Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                       <---------ANAC58                            <x                                                       <---------ANAC58                          ----                                                       <---------ANAC46                          <---                                                   <---------ZAT18                               ----                                                  <---------ANAC58                               <---                                                  <---------ANAC46                               <---               <---------AHL20(2)           --------->HSFB2a(2)  ---------->DOF2                <----           --------->AHL20(2)               <---------HSFB2a(2) ------>ZmHOX2a(1)      <---------At4g35610   <---------ICU4                      <---------At4g35610 ---------->ARF1             --------->At4g35610   --------->YAB1                <------NtERF2    <---------ANAC58                    <xxxxxxxxxxxxxx  <---------ATHB12   <---------ANAC46  --------->At4g35610 ---------->ID1----------->GT1       <xxxxx   tacaatcatcccataaatttatggagtttaggggcagagtcttctcccagtagcgtgccttgtctcctaaagagaagggaaatagtctgagcttaaacat  10744000         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------bZIP60(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->bZIP60(1)     ----------->HVH21    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ZAT2         ------>ZmHOX2a(2) ----->ARR11(3)                              <---------At4g35610    xxxxxxxxxxxxxxxx>smallRNA(i) ------ARR11(3)              ----------->RAV1(1)    --------->ICU4 <------ZmHOX2a(2) ----->ARR14(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ARR11(3) ------ARR14(2)   ------>ZmHOX2a(2)          --------->At4g35610  <---------ARR14(2) ------ARR11(1) <---------ARR11(3)        ---------->DOF2         --------->ARR11(3)                < -----CCA1(2)   --------->ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58  <-- xxxxxxxxxsmallRNA(fl3) --------->SPL7   --------->YAB1           --------->ARR14(2)              <-- xxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58      <--   atcttcagtgacaccattgatcttggtaaggccacagagcctatcaaagctgtcaagatggtccaagggatcctccataggcaaaccatgaaatgtgttt  10744100                                                                                           <xxxxxxxxx                                                                                       <---------ANAC58     --------->YAB1                                        --------->ZAT6              <---------ANAC58    <------ZmHOX2a(2)                                 <---------MYB46(3)          <---------ICU4 ---------TOE1(2)                    <---------MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------ANAC58                  ---------->DOF2      <---------AtMYB61           <---------YAB1 -------ANAC46               ------>ZmHOX2a(2)<---------ZAT14                    --------->ICU4  <xxx -------ANAC58             <---------ARR11(3) --------->ZAT14       <---------MYB52(1) <---------ANAC46   ccttggatcatgaagatgagaccactcttgatctcaaagttgttgttctgaactggtggtagcactatcccttgtttttggtgatgattccttggggcat  10744200                   <---------WOX13(1)                   <--------P              <---------ANAC58                                                      -----------------              <---------ANAC46                                                      <----------DOF2              <---------ANAC58                                                     <xxxxxxxxxxxxxxxxx         <---------ATHB12                                                    --------->ZAT2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         ----------->RAV1(2)  --------->At4g35610  <<<<<<<<<<WRKY26                                      --------->At4g35610 ---- --------->ANAC58 <-------GAMYB     <------MYB83                             <---------ZAT2      ---- --------->ANAC58<---------MYB46(3) <------MYB46(1)                          <---------At4g35610 ---- xxxxxxxxxxxxxxsmallRNA(i2)        <---------MYB46(3)                        <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ALFIN1                   ------>ZmHOX2a(2) <---------At4g35610   caccagcaccaatgtttcttggttgatcaactataggtgggtcttgaacatcaacttgtctgttctattgatccatagcagctggtctttgctgatcaca  10744300           <---------AtMYB61         <----------DOF2                                                                           *TSS        <---------ANAC58                                                                       ------        <---------ANAC58                                                                     <-------    <----------DOF2                                                                          <-------   --------->TOE2(3)                                                                         <------- ------>TaNAC69(2)                                                                        <xxxxxxxxxx xxxxsmallRNA(le3)      <---------MYB52(2)         <----------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->ANAC58    <---------ANAC58                  --------------->AGL15         <xxxxxxxxxxxxxxxxxxx ----->ANAC58    <---------ANAC58      <-----------HVH21           --------->ALFIN1  ------>ZmHOX2a(2) ----->ANAC46    <---------ANAC46  --------->GLK1(2)      ----------->GT1      <xxxxxxxxxxxxxxxxsmallRNA(i)   ggctacctttgctttggtttcttgtaactcacgagctattctgtcaattctgtctttgaaaggtaataggtgtgcaaaacctttggatcgagtttgcatg  10744400                                                                                    <---------ICU4                                                                                    --------->AHL20(2)                                                                              --------->YAB1  --------->ICU4                <---------At4g35610                           ------>ZmHOX2a(2) --->AtLEC2                     --------->At4g35610                         --------->ARR11(3)<------ --AtLEC2         ----------->RAV1(1)                                       <---------ARR11(3)------- --ANAC58   <---------------AtSPL3     --------->ICU4                 <---------ARR11(3)     <------- --ANAC58   --------------->AtSPL8   ---------->DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)-------- xxxxxxxxxxxxsmallRNA(i2)   --------->ANAC58       <-----------GT1    --------->ARR11(3)     <------- xsmallRNA(le3) ------->TEIL--------->ANAC58    ----------->GT1   ---------->DOF2   <---------AHL20(2)   cacaaagattagtacatgtaccacaaaaacaagcagatgaaaagatgagttagtaacttgataaatgtaaaagaacttgatcttaattttttctgatatc  10744500                                 ------>NtERF2                                    <---------ANAC58     <-----------GT1            --------->ANAC46                                  <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         <---------ANAC58  ----------->GT1               --------->ANAC58                                <---------ANAC46 ---ARR11(3)                  ------->GAMYB                                     <---------ANAC58 -->ARR11(3)                 --------->DEAR3(1)                                --------->ALFIN1 --CCA1(2)                   --------->MYB46(3)  <------MYB46(1)               <---------AtMYB61 ->GLK1(1)        <---------ATHB12               <------MYB83                 <---------ZAT14 --GLK1(1)   ----------->RAV1(1)--------->ANAC58--------->MYB59              --------->ALFIN1   ttgaatgtaacaatgcaacaatgaattggcaacgacgccaaattgataagtaggtttttaggcctacttatgtgttgaagtgtggtgtgttcagttcaat  10744600                                                                   <---------ATHB12                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              --------->ANAC58                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              --------->ANAC58                                                            <---------ANAC58                                                <---------ZAT18    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <---------ZAT14   --------->ANAC58                                                --------->ZAT14   --------->ANAC58                                                --------->ZAT18<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------MYB52(2)                                        --------->WOX13(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxx                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->ANAC58                                     <xxxxxxxxxxxxxxxxsmallRNA(i)--------->WOX13(1)--------->ANAC46                                     <-----------HVH21      <---------ANAC58--------->ZAT14     -----                                    --------->ALFIN1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)-----        --------->TOE1(3)         <---------ANAC58    <---------YAB1        <---------ZAT14    xxxxxx        --------->TOE2(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ZAT18  --------       <---------ICU4             <---------ANAC58    <---------MYB52(1)<---------ARR11(3)  <xxxxxxxx --------->TOE1(3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->YAB1 --------->ANAC58 --------->TOE2(3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ttcccttaaacattaacatgtcgatgcagttatagggggtgtcaatccagtccactgttattgctagcaatcaagatgtgtacagaagcaactaagtcaa  10744700                 <------MYB46(1)                 --------->MYB52(2)                 <------MYB83                 <---------MYB46(3)                <---------AtMYB61               <--------P              <-------GAMYB             <---------MYB46(3)          -------->HAHB4          <---------ICU4               --------->WRKY18(1)          --------->YAB1              <--------ZAP1         <---------YAB1             <---------TOE1(2)         --------->ICU4            ------>ZmHOX2a(1)       --------->YAB1              =================HOX2a_HOX2a        ----------->HVH21      <---------YAB1              --------->TOE1(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------AHL20(2)         <<<<<<<<<ARR2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->YAB1              <<<<<<<<<ARR1 --------->ATHB12    -------->P  <---------GLK1(2)    --------->HSFB2a(2)  <---------ARR11(3)    ------>MYB46(1)                 --- xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->TOE2(2)<XXXXXXXXXXXXXXXXXXXXXMIR833-5P              ----- ---->ANAC58 --------->MYB55(2) <<<<<<<<<ARR1<------ZmHOX2a(2)    ------>MYB83 --------->AHL20(2)<--- ---->ANAC58 --------->ATHB12--------->MYB46(3)   <---------MYB46(3) <---------ANAC55(2)        ----- xxxxxxxxxxxxxxxxx>smallRNA(si3)<<<<<<<<<ARR2<---------YAB1      ----------->RAV1(1)           ------ ->WRKY18(1)<---------YAB1 <-----------GT1  --------->ARR11(3) --------->MYB46(3)    xxxxxxxxxxxxxxxx xxxxxxxxsmallRNA(s)   <---------HSFB2a(2)--------->ICU4<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   xxxxxxxxx   gccagattataatgatggttggtttctagtaacaatcctaggtcaagatcattgggtcgagtagaaccaacatgtgacaaatttaagaactaaaatgcaa  10744800          --------->AHL20(2)          <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ----------->GT1                      <---------------------WRI1   --------->At4g35610                 --------->LBD16                                        ------- <-----------RAV1(2)                 <-----------RAV1(2)                                    <-------- ------>YAB1                    --------->ZAT18                                           --------->ATHB12 ---->ANAC58                    --------->ZAT14                                          xxxxxxxxxxxx ------ATHB12      ----------->GT1  <---------ATHB12                                     <-------TEIL ---->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <------ZmHOX2a(1) --->WOX13(1)  --------->MYB52(1) --------->WOX13(1)                            <---------TOE2(3) xxxxxxx>smallRNA(si3)          <---------ZAT18        <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxx xxxxxxx>smallRNA(i)       ---------->DOF2            --------->AHL20(2)      ------>ZmHOX2a(1)   tcaacaggtgaataaaataacaggtaaataaaagtgcaatcaggggatgaatacaaataaatctaagaagaatagaagtcctaaggatggattcattgat  10744900  Previous    Next  AGI:  At5g28696.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 8.2e-184 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 10738457    to: 10744399    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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