Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------YAB1                                                                                       --------->TOE2(3)                                                                                      --------->YAB1                                                                                      --------->ATHB12                                                                                      <---------ICU4                                                                                     <---------ATHB12                                                                                  --------->AHL20(2)                                                      --------->WOX13(1)          <---------AHL20(2)                                             --------->MYB52(2)                  <---------ATHB12          --------->GLK1(2)                ------>ZmHOX2a(1)                --------->ANAC58          --------->ARR14(2)               <---------MYB52(1)               --------->ANAC46          <---------ARR14(2)              --------->TOE2(3)   ------->TEIL  --------->ANAC58         <---------GLK1(2)           <---------At4g35610 --------->YAB1   <-----------RAV1(2)  <----- ----->ZAT6     ----------->RAV1(1)  --------->At4g35610<---------ATHB12 ------>ZmHOX2a(1)--------->YAB1   cactgaagctcgattctgcaacacaacaattttgtagtcatcttccttagttgtttcaatcatgtatatgttctcctcaggcaataaatcattaatagga  12090800                                 <-----------HVH21                         <---------ANAC55(2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ANAC58                    ----------->HVH21                                                     --------->ANAC58                  <---------ANAC58                                                        -----------                  --------->ANAC55(2)--------->REM1(1)                                   --------->DAG2                  <---------ANAC58<---------MYB52(1)                                --------->LBD16                  <---------ANAC55(2)<-----------GT1                                ------>ZmHOX2a(1)             ------>ZmHOX2a(1) ------>ZmHOX2a(2)            <---------CCA1(2)      <---------------AGL15           --------->YAB1--------->ANAC55(2)              <---------CCA1(2)        --------------->AGL15 -ZmHOX2a(1) =========================HOX2a_HOX2a    <----------DOF2--------->TOE2(3)   ---------->DOF2   acatcatcttcaatcctaatgcgtgacaagtgatccgttacaccattctcaactcctttcttatctcttacctcgatgtcaaattcctgaaaaagcaaaa  12090900                                                            ------>ZmHOX2a(2)                                                          --------->ARR11(3)                                                          <---------ARR11(3)                              <<<<<<<<<TBF1          <------NtERF2         --------->At4g35610                          ------>ZmHOX2a(1)      --------->ANAC46          ----------->RAV1(2)                    <---------YAB1             --------->HSFB2a(2)    --------->WOX13(1)    --------- >GT1 ---------->DOF2--------->YAB1            <---------HSFB2a(2)--------->ZAT18  ------>ZmHOX2a(2)   tccatctcaaaagtcttggtttatcatccttcttcttcatcaaatacttccaggcagcatgatctgtgtgaacaatcacctgtgatctaacaagataaga  12091000                         <---------At4g35610                     --------->AtMYB61                     <---------ALFIN1                    --------->ANAC46                  --------->ANAC46                 --------->MYB46(3)            --------->ANAC58                                                            <---------MYB46(3)            --------->ANAC58        <----------DOF2                                   <---------ZAT14       <---------HSFB2a(2)     --------->ARR11(3)                                     --------->ZAT14       <---------HSFC1(1)<---------ZAT2    --------->ZAT14                      ------>ZmHOX2a(1)       --------->HSFB2a(2)     <---------ARR11(3)    <---------ICU4      --------->ANAC55(2)       --------->HSFC1(1)--------->At4g35610 <---------MYB46(3)          <---------ANAC55(2)    ----- >CCA1(2) ---------->DOF2--------->ZAT2    <---------ZAT14 <----------DOF2  --------->ZAT18     <----   cctgaacttctcgaaagcaaacaccacagctaagaactctttctctgtagttgcataattcctttgagcatcatcaagtgtcctactctgtagttgcata  12091100                       --------->ZAT14                      <<<<<<<ZML2 ------->GAMYB                   --------->HSFB2a(2)                   ------>ZmHOX2a(1)                                                            <xxxx        ------>ZmHOX2a(1)       --------->ZAT2                           --------------->AGL15  <---- <---------ANAC58  --------->HSFC1(1)                                    <---------------AGL15------- <---------ANAC58  <---------HSFB2a(2)                                   *TSS                <------- ---->ATHB51       <---------HSFC1(1)                       --------->ZAT6       <---------ANAC46<--- -----ICU4  ------>ZmHOX2a(1)   <---------ZAT2         --------->YAB1 <-----------GT1 ------->TEIL   atttcttatccttcctctgtcctagaacagtcccaactgcaaaatcacttgcatcactgataacactgtattttactcattttaggtgtatgtttatcat  12091200                                                                                                    x                                                                                                    x                                                                                                 xxxx                                                                                                xxxxx                                                                                               <-----                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            <------ZmHOX2a(2)  <-----                                                                           --------->ARR11(3)  <-----                                                                           <---------ARR11(3)  <-----     <----------DOF2                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------ZmHOX2a(1)xxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(i2)       <-----------GT1                      --------->YAB1xxxxxxxxxxxxx -----YAB1                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->YAB1                   <---------CCA1(2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --YAB1                  --------->YAB1        <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------ICU4         --------->AHL20(2)       <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xx   catttagctttgcatttgctcattatatcatatcattttgcaccattttagcttattttgcatacttaggcatctaggatcatcttgcattcgcattgca  12091300                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       ----------->RAV1(1)                                                                     --------->ZAT2                                                                     <---------ZAT2                                                                     --------->At4g35610     <---------ANAC58                                                <---------At4g35610     <---------ANAC58                                          ====================RAV     <---------ANAC46                                          <-----------RAV1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          xxxxxxxxxxxxxxxx>smallRNA(i)  <---------AtMYB61  ---------->DOF2                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         ====================================HOX2a_HOX2a xxxxxxxxxxxxxxx>smallRNA(s)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <------ZmHOX2a(2) xxxxxxxxxxxxxxx>smallRNA(le3)                              --------->ARR14(2) ----ANAC58       <-------TEIL                              <---------ARR14(2) xxxxxxxxxxxx>smallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(i2)           <------ZmHOX2a(1)    <xxxxxxxxxxxxxxxxsmallRNA(i) ----AtLEC2    --------->At4g35610  xxxxxxxxxxxxxxxx>smallRNA(i)     <------NtERF2                --- ----ANAC58    <---------At4g35610  ===================HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ANAC46  <-----------RAV1(2)---------->DOF2     <xxxxxxxxxxxxxxxxsmallRNA(i)          =========== xxxxxxxxxxxxx>smallRNA(i2)----------->GT1      <------ZmHOX2a(2)--------->ANAC46         =========== xxxxxxxxxx>smallRNA(i2)  ----------->GT1    xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ================================HOX2a_HOX2a           ------>ZmHOX2a(1)   tgttttggtgtgttttcaggtgcaaaaggagtttaaaaggactctactcgatccattcactcgatccaggcagctacagaagaggcatcatcctactcga  12091400                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------At4g35610            <-----------RAV1(2)          ====================================HOX2a_HOX2a     ------>ZmHOX2a(1)          <------ZmHOX2a(2)                                  <---------LBD16         <---------ARR14(2)                                <------ZmHOX2a(2)         --------->ARR14(2)                               <---------ARR14(2)           <---------ZAT18  --------->ZAT14 --------->At4g35610              --------->ZAT14                     <---------ZAT14 <----------DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i)     <----------DOF2              <-------GAMYB --->ZmHOX2a(2)<---------MYB52(1)      ------>ZmHOX2a(1)  --------->ARR14(2)   ---------------------- ====HOX2a_HOX2a<--------P             ===========================HOX2a_HOX2a <---------MYB46(3) ================HOX2a_HOX2a       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------->DOF2--------->ZAT14   tctctttactcgatccaggtagctacagaagaggcatcatcctactcgacctctttactcgatcctggatgctacaaaggaggttgcagtttactcgacc  12091500                        <---------REM1(1)                      --------->At4g35610                      <---------At4g35610                    <-----------RAV1(2)                  --------->TOE2(3)                 <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ANAC46           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <------ZmHOX2a(2)---------->DOF2               ==============HOX2a_HOX2a       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            ------>ZmHOX2a(1)   xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ALFIN1      xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ANAC58          xxxxxxxxxxxxxxxx>smallRNA(i) ==============HOX2a_HOX2a                    --------->ANAC46        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i) ------>ZmHOX2a(1)--------->TOE1(3)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->MYB52(1) ----- ->TaNAC69(2)   -------->P               --------->MYB46(3)   <------ZmHOX2a(2)             xxxxxxxxx   ctcctactcgatcaaggcaacctcagatgaagcagcaaattcaactactcgcccctcctactcgatccatttactcgaccaagggtgaccatctctacaa  12091600                                           --------->ANAC58                                  <---------ICU4                                 ------>ZmHOX2a(1)                              ------>ZmHOX2a(1)        --------->GLK1(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                           <------ZmHOX2a(2)        <---------ATHB12                           =============HOX2a_HOX2a------>MYB46(1)                <xxxxxxxxxxxxxxxxsmallRNA(i)       ------>MYB83             ---------->DOF2------>ZmHOX2a(2)    ------->GAMYB           <------ZmHOX2a(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AtMYB61   <---------ARR14(2)       --------->At4g35610--------->ARR14(2)    --------->MYB46(3)   --------->ARR14(2)       <---------At4g35610<---------ARR14(2)<---------ATHB12   <---------SPL7 <------ZmHOX2a(1)      --------->ANAC58<---------LBD16    <---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ANAC46--------->YAB1<---------GLK1(2)--------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxx xxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(i)<---------MYB59--------->MYB52(1)     <xxxxxxxxxxxxx   gactcggtaagctatcaaagcgtcttcggatcctcctcattccccactcaaccaaacaatctgagcatacggataggagaggatgaagcatctactcgac  12091700  Previous    Next  AGI:  At5g32436.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 8.5e-34 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii) Range:  from: 12089856    to: 12091173    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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