Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <xxxxxxx                                                                                           <xxxxxxxxx                                                                                         --------->ANAC58                                                                                         --------->ANAC46                                                                                         <xxxxxxxxxxx                                                                                         --------->ANAC58                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       ---------->DOF2                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      --------->ARR14(2)                                                  <------ZmHOX2a(1)                  <xxxxxxxxxxxxxxx                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ARR14(2)                   --------->TOE1(3)          <---------ANAC46                      xxxxxxxxxxxxxxxx>smallRNA(i)                   --------->TOE2(3)        --------->REM1(2)                       xxxxxxxxxxxxxxxxx            <-----------HVH21              --------->ALFIN1                       <---------LBD16        <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ZAT14                        <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------At4g35610                 <---------ZAT14                        xxxxxxxxxxxxxxxxxxxx      --------->At4g35610                --------->ALFIN1                   xxxxxxxxxxxxxxxx>smallRNA(i)     <-----------HVH21                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ANAC46               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tccaactcatcagaggtcataccttagtagagctctacttgcagtgtggagaggaattgtattgtctcatcttcatatgctacatacggataagccatca  12051400               <----------DOF2              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxx>smallRNA(i)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ----------->HVH21      --------->At4g35610      <---------At4g35610    <---------HSFB2a(2)    <-----------RAV1(2) --------->ZAT18                                                             --------->GLK1(1) xxxxxxxxxsmallRNA(i)                                                        <---------GLK1(1) xxxxxxxsmallRNA(i)                                                         --------->ARR14(2) xxxxxsmallRNA(i)                                                           <---------ARR14(2) xxxxxxxxxsmallRNA(fl3)           <---------ARR11(3)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(si3)            --------->ARR11(3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxx>smallRNA(si3)  --------->At4g35610                        xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx>smallRNA(fl3)    --------->ALFIN1                           --------->ANAC58 xxxxxx>smallRNA(fl3)   <---------At4g35610--------->MYB46(3)        --------->ANAC58 xxxxxxxxsmallRNA(si3)<-----------RAV1(2)<-----------GT1          --------->ALFIN1 xxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(i)             --------->MYB59     <-------PIF5 x>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------AtMYB61   ------->PIF5 x>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gagtgtccagatgacaactttggtacaggtgctgaacatcttctaacaatccgagttgtgcaagtgaggtcgagcaaggatacctcgtgctacagaactc  12051500                                      <-----------RAV1(1)                               --------->ANAC58                            <---------At4g35610                            --------->ZAT2                            --------->At4g35610                            <---------ZAT2                          ========================RAV           --------->At4g35610                          ---------->CDC5                   <------MYB46(1)                          <-----------RAV1(2)               <------MYB83                         ------>ZmHOX2a(1)                 --------->MYB111(2)                   <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->MYB46(2)                 --------->YAB1--------->ANAC58            --------->MYB111(1)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->MYB59               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------ZAT14        xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------->ZAT14                                  --        ---------->DOF2 --------->TOE2(3)         --------->ZAT18                        ------->TEIL     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ANAC58   <---------At4g35610     xxxxxxxxxxxxx  <---------At4g35610  <-----------------AGL1<---------ANAC58 <--------P <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i)<---------ZAT18        --------->GLK1(2)         <-   attcagcttgaaaagcctaacatattcctcagcaggcaatatgttgggcttgtgcagaagtttggtagctctgcgagtctgttcaggcatgtactcgtct  12051600    ------>ZmHOX2a(2)   <------ZmHOX2a(2)   xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ARR11(3)  --------->ARR11(3)  <---------ARR14(2)  --------->ARR14(2)  <---------AGP1  <---------GLK1(2)                                                   --------->HSFB2a(2)  <---------ARR14(3)                                        --------->ZAT2  --------->AGP1                                            --------->At4g35610   <---------ARR14(2)  --------->ARR14(3)                                        <---------At4g35610<---------ANAC58  <-----------ARR10                                   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2) <---------CCA1(2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->HSFB2a(2)                             <---------LBD16<----------DOF2  <---------ANAC58    xx xxx>smallRNA(i)              <-----------HVH21------>ZmHOX2a(1)      <---------HSFB2a(2)  --------->ZAT14 --------HSFB2a(2)   <---------CCA1(2)    <----------DOF2   <---------ZAT2     <---------ANAC46  xxxx   tccagatcttcgtctataagctcatacctctctgtcatcgctctctttcctcgggctatctcagctttccttctgaaactttcgtattctctctgttctc  12051700                                                         --------->ARR11(3)                                                         <---------ARR11(3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->GLK1(2)                     --------->ARR14(2)                  <---------ARR14(2)                ------->GAMYB                  <---------GLK1(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------YAB1                   ----------->RAV1(1)                 ----------->RAV1(2)             ----------->TGA1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------YAB1*TSS           <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(s) <------------AtMYB77 <---------GLK1(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ICU4     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <------ZmHOX2a(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ARR11(3)   --------->At5g28300 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------REM1(1)    <---------ARR14(2)   <---------YAB1   tctctggccttgaagatgacgattctgtctcatccatgttgtagtcaggatcaacagaagaactgccactgtaattgctcatgattctcctgtagggatt  