3(1)                    ------>MYB46(1)  <---------At4g35610    ----------->ARR10 --------->MYB52(1)  <---------ETT(2)    <-----------GT1   tctcagccgtttaaactgttatatccgacgatcctcgttccacaataaccgttcattgtaaaccgtagacaaaaaccgtattttttaaccaaatcctaac  12319100        --------->MYB52(1)      ---------->DOF2     ---------->DOF2    <---------ARR11(3)                                                    <------ ---->ANAC58            --------->ARR11(3)                                           <---------YAB1<- ---->ANAC46           <---------GLK1(1)                                          <---------AHL20(2) ---->ANAC58           --------->GLK1(1)                <----------DOF2   --------->TOE2(3)   ------- -->MYB52(1)         --------->YAB1         ----------->GT1   <-----------GT1    --------->AHL20(2)--   gaaaccaaaaaaccggtttggaatgatatctgaatcgaatttgagggggtatatatgtctttttttactcaaattgcctcaaattttataagtgtctgta  12319200                                                                            <---------AHL20(2)                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                           <---------AHL20(1)                                                                           --------->AHL20(1)                                                                          --------->AHL20(2)                 --------->HSFB2a(1)                                   --------->AHL20(2)                 <---------HSFB2a(1)                                  <---------AHL20(2)           <---------HSFB2a(2)                                        --------->AHL20(2)           --------->HSFB2a(2)                                     --------->AHL20(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------AHL20(1) ---ZAT14  --------->HSFC1(1)                                 --------->AHL20(2)           --------->AHL20(2) --------ZAT18 ---------->DOF2                                <---------AHL20(2)   <-------GAMYB -->ZAT14  <---------HSFC1(1)                           <-----------HVH21 <---------AHL20(2)       <- ------->ZAT18<------ZmHOX2a(1)                      <-------GAMYB--------->AHL20(2) ----------->GT1   gtgcataatgtttctaggaaagtgcctcattgtgctacattccctaaacttatttcgttgtcaaataaatatataaattaatttgggttgaaaaaaaata  12319300  Previous    Next  AGI:  At5g32628.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to mutator-like transposase, putative Range:  from: 12317562    to: 12318764    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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