Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------AHL20(2)                                                                             <---------ARR11(3)                                                                       ----------->GT1                                                                   <---------ARR11(3)                                                                   --------->AHL20(1)                                                                   --------->AHL20(2)                                                                   <---------AHL20(1)                                                                   <---------AHL20(2)                                                                   --------->ARR11(3)        --------                                                                --------->AHL20(2)        <----------DOF2                                                               <---------AHL20(2)         --------->TOE2(3)                                                               --------->AHL20(2)         --------->TOE1(3)                                                              <---------AHL20(2)  <---------AHL20(2)                                <---------AHL20(2)            --------->AHL20(2)  --------->AHL20(2)    ----------->GT1            --------->YAB1              <---------AHL20(1)<---------AHL20(1) ---AHL20(2)                 --------->AHL20(2)            <---------AHL20(2)--------->ARR11(3) --AHL20(2)            <---------At4g35610                 --------->AHL20(1)--------->AHL20(1) <---- ->AHL20(2)        <----------DOF2                         --------->AHL20(2)--------->AHL20(2) <---- --AHL20(1)        <---------DAG2  <---------YAB1         --------->AHL20(2) <---------AHL20(2)------   ttgaaaacgaaaatagcattactttatctgatataatattcttgaacatgtaagcatatattaaattaatatattgtaatatatttatataactttaata  10869200                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                         --------->AHL20(2)                                                                                         --------->YAB1     <---------ICU4                                                                   --------->YAB1 --------->AHL20(2)                                                                  --------->ZAT6 <---------AHL20(2)                                             <---------YAB1     <-----------GT1 ->YAB1      <------MYB83                                    <<<<<<<<<ARR2       <---------AHL20(2) -----AHL20(2)  <-------TEIL                <---------AHL20(2)--------->YAB1  <---------AHL20(2)----- -----ICU4  <---------TOE1(2)               --------->AHL20(2)--------->TOE2(3)<---------YAB1  <----- --->AHL20(2)<------MYB46(1)               --------->AHL20(2)<<<<<<<<<ARR1  <---------YAB1  <--------   aatataaatattgctaggttcataaatccaaactacatttatgaaattaattctcaaaacacaatcttaattgagcctattattttaacaataatatatt  10869300       <---------ATHB51       --------->ICU4            <---------AHL20(2) -ARR11(3)                      --------->AHL20(2) -AHL20(1)                <-----------GT1 >ARR11(3)              <<<<<<<<<CBP60g >AHL20(1)        --------->ANAC58          <---------ARR11(3) >AHL20(2)        --------->ANAC58          --------->ARR11(3) ---->AHL20(2)   --------->WOX13(1)        <---------CCA1(2)                                    ----- ----AHL20(2)    --------->GLK1(1)<-----------GT1         <----------DOF2                       <---- -AHL20(2)<---------YAB1<<<<<<<<<SARD1   --------->AHL20(2)             ------->TEIL            -----   aattctcaaattatgaaggcaatccaaatttccatttaatcttttaaatcttcatcaactcttttacaaagatgtatatgtgtttgtgagaccagaagaa  10869400                                                                                                    -            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <----------   --------->YAB1                                                                         <---------ARR14(2)  <---------YAB1             <---------ANAC46          --------->At4g35610                --------->GLK1(2) ---->GLK1(2)------->TEIL<---------At4g35610         <---------ZAT18                      --------->ARR14(2) -----ARR14(2)   ---------->DOF2                     --------->ZAT18      ---------->DOF2<---------GLK1(2) ---->ARR14(2)   --------->MYB52(1)         <---------ARR11(3)---------->DOF2    ---------->DOF2  <--   tccgatgataagaagcacctaaaggagagctacttgtgactatgagggtcttaagtgtgctaaacaaagttgaagaacaagcgcaaagagagaatctgtt  10869500                             <---------ZAT14                   <-----------RAV1(1)                 <---------TOE2(3)                         ------------>CBF   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-------GAMYB   <---------ATHB12      <---------HSFB2a(2) -------->AtLEC2--------->MYB52(1) <---------YAB1    --------->At4g35610             --------->HSFB2a(2) -ARR10--------->ALFIN1--------->DAG2         <---------MYB46(3)                   xxxxxxxxxxxxxxxxxx -------------AGL15   ---------->DOF2 <---------YAB1 <---------At4g35610           *TSS <---------GLK1(2)   ccatacaaggtgtttgattaagggaaaagtgtgtagtttgattatagatggttgaagctgtaccaatgttgcaagtgagactatggtccagaaacttggt  10869600                                                                                                  ===                 ------>ZmHOX2a(1)                                                                <--           --------->LBD16                                                                        ===          --------->ANAC46                                                                    -------         <---------LBD16                                                                      <------       --------->ARR14(2)                                                              <---------MYB52(1)       <---------ARR14(2)                                                              --------->DOF5.7(2)     --------->HSFC1(2)                                                               <-------GAMYB     <---------HSFC1(2)                                                               <---------RAP2.6(3)     --------->HSFB2a(1)                                       <-------GAMYB         <---------ANAC46     <---------HSFB2a(1)        <---------ZAT14               <---------MYB46(3)     <---------ANAC58   <------ZmHOX2a(1)            --------->ZAT14    ----------->GT1                   <---------ANAC58 xxxxx>smallRNA(se3)<---------ARR11(3)            --------->ALFIN1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ttagaggagtttccgcatcctagaccttataaactgcaatggctaaatgagagtggagaaatggctgttaccagacaagttcaagtgccgttagccatta  10869700                    --------->ANAC55(2)                ------>ZmHOX2a(2)              --------->AGP1              <---------ARR11(3)              --------->ARR11(3)        ===============HOX2a_HOX2a                                 --------->ATHB12        <------ZmHOX2a(1)                                       <---------ANAC55(2)      <---------TOE2(3)    --------->GLK1(2)                    --------->ANAC55(2) =====================HOX2a_HOX2a                      ---------->DOF2 ----ZmHOX2a(1)<------ZmHOX2a(2)                    ------>ZmHOX2a(2) ======================HOX2a_HOX2a      --------->ANAC58       <-------TEIL -->ICU4==============HOX2a_HOX2a       --------->ANAC58 ----------->GT1 ---MYB52(1)----------->ARR10           --------->ANAC46--------->DAG2                     <---------   ggaagtatgaggatgagatcttatgtgatattctgcccttagaagccagtctgatcggaaagtgatacatgatgggtttaccaatagacatagctttgaa  10869800                                                                          --------->GLK1(1)                                                                          <------ZmHOX2a(2)                                                                         <---------AGP1                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         <---------ARR11(3)                                                                    ---------->DOF2                                 --------->bZIP60(2)          <---------AtLEC2                                 <---------At4g35610    --------->At4g35610       ----------->GT1                                 --------->ANAC58       --------->ZAT2   --------->ARR11(3)                                 --------->ANAC58       <---------At4g35610------>ZmHOX2a(2)    <------ZmHOX2a(1)           ------>NtERF2        ==========================HOX2a_HOX2a -DOF2----------->GT1  ------>NtERF2                 <------ZmHOX2a(2)  <------ZmHOX2a(1)   tttagaggaagaaaaactgttttggcacctatggcacctcatgaagtctacttggatcagcttagcatgaaaaaggatctcaagctgttaaatccaaaac  10869900                                                                                                 ----                                                                                             ------>NtERF2                                   <----------DOF2                                --------->ATERF1(1)                               ------>MYB46(1)                                    --------->DEAR3(2)                             --------->TOE2(3)                                  --------->ARR14(2)             --------->MYB52(1)------>MYB83      ---------->DOF2                <---------ARR14(2) <-            ---------->DOF2  <---------MYB59  <----------DOF2           ------->GAMYB       <-------- --------->LBD16  <---------------AtSPL8    ---------->ID1           <-----------GT1   <----------DOF2   ttccgagagtaaaccaaaggggagtactaaacctaatcttttgtttgtctttaaagaaaacttattgaatataacagccttggaaccggctttgccgagt  10870000                                                 <---------HSFB2a(2)                                                 --------->HSFB2a(2)                                              --------->GLK1(2)                                             --------->GLK1(1)                                          <------ZmHOX2a(1)                                       --------->LBD16                                     <---------HSFB2a(2)                            <---------ARR11(3)--------->ARR14(2)                                    <                  <------ZmHOX2a(1)  --------->HSFB2a(2)       ------>MYB46(1)        ------>MYB83  <    <---------TOE2(3)   --------->YAB1--------->LBD16          ------>MYB83           ------>MYB46(1) ------->GT1   <---------AtLEC2     <---------LBD16         --------->MYB46(3)     --------->ANAC58 < --------ZAT6 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -ANAC46  <----------DOF2   --------->ARR11(3)<---------ARR14(2)--------->MYB46(3) --------->ANAC58 -   agtattaagtttcttttgcaggactatcaagatgtttttcccgaggaaaatccagaaggtttaccacccattagaggcattgagcaccaaattgacttcg  10870100  Previous    Next  AGI:  At5g28845.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 7.0e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 10869583    to: 10872685    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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