Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <----------DOF2                                                                             <---------ARR11(3)                                                                             --------->GLK1(2)                                              <---------MYB52(1)       ----------->RAV1(1)            ------->TEIL                  <---------At5g28300      --------->ANAC58     <---------YAB1                  <---------YAB1                --------->ANAC58       --------->CCA1(2) ---YAB1--------------->AtSPL8      <-----------GT1          <-----------HVH21 <---------ICU4   tacaaatacaattgtacctctataactcatttcaaaattttcattaccgctagcctagtattgtgtcaaacgacaacataatcttttcagagatttgatt  10967900                    ---------->DOF2                --------->AHL20(2)                            <---------O2                <---------AHL20(2)                            <---------ANAC46               --------->AHL20(2)                             <---------ANAC58               <---------ATHB12                               <---------ANAC58           ------>ZmHOX2a(2)                    --------->ARR11(3)     <---------ANAC58                           --------->AHL20(1)     <---------ANAC58                           <---------AHL20(1)                  <-----------GT1     <---------ANAC46                <----------DOF2          --------->O2 ------>ZmHOX2a(1)   tggagaagcgtgatccaattaataaagaactaaatagaactttgttagaaaatattgaagagtcgcgtctccatgtcctctatatttatctgttctcatc  10968000                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       --------->ZAT14                                                       <---------ZAT14                                                       --------->ZAT18                                                       <---------ZAT18                                               --------->WRKY38(1)                   <-----------GT1                    --------->TOE1(3)          --------->WRKY12<----------DOF2   ------>ZmHOX2a(1)                   --------->ZAT6             <---------MYB52(1)   <---------At5g28300              --------->AtMYB61               --------->DOF5.7(2) <-----------GT1====================   ttcgctcattgagacaccataaccctagaaaaacttgaagagaaaaccgtttaccagtgcacaaacttttacagtccaatctcctagtcacagtcccatt  10968100          ------>ZmHOX2a(2)                            <----------DOF2        <---------ARR11(3)                             --------------->AGL15        --------->ARR11(3)                             <---------------AGL15    <------MYB46(1)                                    <---------DAG2    <------MYB83                                      <-----------------AGL3              <---------YAB1   <---------MYB46(3)                               <-----------GT1                      <---------ARR11(3)   <---------DEAR3(1)<<<<<<<<<TBF1               <---------GLK1(1)                  <---------YAB1   <---------DREB2C(2)                   ----------->RAV1(2)                 ------------>CBF ================HOX2a_HOX2a    <-----------GT1 >>>>>>>>>>GATA-1          <---------ZAT6 --------->ARR11(3)   tggagtcggtgatcttatatttcttcttcagatttaactcacaacctgtggatttcactttatatggtatggattagagttcaattctcattatcttagg  10968200                                                                 <---------LBD16                                                         <--------P----------->HVH21                                                --------->ALFIN1<---------At5g28300                                          <---------ANAC58      --------->MYB52(1)                                          <---------ANAC58     <-----------GT1             ----------                                <---------AHL20(1)     <------MYB46(1)            <----------DOF2                                <---------AHL20(2)     ----------->GT1        <---------WOX13(1)                  --------->YAB1--------->AHL20(2)     <------MYB83<---------SPL7<---------ANAC58                 <------ZmHOX2a(2)        <---------ANAC46   <---------WOX13(1)  <---------ANAC58                 <---------ATHB12<---------AHL20(2)*TSS<---------MYB46(3)    <---------ANAC58     <--             ----------------->AGL1      <---------LBD16<-------GAMYB        <---------ANAC58  ------         <------------CBF  ------------>CBF--------->LBD16<-------TEIL      --------->ATHB12 --------   <------------CBF <---------YAB1     <-----------GT1<---------AtMYB61   <---------WOX13(1) <-------   gtttctattgccattgccgatcatgttaacccaattttttttttccgtagatgggggaggttgatttaccggaccgattgattgcttttggagaagaacc  10968300     ---------->DOF2 ->ARR10 ----------->GT1                                  ------->TEIL -------MYB52(1)                                 --------->YAB1 --->MYB46(3)                  ------->TEIL     <---------YAB1            ---------->DOF2          -- ->ARR14(2)           ----------->RAV1(1)     --------->WOX13(1)    <---------At4g35610  <-------TEIL --ARR14(2)          --------->ANAC46        ------>ZmHOX2a(2)      --------->At4g35610 <xxxxxxxxxxxx   gctaggcgaaagggttaatatgcccaccatatgtacttgctatttgatccatcatagatgagccttaggcatctaagaaagaacatgtaggctcatagaa  10968400                                                                                     <xxxxxxxxxxxxxxx                                                               ------>ZmHOX2a(2)    --------->TOE2(3)                                                              <------ZmHOX2a(2)   <---------YAB1                                                              <---------GLK1(1)  --------->KAN4(2)                                         -------->HAHB4       --------->GLK1(1)<---------MYB52(1)                                         <---------ICU4      <---------AGP1   <---------MYB52(1)                                      --------->YAB1         --------->ARR11(3)<---------ARR14(2)                    --------->ZAT18  <---------YAB1      ---------->DOF2   <---------LBD16             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------YAB1    <----------DOF2         ----------->ARR10  --------->YAB1    ------->TEIL  --------->RVE1(1)--------->LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4 <<<<<<<<<MYB98 <---------ANAC58 ------->ZAT18xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------TOE2(3) <---------ANAC58 xxxxxxxxxxsmallRNA(le3)   <---------ATHB12  <---------AtLEC2<---------ARR11(3)--------->ARR14(2)   gggctctggtttagatactaggtgaactaatcaaacttgataataatgcatgtttatgttaaagatctcttggcttctccggttattcttagctataggc  10968500                                                                                     <---------AGP1                                                                                     <---------ARR14(2)                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)                                                                    ------->GAMYB <---------HSFC1(1)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            --------->ZAT6                         --------->MYB46(3)--------->AGP1                         <---------MYB52(1)                        <---------MYB111(2)<------ZmHOX2a(2)                    --------->MYB52(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->MYB46(3)               --------->HSFC1(1)      <-----------------AGL3                  --------->DEAR3(1)               <---------HSFC1(1)     --------->STY1(2)               --------->ANAC58                    --------->HSFB2a(2)   ------>MYB83--------->ARR14(2)               --------->ANAC58      --------->YAB1<---------HSFB2a(2)   ------>MYB46(1)      -------        <---------AtLEC2 --------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR11(3)       <-------TEIL<---------ALFIN1 <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>ZmHOX2a(2) xxxxxxxsmallRNA(si3)    <---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ARR11(3)   atagggagtttcatggcacgcccaccggttactctaaaatcatagtttgagttcgagaacggtgcgataacaacctagctatttctagatctactatcat  10968600                                                             <---------WOX13(1)                         <---------ANAC46           ------>MYB46(1)                  --------->ANAC58                  ------>MYB83                  --------->ANAC58 <---------ARR11(3)      --------->ATHB12<----------DOF2          <---------ARR14(2)       --------->ARR11(3)    <---------ATHB12  <---------DAG2   <---------ANAC58   ----------->TGA1            --------->AtMYB61   <---------ANAC58              <   <---------ANAC46   ----------->HVH21           ------->GAMYB <---------YAB1                 ------   <---------ANAC58 ----------->RAV1(2)          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <------ -->YAB1  --------->ARR14(2)  <---------YAB1     --------->MYB46(3)   <---------ANAC58 <----------DOF2   ctgtttcttgagaataccccaagcctgacgtttttattatcttgtttcacaaccatccaatcgattgctattgcttactttttgtttctctttattttca  10968700                                                    <----------DOF2                                                 <---------ARR11(3)                                      <---------ANAC46                                      <---------ANAC58                                      <---------ANAC55(1)                                      --------->ANAC55(2)                                      <---------ANAC58      <-----------GT1     --------->TOE2(3)   --------->LBD16             --------->At4g35610 ------------MYB.PH3(1)   --------->TOE1(3) ------>ZmHOX2a(2)            --------->ALFIN1  <---------AHL20(2) --->YAB1    --------->TOE2(3)        <---------ANAC55(2)  <---------ARR14(2)            <----------DOF2 ---YAB1    --------->At4g35610    xxxxxxxxxxxxxxxx>smallRNA(s)  <------ZmHOX2a(2)----------->HVH21   taactgttttacttagcttaattcaaaaccttagtctattgcgtgatccgagagctttgtgaattcgatccctaagtgctgcaaatgacctctttatttg  10968800  Previous    Next  AGI:  At5g28930.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 10968251    to: 10972491    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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