Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------AHL20(2)        --------->YAB1<---------AHL20(2)                          --------->AHL20(2)      --------->AHL20(2)       --------->AHL20(2)--------->AHL20(2)      <---------AHL20(2)<---------AHL20(2)       <---------AHL20(2)<---------AHL20(2)     --------->AHL20(2)--------->AHL20(2)   --------->YAB1       <---------AHL20(1)   <---------AHL20(2)   --------->YAB1 -->HAHB4              --------->YAB1       --------->AHL20(2) ------>MYB83 ---ATHB1    --------->AHL20(2)     <---------AHL20(1)       --------->TOE2(3) --->YAB1    <---------AHL20(2)     <---------AHL20(2)       <---------MYB59 ----ICU4   --------->AHL20(2)      --------->AHL20(1)    <-----------GT1 ---ATHB51  <---------AHL20(1)      --------->AHL20(2) <---------ICU4       <-----------GT1 -->ICU4    <---------AHL20(2)     --------->AHL20(2)--------->AHL20(2) --------->TOE2(3)  <------ZmHOX2a(2) ---YAB1<---------AHL20(2)--------->AHL20(1)<---------AHL20(2) ------>MYB46(1)         --------->HSFB2a(2) >YAB1--------->YAB1 --------->AHL20(2)  --------->YAB1--------->YAB1  ----------->GT1 <---------HSFB2a(2)   ttctataattttaatttaatttttaaaataatttgaattttatttataaatttaaaataataacctaattaaaacgtttaacaattcttctcgatcagtc  10780400                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC55(2)          <-----------HVH21                                                              ----------->GT1      --------->MYB52(1)                                                                 <---------ANAC58     ------->GAMYB                                                        --------->YAB1 <---------ANAC46    <---------MYB55(2)                                            ------>MYB83    --------->At5g28300    --------->MYB46(3)           <-----------GT1                  ------>MYB46(1)----------->GT1<----  <<<<<<<<<GT-1 --------->AHL20(2)  <----------DOF2        --------->ANAC46     ----------->GT1------  <-----------GT1              <-----------GT1           --------->ZAT6 <-----------HVH21<---------ANAC58   ttattaaccaccagtcaaataaaaacaactaattttctcttttcttctcaattcttcttacactcaccaatctctatcagagagggtaatttcgtaatat  10780500    ----------->TBP                                                                       <------NtERF2    <---------AHL20(2)                                                                   --------->LBD16    --------->AHL20(2)                                                                  --------->DEAR3(1) -------->AHL20(2)                                                   --------->TOE1(3)  <---------ANAC46 -------->YAB1                                                       ------->GAMYB   --------->ANAC58 --------YAB1                                                        --------->TOE2(3) <---------LBD16 ------>AHL20(1)                                                   -------->P        --------->ANAC58 ------>AHL20(2)                                                   ------>MYB83      --------->ANAC46 -------AHL20(2)             --------->TOE2(3)                     ------>MYB46(1) <---------DOF5.7(2) -------AHL20(1)             --------->TOE1(3)                    <---------ALFIN1<-------TEIL  <---- ----->YAB1                -------->P          <---------ANAC58  <---------ALFIN1<-----------HVH21 -----YAB1       <-----------GT1               <---------ANAC58--------->ANAC46  --------->DOF5.7(2) --->AHL20(2)    --------->YAB1         <---------ATHB12  <----------DOF2       --------->TOE1(3)   tataatataaataaacttataacaacacttacctcaaatcaaatcactatcgtgtcttctcttttccccaaccctaaaaaaacgttcacgccggagaaac  10780600                                       --------->LBD16                                       ------>NtERF2                                       <---------ATERF1(1)                                      <---------ATERF1(2)                                      --------->DEAR3(1)                                      --------->ATERF1(2)                                      <---------DEAR3(1)                                     <---------LBD16                                     --------->ATERF1(1)                                 --------->ARR14(2)                                 <---------ARR14(2)                                                 -                      <---------ARR14(2)                                                          <--        --------->DEAR3(1)      <---------CCA1(2)                   ---------->DOF2      <---------ARR14(2)      <---------At5g28300  <-----------GT1              <---------GLK1(2)   <---------YAB1   ------>ZmHOX2a(1)   <-----------HVH21  <---------MYB52(1)  <---------MYB46(3)    <---------TOE2(2)    <---------ATHB12 -----MYB52(2)        --------->ARR14(2)<------NtERF2<---------ALFIN1   <---------GLK1(2)--------->ARR14(2)   aaacccttcaccgtcttcttcgccgttcttcaccatatcgccggcgattagtccctcacattctcacaggtaaagcttctcattctaatcaaatccttct  10780700                                                                                                    -                                                                                                    =                                                                 ------>ZmHOX2a(2)          =========                                                                <------ZmHOX2a(2)           =========            <-------TEIL                                       --------->ARR11(3)           ------>ZmHOX2a(2)           --------->ARR14(1)                                  <---------ARR11(3)          ==========          <---------GLK1(2)                    <---------ANAC58<---------AGP1              --------->GLK1(1)          --------->ARR14(2)                   <---------ANAC58--------->AGP1              <------ZmHOX2a(2)          --------->ARR11(1)               ============================HOX2a_HOX2a         ==========          <---------ARR14(2)       --------->TOE2(3)<-----------GT1                       --------->ARR11(3)        ----------->ARR10<---------ARR11(3)<----------DOF2  <---------HSFB2a(2)           <---------AGP1 -------->ANAC46       --------->ANAC58    =============================HOX2a_HOX2a       <---------ARR11(3) -------ALFIN1         --------->ANAC58    ------>ZmHOX2a(1)--------->HSFB2a(2)  --------->GLK1(1)  =   ccactcccttcagattcgcttaaacaagctctcaaatccctaatccttttcgtttctccattctagatctaaactatatggcgatttccaaagatctcta  10780800                 --------------->AGL15             ===================HOX2a_HOX2a             ------>ZmHOX2a(2)            <------ZmHOX2a(2)            ====================HOX2a_HOX2a           --------->ARR11(3)           --------->ARR14(2)           <---------ARR11(3)           --------->GLK1(2)           <-----------ARR10                                               ------>MYB46(1)           <---------ARR14(2)                                              ------>MYB83          <------ZmHOX2a(1)                                              <---------MYB111(1) ----->ZmHOX2a(1)<---------------AGL15                                   <---------MYB59  --------->ARR14(2) ===================HOX2a_HOX2a                                 <---------ANAC46          ------->TEIL ================HOX2a_HOX2a                                 <---------AtMYB61       --------->At4g35610 ======HOX2a_HOX2a           <---------ARR11(3)              <-----------RAV1(1)  ---------->DOF2 ================HOX2a_HOX2a --------->ARR11(3)       ---------->DOF2   <---------ANAC55(2) ======HOX2a_HOX2a       <------ZmHOX2a(1)        --------->At4g35610   --------->ANAC55(2)     <---- ==================HOX2a_HOX2a                    <---------At4g35610<---------ARR14(2)  <---------GLK1(2)   tccttctcaagaggatctactctatgaggaagagcttcttcgaaaccaattcagcttaaagctatggtggagatacctaatcgcaaaagctgaatctcct  10780900                                                                        --------->TOE2(3)                                                                       <---------YAB1                                                                     <---------CCA1(2)                                                                 --------->ANAC58                                            --------->HSFB2a(2)  --------->ANAC58                                            <---------HSFB2a(2) <---------ZAT18                    --------->ANAC46        --------->LBD16     --------->SPL7      --------->ANAC58                     <---------LBD16  <---------------AtSPL8      --------->ANAC58           ---------->DOF2          <-----------RAV1(1)                 <------ ------DOF2--------->REM1(1) <----------DOF2------>ZmHOX2a(1) <---------SPL7--------->HSFB2a(2)   <--   tttaagaaacgcttcatcatctacgagagagctttaaaagcacttcctggaagctataaactgtggtacgcttatcttagagaacgactcgatatcgtta  10781000                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----         <---------MYB52(1)                                                                  --------     <---------ANAC58       --------->GLK1(2)                                      --------->ARR14(2)     <---------ANAC58      <---------GLK1(2)                 <-----------GT1       <---------ARR14(2)     <---------ANAC46    <---------YAB1               --------->ARR11(3)          <------ZmHOX2a(1) ---MYB52(1)          <---------SPL7       <----------DOF2----------->GT1       <---------TOE1(2) ----ZmHOX2a(1)     --------->ANAC46  --------->YAB1  <---------ARR11(3) --------->At4g35610 <-------   ggaatttgcctgttactcatccacagtacgattctctcaacaatacttttgagagaggtcttgttactatgcataagatgcctaggatttgggttatgta  10781100                                                           <----------DOF2                                                       --------->ZAT14                                                       <---------ZAT18                                                     <---------SPL7                                                    <---------ANAC58                                                --------->ETT(2) ---->ARR14(2)                                  <---------ETT(2) -----ARR14(2)                              --------->HSFC1(2)                             <---------ARR14(2) -->TEIL                                    <---------HSFC1(2)            <---------MYB52(1)      --- ---->ARR11(3)                              --------->HSFB2a(1)   <----------DOF2          --------->ARR14(2) ----CCA1(2)                           <------NtERF2<---------ANAC58<-----------GT1  --------->ATHB12 ->ANAC55(2)            --------->ATHB12    <---------HSFB2a(1)   <---------DAG2    <---------YAB1<-- --ANAC55(2)   <-------TEIL          <---------DEAR3(1)--------->SPL7    <-----------HVH21<------ZmHOX2a(1)   tcttcagactcttacggttcagcaattgattactcggactcggcgaactttcgaccgtgcgctttgtgctttacctgttactcaacatgataggatttgg  10781200      <---------ANAC58      <---------ANAC58    <-----------ARR10                                                                           <----    ------->TEIL                                                                   ------>ZmHOX2a(1)    --------->ARR14(2)                                                           ------>ZmHOX2a(2)    <---------ARR11(1)                                             --------->ARR11(3)    --------->ICU4    <---------ARR14(2)                       <---------ZAT14       <---------ARR11(3)  --------->YAB1   <---------ARR14(1)              ------>ZmHOX2a(1)            ----------->GT1  ====================   <---------CCA1(2)              <---------YAB1           --------->HSFB2a(2)  <---------YAB1<------ ------>ARR14(2)               --------->GLK1(1)           <---------HSFB2a(2) <---------ARR11(3) -------ARR14(2)              <---------GLK1(1)  --------------------->WRI1    --------->ARR11(3)----   gaaccgtatcttgtgtttgtgagtcaaaatgggattcctattgagacttcacttagggtttatagaaggtatcttatgtatgatcctagtcatattgagg  10781300  Previous    Next  AGI:  At5g28740.1    Description:  transcription-coupled DNA repair protein-related. similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63613.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16590.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65069.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 10780778    to: 10783915    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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