Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->KAN4(2)                                                                                     <---------GLK1(1)                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(2)                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(3)                                       --------->ARR11(3)                         ----------->ARR10                                       <---------ARR11(3)                         <---------MYB46(3)                            <---------LBD16                                      --------->ALFIN1               <-----------HVH21      --------->GLK1(1)                        <---------ANAC46  <---------CCA1(1)    <---------GLK1(2)          --------->ZAT14           <---------LBD16  <---------RVE1(1)    --------->ARR14(2)        <-----------HVH21          ------>ZmHOX2a(1) --------->ARR11(3)    <---------ARR14(2)   <---------WRKY18(1)          ------>ZmHOX2a(1) <---------GLK1(2)   --------->LBD16  <---------GLK1(1)              <---------ARR14(2) <---------ARR11(3)<---------LBD16  --------->YAB1<---------ZAT14    --------->ARR14(2)   aaagattttttgatatgcttcaccggatttttcggaaatgatatcttgacccttcactgaatttgtataagtatcctcctcgggtggatattctaccttg  11057400                                            --------->ALFIN1                                          ============================MYC_MYB                                          --------->TGA1a                      <---------ARR11(3)  <---------TGA1a                      --------->ARR11(3)  <---------ZAT2                   --------->LBD16        --------->ZAT2                  --------->ANAC46   <---------At4g35610                  --------->LBD16    --------->At4g35610                               <---------TOE1(3)                 XXXXXXXXXXXXXXXXXXXX>MIR2111B*                                        <---------TOE2(3)                 --------->LBD16   <---------DEAR3(1)--------->HSFC1(1)          <---------CCA1(2)              <------ZmHOX2a(2) --------->ZAT2       <---------HSFB2a(2)     ----------->GT1      ---              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->HSFB2a(2)--------->ANAC58         <---             --------->ARR14(2) <---------ZAT2      <---------LBD16     --------->ANAC58        <----             <---------ARR14(2) <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ALFIN1     --------->DEAR3(2)--------->CCA1(2)<-----------RAV1(2)   ------->GAMYB  <---------ANAC46   -----   ggctcgaaccgaagcgatccccgagatatagttgagctcggctcaggtgtgttttctggaataacacccgagccaagtatcgtttatctaaggtgttccc  11057500                                                                                  --------->LBD16                                                                                 --------->HSFB2a(2)                                                                                 <---------HSFB2a(2)                                                                       ------>MYB83                                  --------->ALFIN1     <---------ARR14(2)    <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->ARR14(2)    <---------ZAT2 <-----------HVH21            <---------ANAC58       --------->ANAC46  ------>MYB46(1) ------>LBD16                 <---------ANAC58    ------->GAMYB        --------->ANAC58 ------LBD16           --------->LBD16  <---------ANAC58   --------->LBD16   --------->ZAT2 -----LBD16          <---------LBD16    <---------ANAC58 <---------LBD16     --------->At4g35610 ------>RAV1(2)  <---------ZAT18--------->ALFIN1 <---------ALFIN1      --------->ANAC58--------->ALFIN1   ctgggtcacaatgtttcatcgcacccggcttagggtgtgtttccttgagtaacacccgaaccggaacaacaccaagcctagctcccgaagtgctgatggt  11057600                            <---------GLK1(1)                   <---------ANAC58                   <---------ANAC58                  <-------TEIL                <---------MYB52(1)             <-----------RAV1(2)       <-----------------AGL1   <---------ETT(1)     <---------WRKY18(1)    --------->GLK1(1)     <-----------GT1   <---------ANAC46                                            <-------GAMYB    --------->WRKY38(1)<---------ANAC58                                           <---------ZAT6-----    --------->WRKY12   <---------ANAC58                                           <---------MYB46(3)    ----------->HVH21  ----------->GT1 ----------->RAV1(1)                  <-----------GT1<---------ZAT14   atccatttgaccggctcaggtacttgggtgaaatccgaccccaacaaaacataaaaacatttagcgcttacaaacattttacgactgttagagtttagag  11057700                      <---------YAB1                  <---------ANAC58                       <---------------AGL15                  <---------ANAC58     >>>>>>>ZML2--------->DAG2           <----------DOF2             --------->HSFB2a(2)     <---------TOE2(3)           --------->TOE2(3)    --------->ANAC55(2)      --------------->AGL15        <-----------GT1     <-----------HVH21    ---------->DOF2                          *TSS   <--- ------->CBF    --------->ARR11(3)     <---------HSFB2a(2)   ---------->DOF2<---------At5g28300  <---   caatctctagttactttagttcttgtgatttgtcatgtgttctagagtttaaaaagttagcattaaaggtaaactagttactgctagagatggatgaatt  11057800                                                     <---------ANAC58   <----------DOF2                                   <---------ANAC58 ---------->ID1                                 <----------DOF2 ------ANAC58                                ------->TEIL  <----------DOF2 ------ANAC58      --------->ARR11(3)      <-------TEIL  ---------->ID1                            <-   cttgtctttatagagactagttatcttctatgtttttgctagagatgcatctttttcttgtctttatagagactagttctcttctctgtttttgctagag  11057900         <---------ANAC58                                                                 <---------ANAC58         <---------ANAC58                                                    <---------STY1(2)    <----------DOF2                                                <---------TOE2(3)      <---------ANAC58 ------->TEIL  <----------DOF2                 <-----------GT1    --------->DAG2      <-------GAMYB ------TEIL  ---------->ID1              <---------MYB52(1)      ---------->DOF2     <---------MYB46(3)   atgcatctttttcttgtctttacagagattagttctcttctctgtttttttacaggtttaacaggcataaaggtaaactatctagggcgattgctggagt  11058000                                                                                --------->LBD16                                                                                ------>ZmHOX2a(1)                                                                            <---------ARR14(2)                                                                          --------->HSFC1(2)                                                                          --------->HSFB2a(1)                                     <-----------HVH21                    <---------HSFB2a(1)                                    <------MYB46(1)                       <---------HSFC1(2)                                    <------MYB83                     <-----------RAV1(2)                         <---------------AGL15                  <---------RVE1(1)                         --------------->AGL15                  <---------CCA1(1)                        <-----------------AGL2                 --------->ARR11(3)      <------ZmHOX2a(1) <-----------------AGL3          --------->LBD16 <------ZmHOX2a(1)     ----------->GT1    <-----------------AG <----------DOF2   <---------ARR11(3)----------->GT1  <--   <------ZmHOX2a(1)    <-----------------AGL1      --------->TOE1(2)<---------LBD16      <----------   atttaggaggaaatttgatggtccatacttcatttggaaggtcactcctttgaacatccgagagagatatttcaggagtttcctggtaaaattttcagtt  11058100                   <-----------GT1                                           --------->HSFB2a(1)            --------->ARR11(3)                                               <---------HSFB2a(1)            --------->AHL20(1)                                              --------->ARR14(2)            <---------AHL20(1)                                           <---------ANAC46          --------->AHL20(1)                            <---------AHL20(2)  <---------ARR14(2)          <---------AHL20(1)                          <----------DOF2   <---------LBD16   <------ZmHOX2a(2) ---------GT1   ----------->GT1                   <---------CCA1(2)     <---------At4g35610--------->ATHB12 -GT1    --------->AHL20(2)              --------->At4g35610--------------->AtSPL8       --------->ARR11(3)   ttatctttcaaatatatattgttactcatttactaagtatatgtgctaacttatctcttttatttgtactatgtagcggatgttctattgggatcatggg  11058200                                                                 --------->ANAC58                                                                 --------->ANAC58                                                              --------->WRKY18(1)                                                          <---------YAB1                           <-                                                        --------->ATHB51                           <-                                                        <---------ICU4                             <-            ---------->DOF2                             <--------HAHB4                     <---------         <-------GAMYB                ---------->DOF2   --------->ATHB12      <---------MYB46(3)   --         <-----------HVH21          <---------HSFB2a(2)--------->ICU4        <---------AtMYB61     --        <---------MYB46(3)          <-----------RAV1(2)<---------YAB1        --------->ALFIN1 <------    <---------TOE2(3)       <---------ZAT6          --------->ZAT18       <------ZmHOX2a(1)==========   cttactgaggctgttagagcggggttcgaagtgatagcccagaagcggatgaagggcattattagtcaagctaagaggagtggttcacaacctcttttga  11058300  Previous    Next  AGI:  At5g29026.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 11057790    to: 11059045    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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