12051800                                                                    ------------>CBF                                                                   --------->ANAC58                                                         <------------CBF                                                        --------->ATHB51                                                        <---------ICU4                                                        --------->ATHB12                                                       <---------ATHB51                                                       <---------YAB1                                                       --------->AHL20(1)                 ------------>CBF           <---------ATHB12       --------->ANAC58               ----------->GT1   ---------->DOF2       --------->ICU4   <---------ATHB12    <--------        --------->At4g35610    xxxxxxxxxxxxxxxx>smallRNA(i)  ------------>CBF          <---------AtMYB61        <---------At4g35610--------->MYB52(2)          <---------AHL20(2)       <------------CBF    -     ---------->DOF2     <--------P     ------------>CBF-------->ATHB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tagaactcaaagctgaaatgtcaataggttagtctcaaagatagcaatgaaaccaaaattattgtcaataggcaatgaaacagattgaattggtcgagta  12051900                                --------->At4g35610                                <---------At4g35610   --------->ARR14(2)                                <---------ZAT2        <---------ARR14(2)                     --------->At4g35610              --------->GLK1(2)                      <-------                ----------->RAV1(2)                   <-----------ARR10                      --------    --------->ZAT14  <---------At4g35610              --------->ARR11(3)                   xxxxxxxxxx    <---------ZAT14  <---------ZAT2                   <---------ARR11(3)                 <-----------HVH21 -------AtSPL8<---------ARR14(2)--------->ZAT2       <---------CCA1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)< -------->GLK1(2)--------->TOE1(3)   --------->At4g35610    ----------->HVH21      --------->MYB46(3)   caattctgtactcgagtaacctgagctgtttctgagcttagatgaattgaatcgagtatcttctcacaggtcgagttggaatgctacagccggtcgagtg  12052000                                         <---------ANAC58                                         <---------ANAC58                                        <---------HSFC1(2)                                        --------->HSFC1(2)<---------HSFB2a(1)                                       ----------->ARR10  --------->HSFB2a(1)                               <---------MYB46(3)         <---------HSFC1(2)     ---------->DOF2 --ANAC46                     <---------ZAT6           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --->GT1   ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxx>smallRNA(si3)    <---------AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->REM1(2) ---------ANAC46      ---------->DOF2  <-----------ARR10 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   aatcgtggagatagagtgaatcgtgaaagctagtggtcgagtagcttctctgaagttggaaggctctactgaattcacgaacaagaagccgagtagaatt  12052100                                                         <------NtERF2                                                        ------>NtERF2                                                        <-----------TGA1                                                        <-----------HVH21                                                       <---------bZIP60(1)                                                      --------->RAP2.3(1)                                                      <------NtERF2                                                     <---------RAP2.3(1)                                                     <---------ATERF1(1)                                                    <---------DEAR3(1)                                                   <---------ORA47(1)              xxxxxxxxxxxxxxxx>smallRNA(s)                                                   --------->RAP2.6(3)             ---------->DOF2                                                   --------->SPL7                --------->LBD16                                                  <------ZmHOX2a(1)         ----------->HVH21--------              <----------DOF2                    ----------->HVH21        --------->ANAC46  ---------             <---------ANAC58                <------NtERF2<-----------RAV1(2)   <---------LBD16             <---------ANAC58               <---------DEAR3(2)           xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------DEAR3(1)       ----------------->AGL1 <---------     <-----------HVH21                    --------->RAP2.6(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgcaggggtcgagtgctttcacgaggtcgagtgagtttttgaagtcggctaggacggcgtcagtcgagtgcctctacgagaccgggaagcgaggtcgag  12052200                                                                                    <---------ANAC46                                                                                 ----------->HVH21                            --------->ALFIN1                                     --------->ALFIN1                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       ----------->TGA1                       <---------MYB46(3)                                       <-----------HVH21                      <--------P                                              <---------MYB46(3)                    <---------DEAR3(2)                                     <-----------HVH21                    --------->MYB55(2)                                    <------MYB46(1)                    <---------MYB46(3)                                    <------MYB83                   <---------DEAR3(1)                                    <---------AtMYB61                  <------NtERF2                                          <---------MYB46(3)                 <---------RAP2.3(1)                                     --------->MYB59        -----                 <---------DEAR4(2)                                    <---------ANAC46         <----                <---------RAP2.3(2)           <---------ZAT14        <---------MYB46(3)         <----                <---------RAP2.3(3)           --------->ARR14(2)  <---------ANAC46--------->MYB52(1)       <---------YAB1<-------GAMYB            --------->ZAT14     <---------bZIP60(2)           ----- ->ETT(2)       <---------DEAR3(1)            <---------ARR14(2)--------->ZAT14<-------GAMYB<-------- >ALFIN1      --------->CCA1(2)      <---------AtMYB61          --------->ZAT18--------->At4g35610 --HVH21 ---------->DOF2  <---------ANAC46 <---------ANAC46     <---------ZAT14<---------At4g35610 --   cgattttttatgaaagagacggcggttgatgtggatgaattggtcgagtatacagaaggaatcgagtgaagtggtttggtcgggtgacggagggaatgag  12052300  Previous    Next  AGI:  At5g32423.1    Description:  transposable element gene. Athila retroelement ORF1 protein -related, temporary automated functional assignment Range:  from: 12049923    to: 12051782    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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