Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ANAC58                                                         --------->ANAC58                                                       ---------->DOF2                                                    --------->ANAC58                                                    --------->ANAC58                                                <---------HSFB2a(2)                                --                                                <---------HSFC1(1)                                 <-                                                --------->HSFC1(1)                                 <-                                          <---------ARR14(2)                                      <--                                          <---------ARR11(3)                                      <--                --------->WRKY12          --------->GLK1(2)                                      ----              --------->At4g35610         --------->ARR11(3)                                     <---          --------->ANAC58                <---------ARR14(3)                                     <---          --------->ANAC46                --------->ARR14(3)               --------->SPL7       <----  <---------ICU4----------->HVH21         --------->ARR14(2)             <-----------HVH21    ------- <---------ATHB12                         <-----------ARR10    --------->YAB1     <----------ID1<---- ------GT1--------->ANAC58        <---------AGP1--------->HSFB2a(2)      <---------SPL7      --------   ccactcatttccaagcctctgacctccaaaaccgtagctctgaaaatcttccagaagcaaagcaatcttcaatctcgtccgatggagacaaaaacacggc  10934300                                                                                 <---------MYB52(1)                                                                          --------->At4g35610                                             --------->LBD16              <---------GLK1(1)  <---------HSFB2a(2)                      <---------LBD16                <---------At4g35610 ------->ARR14(2)                       <---------ARR14(2)               <---------AGP1 --------MYB52(1)                       --------->ARR14(2)     <-----------------AGL3             --- --------ARR14(2)                      ------>MYB46(1)         ----------------->AGL3             --- ---------HVH21                        ------>MYB83            ----------------->AGL2  --------->TOE2(3) -----GAMYB                          ------->GAMYB--------->ANAC58       <---------ARR14(2)      <--- ----->MYB55(2)                      --------->AtMYB61        <------ZmHOX2a(2) <---------RAP2.6(3)<- ------MYB46(3)                    --------->ANAC58          <---------ARR14(2) <-------GAMYB   <---- ------DEAR3(2)                  --------->MYB46(3)          --------->ARR14(2)----------->GT1 ------ -----ANAC46                   --------->ANAC46   --------->ANAC58       <---------ARR11(3)    ------ ----->AtMYB77                 <---------ALFIN1   --------->ANAC46       --------->ARR14(2)    <----- -----DEAR3(1)          -------->P --------->ANAC58          --------->AGP1------>ZmHOX2a(2)   ------ ->ANAC46 --------->ALFIN1  --------->ANAC46--------->LBD16 --------->At4g35610<---------ANAC46------   ggttagggaagggtgaaggctcagacaacccctccacaaccaaatcccgcataagccatctcagatccaaaactggatctgccgttaaacatcaaacacg  10934400         ------>MYB83         ------>MYB46(1)        <---------ALFIN1    --------->GLK1(1)    <---------GLK1(1)                                                                          ------   --------->ARR14(2)        --------->LBD16                                            ----------->HVH21   <---------ARR14(2)        ------>NtERF2                                        =================== --------->LBD16    <------NtERF2                                               <---------ARR14(2) ------>MYB52(1)    <---------At4g35610                            ---------->DOF2------>ZmHOX2a(2) ---->TEIL       --------->At4g35610                             --------->ANAC58<------ZmHOX2a(2) ------ALFIN1------>MYB46(1)--------->ANAC46           <---------MYB46(3)       --------->ARR14(2) --------LBD16   --------->LBD16                      ------>ZmHOX2a(2)         <---------ARR11(3) -----ABI4(2)------>MYB83   --------->ANAC58         <------ZmHOX2a(2)          --------->ARR11(3) --->ANAC46  --------->ARR14(2)           <---------GLK1(2)      --------->ANAC58==================== --->ANAC58  <---------ARR14(2)<---------ALFIN1     --------->ARR14(2)        --------->DEAR3(1) ----ANAC55(2)  --------->ANAC46         <---------At4g35610   XXXXXXXXXXXXXXXXXXXX>MIR169D-G  ------ --->ANAC58--------->AtMYB61--------->ANAC58        <---------ARR14(2)     <---------ALFIN1   <------ --->ANAC55(1) <---------LBD16 ----------->RAV1(1)  <---------MYB52(1)    <---------ZAT14     -------   caccggaaacccacctatccgcagcgtcttccgccacaactacagcttctatccgatcggttgagccaagaaagactccaccgatcttcactgacatcca  10934500                                                        --------->ANAC58                                                        --------->ANAC58                                      ---------->DOF2   --------->ANAC46                --------->ETT(1)                                    --------->ANAC58  <---------ALFIN1                  <---------ANAC46                                    --------->ANAC58------>NtERF2            --------->AtMYB61                                <------NtERF2    --------->At4g35610         <---------ALFIN1    <------ZmHOX2a(1)           ------>NtERF2    <---------At4g35610      --------->ANAC58 <---------LBD16               --------->ANAC46 --------->DEAR3(1)        --------->ANAC46 --->YAB1                      --------->ANAC58<------NtERF2              <---------ALFIN1 ==========HOX2a_HOX2a         --------->ANAC58--------->MYB46(3)         --------->ANAC58          < ==========HOX2a_HOX2a        --------->SPL7  ------>NtERF2             --------->AtMYB61 <------NtERF2 --->TOE2(3)                <---------SPL7   <---------ALFIN1   ----------->GT1       <-----------HVH21 -TEIL               --------->HSFC1(2)      --------->DEAR3(1)--------->ANAC46      <-----------RAV1(1) ---------->AGL2     <---------HSFC1(2)     <---------ABI4(2)--------->MYB52(1)--------->ANAC46     <   taaccaggaagacttggaagagaagcctctcgtccgccaagaaagggccaccgctgccacgctaaacggaaaaaccacaccactccaatgtcggagaagt  10934600                                       ------>MYB83                                       -------->P                                     <---------MYB111(1)                                     <---------MYB59                          --------->ARR11(3)                                     <---------MYB46(2)                  ------>ZmHOX2a(2)                                  <------ZmHOX2a(1)                     --------->CCA1(2)                            <---------ARR14(2)                          <------ZmHOX2a(2)                            --------->ARR14(2)                         --------->ARR11(3)             ------>ZmHOX2a(1)--------->TOE2(2)                        <---------ARR14(2)           ----------->RAV1(2)--------->TOE1(2)                        <---------ARR11(3)       <---------ALFIN1     --------->GLK1(2)                   ---------->DOF2   ----------->GT1 ---------ANAC58           <---------CCA1(2)            ----------->GT1<---------AGP1            ---- ---------ANAC58       --------->AtLEC2------>MYB46(1)----------->GT1  --------->AGP1  ---------->DOF2   aagcttgcctcactcctgcatcatcttgcaaatctaggacctaccatgaagaacgaaggtgaaaaacaaagtagatctaagaaattgaaaaaagcttcag  10934700                                                                           --------->At5g28300                                                                          ------->GAMYB                                                                 <---------ICU4                                                            <---------AHL20(2)                                                            --------->AHL20(2)                                                           --------->AHL20(2)     <------------CBF <-                                                      ------------>CBF    ----------->GT1          --                                                      ------>MYB83 --------->AtLEC2     <---------AHL20(2)                            --------->ATHB12          ------>MYB46(1)  --------->MYB52(1)  <---------YAB1                        <------ZmHOX2a(1)    --------->AHL20(2)  --------->YAB1 <---------AHL20(2)<-- ------>DOF2    --------->ZAT6    *TSS     --------->AHL20(2)   <---------ATHB12<---------YAB1    <--   aaagagagagagaaatgaacagtagaggaacgattgtccaagtgaaaaaatataccaacaatttaaatcatgccaacggtatattattgttttatttttg  10934800                                                                       <--------ATHB1                                                                       --------->YAB1                                     <---------LBD16                   <---------ICU4                                    <---------LBD16                    --------->ATHB12                                    <---------ANAC46                  <---------ATHB12              <------------CBF     <---------LBD16                    <---------YAB1      ----------->HVH21         ------->TEIL                          --------->ICU4  <----------DOF2              <---------CCA1(2)             --------->YAB1 --------ARR11(3)          <XXXXXXXXXXXXXXXXXXXXMIR2111B*   <---------YAB1 ------->ARR11(3)          <------------CBF               <----------DOF2 -------GLK1(1)      <---------ARR14(2)              --------->DOF5.7(2)        <-------MYC3 -------CCA1(2)      --------->ARR14(2)           ------->TEIL    <---------YAB1------->MYC3       <-   atatctttgtgacatttattgtagatcgacattgtatctcggggatgtaatgaacgtgaactttgataatcaatgattaaaacgtgtttggaagcatttt  10934900                                                               --------------->AtSPL8                                                    --------->CCA1(2)                                                 ----------->ARR10                                               ------>ZmHOX2a(1)                                         --------->ARR11(3)   ---------->DOF2                                         <---------ARR11(3)  --------->YAB1                                   --------->ANAC58--------->ARR11(1)                        <----------DOF2 --------->RVE1(1)   <<<<<<<<<ARR2                  --------->HSFB2a(2)   --------->CCA1(1)   <---------ATHB12            <---------YAB1         --------->ANAC58--------->ARR11(3)<----------DOF2       <-------TEIL           <-----------GT1         --------->ANAC55(1)    --------->WOX13(1)     >>>>>>>ZML2 ---------DOF2 ------>ZmHOX2a(1)   --------->ANAC46<---------ARR11(3)<---------DAG2       --------->CCA1(2)   tctttaagagtattatccttctcaaactttgggttacacgaaatatctcctaagatatgacaatcaaagtactttatattgttctaggctagatacaaga  10935000                               <---------ARR14(2)                               --------->ARR14(2)                <---------ANAC58                        ------->TEIL                <---------ANAC58--------->ARR14(1)     <---------GLK1(2)                <---------ANAC46--------->GLK1(2)      <---------CCA1(2)              <---------ANAC46 <---------GLK1(2)     --------->LBD16       ---------->DOF2         --------->ARR11(3)    ------>ZmHOX2a(1)                          -----  --------->AHL20(2)           <---------ARR11(3)  <---------ANAC46                         --------- <---------AHL20(2)        ---------->DOF2 <----------DOF2                                <---------- --------->AHL20(2)    --------->ZAT6    <---------ATHB12                        <----------DOF2-----   gaaataaataaaagttttgtgtgtttcactaaagattctctcaatctttagtttcctgaatctctcttgttctctcttgtttactttgtttttaacacaa  10935100                                                                --------->TOE1(3)                                                                --------->YAB1                                            --------------->AtSPL3                                   <---------YAB1               --------->TOE2(3)                ----                                  <---------TOE2(2)             --------------->AGL15            <---                                  ------->TEIL          --------->AHL20(2)                   --------                               <---------ANAC55(2)      --------->YAB1                      <--------                               <---------ANAC46        <---------YAB1                       --------- ---->ANAC58                  <---------TOE2(3) <-------TEIL    <---------------AGL15----------->GT1 >ZAT6                 ----------->GT1      --------------->AtSPL8                  --------->ICU4<-- -GT1----------->GT1 ---------->DOF2      <-----------GT1    <-----------GT1        <---------ATHB12 ---->ANAC58      --------->ETT(1)<---------TOE1(2)  --------->YAB1--------->AHL20(2)<---------MYB46(3)   gaaaacagagttatatatggtcggaaagttataacgtatgtttgaaaccgtacatttataatataaccataaaatgaacaattgcaatggttaaataaat  10935200  Previous    Next  AGI:  At5g28913.1    Description:  transposable element gene Range:  from: 10933827    to: 10934734    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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