Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                              -------                                                                                        <-----------ARR10                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                        --------->GLK1(2)                                                            <---------AHL20(2)          <xxxxxxxxxxxx                                                           <---------AHL20(2)          --------->GLK1(1)        --------->ATHB12                                   --------->AHL20(2)          <---------CCA1(2)       --------->ICU4                          <---------AHL20(2)           xxxxxxxxxxxxxxxx>smallRNA(i)       <---------YAB1             --------->YAB1           <---------AHL20(1)       --------->LBD16 -------AHL20(2)         <---------ARR14(2) --------->AHL20(1)         --------->HSFB2a(2)   -------- ----->YAB1----------->GT1        --------->AHL20(2)----------->GT1    <---------HSFB2a(2) xxxxxxxxxx ------AHL20(2)          <---------GLK1(2)  <---------AHL20(1)    <----------DOF2  --------->ANAC46 < ----->AHL20(2)          --------->ARR14(2) <---------ARR11(3) <-----------GT1    <---------LBD16  xx   taaaacgggatgattgtaaaattcccaaattctcaattaaaaacaatatttttttggttaatttttttcttttctagagtcttctccgcaaatctcgtta  12093700                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                 <------NtERF2                                            <---------AtMYB61                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          <------ZmHOX2a(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     <---------At4g35610 --------->ICU4                     --------->At4g35610<---------TOE2(3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)            <-----------HVH21          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <-----------GT1  --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)                             - -----DOF5.7(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<------MYB83<---------ICU4                           --- -->DOF5.7(2)----------->HVH21  --------->AHL20(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------- xxxxxxxxxxxsmallRNA(le3)      --------->YAB1<------MYB46(1)  <---------ETT(1)          --------->ANAC58 ->TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------REM1(1)                        --------->ANAC46 xxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------YAB1 <------ xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)        <---------GLK1(2)--------->RAP2.6(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------TOE2(3) <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ANAC58   atggtttttaaaccggtgacagtagctgcttaaaaataatgtaaggatggtgtcgctattaattccgacaactctagaattttgatattcaagccgcatc  12093800                                                                                               <-----                                                                        --------->MYB52(1)     <-----                                                                     --------->TOE1(3)      ---------                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------ICU4                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ----------->GT1                                         --------->CCA1(2)           <--------      --------->YAB1                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ATHB51                                          --------->ARR14(2)        --------->ANAC58   --------->YAB1             --------->GLK1(2)                <---------ARR14(2)   --------->YAB1 ---------->RAV1(1)----------------->AGL1                   <---------TOE1(3)       <---------ICU4 ------>At4g35610 <-----------------AG                      <---------TOE2(3)      <xxxxxxxxxxxxxxxxx >LBD16<---------TOE2(3)      <---------ARR14(2)           <-----------GT1 ------->GAMYB --------->ANAC46 -----HVH21   <---------GLK1(2)                       <----------DOF2--------->TOE2(3)   --------->ANAC58   agcgacaataatgtaagaatttcgattttgggaatctagggttttcgattaagagactttttaacgatatgccttaactgacttaatcaacacgaattcg  12093900                                                                              --------->ATHB12     --                                                                             <---------ATHB12      <-        ---------->DOF2     <------ZmHOX2a(1)                                --------->ICU4        <- ----ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------YAB1    <----- ----ANAC58               <---------TOE2(3)                         --------->AHL20(2)----------->HVH21 >ARR14(2)         --------->AHL20(2)                    <----------DOF2    <---------TOE2(3)  ------ -ARR14(2)       --------->TOE2(3)                    <---------YAB1--------->YAB1  --------->At4g35610 xxxxxxsmallRNA(si3)<---------AHL20(2)       --------->YAB1        <---------ATHB12 <---------At4g35610   tgatcaaatcgaaagtcaacataaaattgaggattgaaatcactaaatcaaaacttatgctttaaaccaataaaaactaatgatttagatgacattttta  12094000      <----------DOF2                 <---------AHL20(2)   <-----------GT1                    --------->AHL20(2)   ---------->ID1                 --------->AHL20(2)                            --------->AHL20(2)  <-----------GT1                --------->AHL20(2)                        ----------->GT1 ------->AHL20(2)                <---------AHL20(2)                   <---------MYB59 --------AHL20(2)           <---------ARR11(3)                      <---------At5g28300 --------ICU4               --------->GLK1(2)                      <-----------GT1   ------------>CBF ----AHL20(2)               --------->ARR11(3)         --------->WOX13(1)<------------CBF     ------- --->AHL20(2) <-----------GT1  <----------DOF2       ------------>CBF----------------->AGL1  --------   attttttccttttttttaaccatttttcaaaatctttaaattaaaaaacttctctatcaatctccagttttaccgaattgaaaaaaatacaatctataaa  12094100                                                                               <------ZmHOX2a(2)                                                                               --------->ARR14(1)                                                                               --------->CCA1(2)                                                                <---------ANAC58                                                                <---------ANAC58      ---------->DOF2                                                                <---------ANAC46------>ZmHOX2a(2)                                                     <-------TEIL             <---------ARR14(2)                                                     ------>ZmHOX2a(2)        <---------ARR11(3)                                       ------>ZmHOX2a(1)   <-----------RAV1(1)--------->ARR11(3)                                       =====================HOX2a_HOX2a       --------->AGP1                            <-----------HVH21       <------ZmHOX2a(2)         --------->ARR14(2)           --------->WOX13(1)          ====================HOX2a_HOX2a  <----------DOF2 -->AHL20(2)   <-----------GT1    --------->GLK1(1)--------->ARR14(2)--------->ARR11(3) --->TBP ------------>CBF *TSS    <---------GLK1(1)<---------ARR14(2)<---------ARR11(3)   tttcttcttaaaccaattacccatttcaagggtcagagttcctaaacatgttggatccattttgttgcgaacatctttaagatccgataaaagacttgtt  12094200                                                                                             ========                                                                                             <-------                                                                                           ------>NtERF2                                                                                           <---------At4g35610                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(2)                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                         --------->DEAR4(2)                                                                                         --------->RAP2.3(1)                                                                    ==================HOX2a_HOX2a                                                                    ------>ZmHOX2a(2)   <---------ATERF1(1)                                                                   --------->GLK1(1)    ------>NtERF2                                                                   ===================HOX2a_HOX2a                                                                   <---------GLK1(1)    <---------DEAR4(2)                                                                   <------ZmHOX2a(2)    <---------RAP2.3(1)                                                                  --------->ARR11(3)   <---------DEAR3(1)                                                                  <---------ARR11(3)   --------->DEAR3(1)                                                                 <---------GLK1(1)     --------->RAP2.6(2)                  >>>>>>>>>TBF1                                  --------->GLK1(1)     --------->ANAC46               >>>>>>>>>TBF1                              --------->LBD16              <---------ATERF1(2)         --------->ANAC58                                 <---------HSFB2a(2)         --------->MYB46(3)         --------->ANAC58                                <---------ANAC58             --------->ERF1     ------>ZmHOX2a(2)                                   <---------ANAC58             --------->ATERF1(1)    <------ZmHOX2a(2)                                    <---------ANAC46            --------->At4g35610   --------->ARR11(3)                                    <---------LBD16             <---------At4g35610   <---------ARR11(3)             --------->At4g35610   <---------LBD16        <------ZmHOX2a(1)  <---------GLK1(1)            <---------At4g35610   <---------ANAC58       <---------HSFB2a(2)  --------->GLK1(1)     --------->ALFIN1             <---------ANAC58       --------->HSFB2a(2)    --   tgagagatctcaaggaagaagaagaaggggggaagcagataacatgtctgcgattgtttgcgggaagagatctctgttcgaggacttagccgccgcttct  12094300                        <----------DOF2                        <---------DAG2                       <---------ANAC58                                                            --              --------->HSFC1(2)                                                                   <-              <---------HSFC1(2)                                                                   --            <---------GLK1(2)                                                                     ---          --------->ANAC58                                                  <---------ALFIN1   <-----          --------->ANAC46                                                 =====================HOX2a_HOX2a  =========================MYC_MYB                                  ============================HOX2a_HOX2a  --------->TGA1a      <---------ANAC58                             ------>ZmHOX2a(1)    <------ZmHOX2a(2)  --------->O2<---------HSFB2a(1)                                ===============================HOX2a_HOX2a  =================================bZIP_DOF                  --------->ARR14(2)         <-----------HVH21 ===========bZIP_DOF<---------MYB52(1)                       <---------ARR14(2)      --------->HSFB2a(2) ---DOF2  --------->ANAC58                              ------>ZmHOX2a(1)  ------>ZmHOX2a(1)   ------ ---->ZmHOX2a(1)   <-------GAMYB                  <-----------GT1------>ZmHOX2a(1)   <---------HSFB2a(2)   cctcccgtctccaagaaactccgttgcttttcttcatcttcttcgtctcgtttttctcctccgattcctccttcttcctcacttcttctcgatcacctcg  12094400          --------->ANAC46          --------->LBD16         --------------->AGL15         <---------------AGL15         --------->LBD16                   <------ZmHOX2a(2)                     --------->AHL20(1)        <-----------------AG               =========================HOX2a_HOX2a  <---------AHL20(1)        <---------LBD16                    --------->GLK1(1)                <------ZmHOX2a(2)        <-----------------AGL1            <---------ARR14(2)            <---------HSFB2a(2)        ----------------->AGL2            --------->ARR14(2)           <---------LBD16    --------->ATHB12      <-----------GT1                 <-----------GT1     <-----------GT1  <---------ARR11(3) ------->LBD16                       <-----------GT1     <-----------GT1--------->HSFB2a(2) <-------- -----NtERF2                  =====================HOX2a_HOX2a       --------->GLK1(2)  <---------WOX13(1) ---->NtERF2--------->ARR14(2)====================HOX2a_HOX2a------>ZmHOX2a(1)   --------->AHL20(2) ------>DEAR3(1)          <---------ARR14(2)========================HOX2a_HOX2a  <---------AHL20(2) ----DEAR3(1)             --------->ARR14(2)------>ZmHOX2a(2)======================HOX2a_HOX2a    <-- --->ANAC46 <---------ARR14(2)------>ZmHOX2a(1)    <----------DOF2  <---------GLK1(2) --------->ATHB12   ccgcgattttccccgatatggataagcaggtccttcatttttccgatctccatcttttttttcctgtttcgattctggatcattttattgattgattgtt  12094500      <------MYB46(1)      <------MYB83                                       --------->YAB1     <---------TOE2(3)                                  --------->ICU4                <---------AHL20(2)     --------->MYB59                                  --------->YAB1                  --------->ATHB12 --------->ATHB12               --------->ICU4    --------->ZAT6                     <---------AHL20(2) -WOX13(1)                      <---------ATHB51 <---------YAB1                      --------->AHL20(2) --------DOF2        <---------WOX13(1)    <---------ANAC46                         <----------DOF2   ctttgattaggtttttcgattagattgaaatgaaattatgcaattgtgtttatcagtaatgagcatatcgatagatgtttttggtgatttattggaccta  12094600  Previous    Next  AGI:  At5g32440.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80040.1); similar to unknown [Populus trichocarpa] (GB:ABK95835.1); contains InterPro domain Ubiquitin system component Cue (InterPro:IPR003892) Range:  from: 12094126    to: 12095789    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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