Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ARR14(2)                  ---------->DOF2                                             --------->ARR14(2)         ------>ZmHOX2a(1)                               <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <---------At4g35610     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             ----------->RAV1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  --------->At4g35610     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->AtLEC2                  <---------At4g35610    ------->GAMYB     --------->AtLEC2   --------->ANAC58                --------->MYB46(3)      --------->ANAC58   --------->ANAC58   --------->ANAC58               <---------At4g35610--------->GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC46   --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC58<-------TEIL   --------->TOE2(3)            - <---------HSFB2a(2)         --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --- --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(s) --------->AtLEC2--------->TOE1(3)          <-- --At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->RAV1(1)----------------->AG     <-----   cttccagatagctcgtcaacagctccaaatcacctgaaatcaacgcaaatatgcaacatgcatgcaaaactatcctaaacatgcaaagtgatgacaaatg  12118200                                                                                              xxxxxxx                                                                                             --------                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ALFIN1                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->LBD16                                      --------->YAB1                                    --------->ANAC46      ----------->GT1         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ICU4              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------->HVH21            <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxx -------->GT1         --------->AHL20(2)<---------YAB1        --------->ANAC58      ------->GAMYB   < -------ANAC46       <---------YAB1  --------->ICU4           --------->ANAC58    --------->At4g35610 ----ATHB12     ----------->GT1    --------->YAB1             --------->AtLEC2   <xxxxxxxxxxxxxxxxxxx   atgtgaaatggtataaaacagtgattatatgatgctaaaatgatgacaaatggatgctcaaaacatgcaaaatacacacttatcaactcccccaaactta  12118300              --------->ANAC46              --------->ANAC58    <---------ANAC58    <---------ANAC58 --------->WOX13(1) xxxxxxxxx>smallRNA(i) <---------ATHB12 ->TOE2(3)  ---------->DOF2      <---------ZAT2        --------->LBD16                        <------ xxxxxxxxxxsmallRNA(se3)--------->YAB1                --------->ALFIN1                 --------->At4g35610 x>smallRNA(i)--------->ANAC58   --------->ZAT2       <---------ANAC46               <-----------RAV1(2) ----------DOF2   --------->ANAC58         <---------AtMYB61                        <xxxxxxxxxxxxxxxx xxxsmallRNA(i2)  --------->ANAC58       --------->ALFIN1 ------>NtERF2         --------->CCA1(2)   gtctttgcttgccctcaagcaaacaatcaagaacaagctggaggtgaggtttggaagcggggactcagagccaaaacacaagatagaccagatgaaatca  12118400                   <---------ZAT2                                                               -----                   <---------At4g35610                                           <xxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->At4g35610                                       xxxxxxxxxxxxxxxx>smallRNA(s)         ---------->DOF2    <------ZmHOX2a(2)                           --------->WOX13(1)     ------         <xxxxxxxxxxxxxxxxsmallRNA(i)             <---------DOF5.7(2) <---------ATHB12         ------  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->DOF5.7(2) --------->WOX13(1)       -------- ---ATHB12         --------->ZAT2              --------->TOE2(3)  <---------ATHB12           <------- xxxxxxxsmallRNA(le3)      <---------ARR11(3)  --------->TOE1(3)--------->WOX13(1)          xxxxxxxxx   atgtccaagttgaaagttctaagctgcaagatcgaattctacttaaaaacgttaaccatgcctcatcaatcaatcaatccgactcatatgctcgacctac  12118500                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                 xxxx                                                                                                 xxxx                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxx                                                      --------->ANAC58                          -----                                                     --------->WOX13(1)                         xxxxx                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxx                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxx                      <----------DOF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)               xxxxx                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46                         xxxxxx                 ------>MYB46(1)        <---------HSFB2a(2)                                   <------                 ------>MYB83           <---------HSFC1(1)                 xxxxxxxxxxxxxxxx>smallRNA(i) ---->ANAC46    --------->WOX13(1)      --------->HSFB2a(2)         ---------->DOF2    ----------->GT1 >MYB46(1)     --------->AtMYB61        --------->HSFC1(1)         *TSS    xxxxxxxxxxxxxxxx>smallRNA(s) >MYB83      -------->P                <---------LBD16--------->ANAC58  --------->ARR11(3)    xxxxxxx ->AtMYB61  <-----------GT1    --------->ATHB12   <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------TOE2(3) --MYB59 --------->ARR14(2)    --------->YAB1----------->GT1      <---------YAB1      <---------TOE1(3) xxxxxxxxxxx>smallRNA(si3)    <-------TEIL  <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ARR11(3) ----------   acaagttttcaaatctaccaatccctttaacattcattagttctggaacgtgaatcaagcaatgcatcatcaaagaactcatttggctaaggtaaaaggt  12118600                        <---------ARR14(2)                        ---------->TaMYB80                        --------->ARR14(2)                        <---------KAN4(2)     ---------->DOF2   <---------GLK1(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)            ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <------ZmHOX2a(2)                  <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------GLK1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->GLK1(1)    <----------DOF2 ---->WRKY18(1)     --------->HSFB2a(2)     <---------ARR11(3)   <---------------AGL15 xxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------ARR14(2)   --------->TOE2(3)   <--------P xxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->ARR14(2)   --------------->AGL15         <----- xxxxxxxxxxxxxxxxx>smallRNA(i2)       <-----------RAV1(2)       ----------------->AGL2      --------- xxxxxxxxxxxxxxxxxx>smallRNA(se3)  ----------->HVH21      --------->ATHB12      xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->HSFB2a(2)      -------->HAHB4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ID1       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(s2)   <---------HSFB2a(2)     --------->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >DOF2       --------->PCF5<---------YAB1   --------->ARR11(3)<-----------GT1   ---------->DOF2------   caagagacaaagatggtcccttacagaatatgcttctgtaacaggggatctctcaaaaaatgattaacctttagtagaatgctaaaggtaagtcccgagc  12118700                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      --------->ZAT6               --------->ARR14(2)                                                 <---------ARR11(3)               <---------ARR11(3)                                                 --------->ARR11(3)               --------->ARR11(3)                                        <---------------AGL15               <---------ARR14(2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <-----------GT1 ----ZAT2  --------->CCA1(2)--------->LBD16 ------->TEIL                 --------------->AGL15 >LBD16 <---------ZAT6  -------->P <-----------HVH21 --------->YAB1     ----------------->AGL3 --->ZAT2 xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ATHB12               ----------------->AGL2   <---   tatgcatatagagataagatcccatctacccagagtatgtcaaatgaagctctaatggtaatcccatctccaatcccaatataagaacttaactctaccc  12118800                                 <---------ICU4                                 --------->YAB1                 <-----------GT1<---------YAB1          ------->TEIL <----------DOF2                                                    --------->MYB52(1)     --------->YAB1    <---------DAG2                                                    <xxxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <-------TEIL    <-------TEIL---------->DOF2 --------->ICU4                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2                  xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2       <------ZmHOX2a(1) <----------DOF2  <----- -------DOF2 <----------DOF2    <---------ATHB12      --------->ZAT6       <---------ALFIN1    ------   tttgcattcatgaatcttttaagccctttttctaatcattcttttcttttctcttaactctaggagaagttttctcaacactttgatacatctagcggat  12118900                      <---------ANAC58                 <---------TOE1(3)                 <---------TOE2(3)           --------->MYB46(3)  <-----------GT1      <----------DOF2 <---------ANAC58  <---------GLK1(1)  <-------TEIL    --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->GLK1(1) --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-------- xxxxxxxxxxxxsmallRNA(si3)    <-----------GT1--------->MYB52(1)                        <----------DOF2 ----ARR14(2) <---------MYB52(2)<---------TOE2(3)  <----------DOF2                 <----------DOF2 --->ARR14(2) <XXXXXXXXXXXXXXXXXXXXMIR852  xxxxxxxxxxxxxxxx>smallRNA(i)       <---------ARR11(3)   ttggatttctttaacaactaaggttcttgtttttaacattttaaaaccaagggcttttgcccatcttcaatagctatcaagaactctttcttttctttac  12119000                                                                                       <---------DAG2                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ------->GAMYB                                     <---------ANAC58                             --------->MYB46(3)                                     <---------ANAC58         <----------DOF2    -------->P                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <-----------GT1                    <---------DAG2  <---------At4g35610      <---------DAG2  ------->TEIL     <------                    <----------DOF2 --------->At4g35610   <-----------GT1 <---------ATHB12  ---------          <----------DOF2       <----------DOF2        <----------DOF2  --------->WOX13(1) <---------         --------->TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------YAB1   <----------DOF2 --DOF2  --------->TOE1(3) <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------DAG2   aaatcccaaaacctttactagactttttctgcttctttagcttacttcacctagagtcttttaccttttcttatcaatgaatcaacccccttttttcttt  12119100  Previous    Next  AGI:  At5g32473.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 12117087    to: 12118567    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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