Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------AHL20(2)   --------->ATHB12                                       <-----------GT1    <--  --------->YAB1       <---------YAB1                              ----------->GT1                <--  --------->AHL20(2) <---------CCA1(2)                             <---------ANAC46               <-- <---------YAB1    --------->YAB1  <-----------GT1        <------NtERF2    --------->AHL20(1)     <--   actattatatgactaagtatatcatatcattggtattttacatttactcgtttaatagtcggcaaattgtcgtaaaatatgttacgactattttgcgatt  11196700                                                                                              -------            --------->LBD16                                                                   -------  ---------->DOF2          <---------AHL20(2)                                                 ------- -------ANAC55(2)         <---------AHL20(2)                                                <-------- -------ANAC58            --------->AHL20(2)                      --------->MYB46(3)      <---------- -------ANAC46    --------->ATHB12        --------->YAB1        <-----------GT1   --------->ARR14(2)- -------ANAC58   <-------TEIL  --------->YAB1        --------->ETT(1)             <---------ARR14(2)<   acttgaaagacacccagggttcattgaatttaatcggaacatagtcataacattgtcggaagaatttaacgactattggacgacgatatgtttcacacgc  11196800      ----------->GT1                          --------->YAB1  --------->ZAT14                             <---------YAB1  <---------ZAT14                            --------->AHL20(1) -->ANAC58                   <------NtERF2   <---------AHL20(2) -->ANAC58                  ------>NtERF2    --------->AHL20(2)                              -------- -->ANAC46  <---------AHL20(2)              --------->YAB1              ------->TEIL       --------->YAB1 -ALFIN1   <---------YAB1  <---------ETT(2)<---------YAB1           <---------TOE2(3)     <---------YAB1 -GT1 <---------ZAT6       --------->ETT(2)--------->ICU4     --------->MYB46(3)      <-------GAMYB -------->ZAT14 --------->YAB1          <------NtERF2       --------->MYB52(1)       <---------MYB46(3) ---------ZAT14 ----------->GT1       --------->ANAC46   --------->ANAC46            <-----------RAV1(1)   tctgtacagtgttattaatcgtgaaattgtcgccaaatagtcgccattataatacgactactcaacgactaatgtatattgtatggtctgttgtcataaa  11196900                            ----------->RAV1(2)                            --------->At4g35610                            <---------At4g35610                                                   ---                            --------->ZAT2                                          <---------TOE2(2)                       --------->ETT(2)                                   ------>NtERF2         <----                       --------->bZIP60(1)                               --------->ZAT18        <----                       --------->ANAC46                                  <---------ZAT18        -----            --------->MYB46(3)         --------->MYB46(3)                --------->LBD16 --------->YAB1      --------->WOX13(1)  <-----------RAV1(2) ----------->GT1           <------NtERF2   <-------TEIL  ----------->GT1  <---------WOX13(1)--------->MYB52(1)                <---------LBD16<---------ARR14(2) ->ICU4   --------->MYB52(1)<---------ZAT2   <---------TOE2(3)   --------->ICU4     <---------TOE1(2)   taagtcgtaaatcaacgactaattgacgacagctggacttaacgactatggtataacgactactgtcattagtcgcggactagtcgtagattcagaatta  11197000                                          <---------ANAC46                                          <---------ANAC58                                          <---------ANAC58                                  <---------ANAC46                                  <---------ANAC58                                  <---------ANAC58                              <---------ANAC58                              <---------ANAC58                                                  <----                              <------------CBF                     --------->At4g35610          <----                             --------->ATHB12                  --------->ARR14(2)        <---------ANAC58 ------>MYB46(3)             <---------MYB46(3)                ------->TEIL     <---------At4g35610 -------GT1                <---------MYB52(1)                  <---------ARR14(2)        <---------ANAC58 -----DOF5.7(2)          <---------MYB46(3)           *TSS     --------->GLK1(2)<-------GAMYB   <---- ---->MYB52(1)  <----------DOF2<---------WOX13(1) <---------MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   acgactactaagtgactactttgtaagtcgttgattgcctgttttcttgtagtggttctaatgtgaatctgatgcctcgttcagttgctatgcgtcttgg  11197100                                                                                            <--------                                           ------>ZmHOX2a(2)                              --------->ATHB12                                          <------ZmHOX2a(2)                              <---------YAB1                                         <---------ARR11(3)                              --------->ICU4                                <-----------RAV1(1)--------->HSFB2a(2)              --------->LBD16                        --------->ZAT6   <---------ARR14(2)            <---------YAB1--------->LBD16 -----ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)                --------->ICU4  --------->ANAC55(2) -----ANAC46          <-----------GT1    --------->ARR14(2)   <-------MYC3         <---------LBD16 -----ANAC58      <----------DOF2        --------->ARR11(3)   ------->MYC3   <---------TOE2(3)  -----   gtattccagtcttgagcctacttttatcactcttgtgttggcagatcgttctactcgaattccatatgcaattcttattgatgttcccgtgatgattgga  11197200                                                                            <---------TOE1(2)                                                                           ------>ZmHOX2a(1)                                                                         <---------HSFC1(2)                                                                         --------->HSFC1(2)                                                                         <---------HSFB2a(1)                                                                         ------>ZmHOX2a(2)                                                              --------->ATHB12                                                      ------>ZmHOX2a(2) <------ZmHOX2a(2)                                                      ============================HOX2a_HOX2a                                                      <-------TEIL     <---------ARR14(3)                                                     <------ZmHOX2a(2) <---------ARR11(3)                                                     =============================HOX2a_HOX2a                                                    <---------ARR14(2) <---------ARR14(2)           <                                                    --------->ARR14(2) --------->ARR14(2)         <--                                                   <------ZmHOX2a(1)   --------->ARR11(3)         ---     --------->ATHB12                              ============================HOX2a_HOX2a        ---    <---------YAB1                                 =============================HOX2a_HOX2a      <--- -WOX13(1)        <----------DOF2  <---------YAB1<---------TOE2(3)    <---------GLK1(1)          <--- ----->DOF2------>ZmHOX2a(1)   <---------DAG2   --------->MYB52(1)    --------->GLK1(1)          ----   aagagcatgattcctacagactttgtagtcttgccttatgagaaggaacctaaggatccattaatctttgggagatccttcgttcacatagttggagcaa  11197300         <---------HSFB2a(2)   --------->ARR11(3) ---------WOX13(1) ------ATHB1                   <-----------RAV1(1) ------>ATHB12      <---------ARR14(2)   ------>ZmHOX2a(2) ------>YAB1        --------->ARR14(2)  <------ZmHOX2a(2) ------ATHB12      <------ZmHOX2a(1)<------NtERF2                              ----------->GT1     -- ------YAB1        =============================HOX2a_HOX2a             --------->WRKY18(1)       <-- ----->ICU4        ============================HOX2a_HOX2a         <----------DOF2         <---------HSFB2a(2)   tgatagatgttcgacaagggaggatagggctgaatgttggcgatctcactatgcagttcgatatgaacactttggtcaagaagggaaaacattctcgata  11197400                                                                                              <------                                                                                              -------                                                                                              <------                                                                                            ---------                                                                                          <---------ZAT18                                                                                          --------->ZAT18               --------->At4g35610                                                        --------->ZAT14            <---------At4g35610                         ---------->DOF2                   <---------ZAT14  <----------DOF2                                    ------>MYB83  <---------AtMYB61 <---------ARR14(2) ------->GLK1(2)                                     ------>MYB46(1)                 --------->ARR14(2) -------GLK1(2)<---------At4g35610                 --------->MYB46(3)               <------ZmHOX2a(1)   gattctttcacttcatcagcttcagatagtatttcagagaagaaattagaagacccactagagcgagttttggtctcttccatagaggatagtgcagatt  11197500                                                                                                 ----                                                                                                -----                                                                                                -----   --------->At5g28300                                                                         ------  ----------->GT1                         ------>MYB83                              ----------->HVH21 ---ARR14(2)                              ------>MYB46(1)                          <-----------HVH21 -->ARR14(2)             --------->At4g35610  <---------ANAC55(2)       <---------ARR11(3)    ------- ---GLK1(2)              <---------ZAT2 <---------MYB59 <---------MYB52(2)      ----------->RAV1(2) -->ARR10                <---------At4g35610  --------->ANAC55(2)       --------->ARR11(3)   --------   tggacagtgaaacttctacatatactaagctgctagatgagaccgaacatgtaatgcaacttacagttgaagaagctcttccatctgtgactccaacgcc  11197600  Previous    Next  AGI:  At5g29562.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.8e-228 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 11197054    to: 11201685    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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