Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------At4g35610                                                                                    --------->At4g35610                                                                                    ----------->RAV1(2)                                                                                  --------->YAB1                                                                                 <---------ATHB12                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         ============================                                                                         --------->TGA1a                                                                         <---------TGA2(1)                                                                         --------->bZIP60(1)                                                                         <---------bZIP60(1)                                                    ------>ZmHOX2a(1)    <---------TGA1a            --------->YAB1                          --------->LBD16      <---------ANAC46            <---------ICU4                    --------->ARR11(3)         <---------O2            ----         --------->YAB1                       <---------ARR11(3)         --------->O2           ----- <---------MYB46(3)                          --------->GLK1(1)         <---------TGA2(2)        ----- --->HSFC1(1)                                <---------CCA1(2)         --------->MYB52(1)       ----- ----HSFC1(1)                     <-----------GT1 ----------->RAV1(2) ----------->TGA1        ------- ----HSFB2a(2)         <---------At5g28300   <---------GLK1(1)        ----------->HVH21  ------->TEIL --->HSFB2a(2)        <-----------GT1     <---------YAB1            ----------->RAV1(2)  --------->ARR14(2)   gaatggttcgataataatcccaatttactgctaaatctactattctgatatctcctgagaatttccctaaacctgacgtcttaatcatctgaatctacaa  11206400          <---------ANAC58          <---------ANAC58       <---------WOX13(1)             <-----------GT1    <---------AHL20(2)             --------->AHL20(1)                                   <----------DOF2    <---------YAB1                 <---------AHL20(1)                                <---------ARR11(3)   <---------AHL20(2)              <---------ICU4                                 --------->HSFB2a(2)   --------->AHL20(2)              --------->ARR11(3)                             --------->LBD16  --------->YAB1             --------->YAB1                               <---------ANAC58 =====================bZIP_DOF   <---------AHL20(1)                       <---------ANAC58 ----->MYB46(3)     <----------DOF2<---------ARR11(3)                     <---------ANAC46 ---->ANAC58      ---------->ID1 <---------AHL20(2)          ----------->GT1    ------>ZmHOX2a(2) ---->ANAC58  <---------ANAC58  --------->YAB1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->ANAC46  <---------ANAC58 <---------YAB1    <---------DAG2<---------MYB52(1) <---------HSFB2a(2) -->REM1(1)<----------DOF2<----------DOF2        <----------DOF2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ccaattttaattgctttcttgtcttttacttttataatattttctgtttagctttattcaaaactgttaatctattgtgtgatccgagaactttgtggaa  11206500                                                                                         <---------ARR11(3)                                                                                     ---------->DOF2                                                                               <-------GAMYB                                                                              --------->DEAR3(1)                             <----------DOF2     ----------->GT1             <------NtERF2                         <----------DOF2        <---------TOE2(3)            --------->RAP2.3(1)                    -------->P               --------->ICU4                 ------>NtERF2--------->ARR11(3)                  <---------MYB111(2)      <---------ICU4                   <---------RAP2.3(1)                  --------->MYB46(3)       --------->ATHB12                <---------DEAR3(1)                --------->YAB1            --------->ICU4       <---------CCA1(2)<---------MYB52(1)  <------ZmHOX2a(2)------->GAMYB          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ATERF1(1)   ttcgatccctaagtgctataacaacctctttctttgagagagtagtcattagggtaatttgactcatatcaaatttggcgccgttgccaaagttctcttc  11206600                --------->ALFIN1              <------MYB46(1)              <---------ANAC55(1)                         <<<<<<<<<<AtSR1              <------MYB83                               <---------ANAC46              <---------ANAC46                           <---------ANAC55(2)             --------->MYB59                 <----------DOF2        <-----------GT1             --------->MYB111(1)        <----------DOF2  --------->ANAC55(2)                        <         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ANAC58                             <-- <-----------GT1<---------REM1(1)  <----------DOF2   <---------ANAC58  <----------DOF2            <--   gattcaccattagattaggtgtagaatttagtctaagcttttcttttcttttgttacttacgcgtttttatttctttttcttcttgtgtttcaagagttt  11206700                                                           ----------->RAV1(1)                                                        <---------ANAC58                                                        --------->ANAC46                                                        <---------ANAC55(2)                                                   --------->ALFIN1                                                   <---------ZAT6                                                 <---------ANAC58                                                 <---------ANAC46     --------->WRKY18(1)                                                 <---------ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <---------At4g35610  --------->ZAT2                                            --------->At4g35610  <---------At4g35610                                         <---------At4g35610     <---------ZAT2                                     ----------->HVH21  --------->ANAC55(2)         --------->ANAC58          =================RAV --------->ANAC58         --------->ANAC58          ----------->RAV1(2)  --------->ANAC58         --------->ANAC46          <---------ANAC55(2)  <---------ANAC58  --------->GLK1(1)                --------->ANAC55(2)<-----------GT1<-----------HVH21 ------ZmHOX2a(1)           --------->YAB1  --------->ZAT2--------->ANAC46                      *TSS -------TOE1(3)             ----------->GT1 <---------ZAT2----------->HVH21                  -------- -------TOE2(3)         <---------YAB1  <-----------RAV1(1)<-----------HVH21              <----------   aaggaattcaaacgcaactcaagatgctgatagtaatacctgatgctgctggagtgttacgcgacagagctggtcaggcatacaacgaagagggtcagaa  11206800                                              <---------ETT(2)                                          --------->ETT(2)                          ---------->DOF2<------NtERF2                      ----------->HVH21               ----------->RAV1(2)     --------->ALFIN1               --------->At4g35610 --->GT1     --------->GLK1(1)    ------>NtERF2   ------>NtERF2    <---------At4g35610              - -HVH21      <---------GLK1(1)   --------->DEAR3(1)         <---------GLK1(1)                      --   aatagatgaacagggaaacctgatactataaatcgccgagggtgtcgatcgacaccaagaagaaatcagagcagatggacgacggatgactcttggtgac  11206900                                                  --------->TOE1(2)                                                -------->P                                                ------>MYB83                                              <---------MYB111(2)                                              <------------AtMYB84                                              <------------AtMYB15                                              <---------MYB111(1)                                              --------->AtMYB61                                              <---------MYB46(2)                                              --------->MYB46(3)                                              <---------MYB59                                              <---------MYB55(2)                                           <---------ALFIN1                                           ------->GAMYB            ------>ZmHOX2a(2)             <---------MYB55(2)          <---------ARR14(2)              --------->MYB46(3)          <---------ARR11(3)             -------->P          --------->ARR14(2)             ------>MYB83  ---------->DOF2               --------->AHL20(2)          <---------AGP1                 ------>MYB46(1)                          --------->REM1(1)   ------->GAMYB               --------->ETT(2) ------>MYB46(1)            <-----------GT1 ---------->RAV1(1)            <---------ETT(2)--------->MYB55(1)    --------->HSFB2a(2) ------->REM1(1)          <---------ATHB12<---------MYB111(2)        <---------HSFB2a(2)   tacaacagactggatctattctattccaatcggtctacaatccaaccacctaccttcgaaagaagcgatttcgagataaaccctacattatatactcttg  11207000                                            --------->YAB1                                 --------->ALFIN1              <---------AtLEC2             <------ZmHOX2a(2)                     <---------TOE2(3)          ------>ZmHOX2a(1)     --------->HSFB2a(1)                              --------->DAG2      ------->TEIL<---------ARR11(3) ------>ZmHOX2a(1)<---------MYB46(3)        ---------->DOF2     <   --------->ANAC58             <---------HSFB2a(1) <---------At4g35610  <---------HSFB2a(2)    <----   --------->ANAC58  <----------DOF2 =============HOX2a_HOX2a            --------->HSFB2a(2)    <----   tgagcatgcatcctttccatggtctttcccaagaacatcctatggatcatattgagcggtttgaagacttgatttctagcaataaggcagaaggtgtttc  11207100                                                                                   ----------->HVH21                   <-----------ARR10                                             <----------DOF2                   <---------ARR11(3)                                           ------>ZmHOX2a(2)                   --------->ARR11(3)                                         <---------ARR11(3)     <---------ARR14(2)                                                       <---------ARR14(2)     --------->ARR14(2)                                                       --------->ARR14(2)     <-----------ARR10                       --------->ANAC58                 --------->ARR11(3)     --------->ARR11(3)      <---------ARR14(2)                      <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ARR11(3)      <---------GLK1(2)                      <---------REM1(1)           ----- ---------YAB1   --------->ANAC58            --------->ANAC58     --------->At4g35610           ----- -----ANAC58     --------->ANAC58          ---------->DOF2<---------ANAC58    <---------AGP1    ----- -----ANAC58 --------->AtLEC2--------->ARR14(2)           <---------ANAC58   <---------CCA1(2)-------   ttatgactatcttccctgcaagctcttcccatattctcttgttgggaaagcatcttcttggcttaagcagttgaagcctggatctttgacaacttggaaa  11207200                                                               --------->ARR14(3)                                                               <---------ARR11(3)                                                               <---------ARR14(3)                                                               <---------AGP1                                                               <---------ARR14(2)                                                               --------->ARR14(2)           <----------DOF2                                     --------->ARR11(3)          <---------ANAC58       -------->HAHB4   <---------At4g35610       <--------P               <---------YAB1    <---------ZAT2--------->GLK1(1)                 <--    <---------TOE2(3)           --------->ICU4    --------->ZAT2<------ZmHOX2a(2)        ------->GAMYB  ---------->DOF2             --------->YAB1      --------->At4g35610                  --------->At4g35610 ------>GT1<---------DAG2    <---------YAB1     ========================HOX2a_HOX2a   --------->MYB52(1) ---->ANAC58            <----------DOF2         =======================HOX2a_HOX2a --------->ANAC46 ---->ANAC58         <---------ARR11(3)         <------ZmHOX2a(1)------>ZmHOX2a(2) --------->ANAC58 --->DOF2 <---------ANAC58 --------->YAB1<---------ARR11(3)    <-----------ARR10   --------->ANAC58--   gaaataaaggttgcttttctcaataacttttataatgatgcaaggtctgaggagctgagaatgaagatctctaccttctctcaagaagcaactgaagcat  11207300  Previous    Next  AGI:  At5g29565.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.5e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 11206796    to: 11210602    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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