Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ------>ZmHOX2a(2)                     ================HOX2a_HOX2a                     <------ZmHOX2a(2)                     --------->At4g35610                    --------->ARR14(2)                    <---------ARR11(3)                    <---------ARR14(2)                    --------->GLK1(2)                --------->LBD16                <---------LBD16               <---------LBD16               <---------ANAC46               <---------ANAC58            <---------ARR14(2)         <--------P --------->ARR11(3)       <------MYB46(1)===============HOX2a_HOX2a       <------MYB83--------->GLK1(1)      --------->MYB111(1)      --------->MYB46(2)      <---------AtMYB61      --------->MYB111(2)                     <---------YAB1      --------->MYB59<---------At4g35610    <---------ICU4      <---------MYB46(3)                   --------->ICU4 <---------TOE2(3) <---------GLK1(1)       <---------YAB1                            --------->ZAT6 ---->ARR14(2) <---------ANAC58        <-----------TGA1                           --------->REM1(1) -----ARR14(2)<---------LBD16         --------->YAB1                          <---------At4g35610 -ZmHOX2a(1)--------->ARR14(2) <---------TOE1(2)                              --------->At4g35610 --TOE2(3)<---------MYB46(3)  ------>ZmHOX2a(1)                              ------->TEIL   actgaggtttggtagttccggggatctgtctcctatgtaatcgtcatgatgagtccatggaccatttgttttttgaatgcagcttcaactctagcatttg  10612600                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                               <---------ANAC58                      --------->YAB1                                   --------->ANAC46                           <------ZmHOX2a(1)            <---------HSFB2a(2)  <---------ALFIN1                          <---------HSFB2a(2)            --------->HSFB2a(2) <---------MYB55(2)      ------>ZmHOX2a(1)  --------->HSFB2a(2)    <-----------HVH21           --------->MYB46(3) ---------->ID1        <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ANAC46  <---------GLK1(2)         <---------ANAC58       <---------At4g35610    --------   --------->bZIP60(2)    <-----------GT1      <---------ANAC46       --------->At4g35610  <---------   gagacacttcacctctagagcgagattgtctccatccacccagtttatggcttgtctccttcggcttcagtctgcttcgaggaacaagaatatttgcctc  10612700                                             --------->ANAC58                                      <-                                             --------->ANAC46                                    <---                                             --------->ANAC58                                    <---                          <---------ZAT18  <---------DOF5.7(2)                                <------                        --------------->AtSPL8                                              <--------                 --------->ANAC58        --------->DOF5.7(2)            --------->YAB1      ---------                 ------>MYB46(1)       <---------ANAC46                <---------ATHB12     <--------HAHB4                 --------->ANAC46      <---------ANAC58            ----------------->AGL3  <---------YAB1              --------->ANAC46--------->TOE2(3)   <---------HSFB2a(1)  <---------ATHB51    --------->ICU4    ------->TEIL ------>MYB83<-----------------AGL1  <-------TEIL ------>NtERF2        ------>ZmHOX2a(1) --------->AGL1  --------->ANAC58      <---------ANAC58           --------->LBD16<---------At4g35610 --GT1      --------->ANAC46------->TEIL ----------->HVH21       --------->ANAC46--------->At4g35610   attgtgaatctcatacaccaagcctctgtgtacctcatttggcgtgaacgaaacattcgtcttcattccgccaattataggtgtgcttcctccattatta  10612800                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  ------>ZmHOX2a(1)                                  <----------DOF2                                 --------->TOE2(3)                                ------>ZmHOX2a(2)                  <----------DOF2                               <------ZmHOX2a(2)                   <---------DAG2 -----ZmHOX2a(1)              <---------GLK1(2)                 ------>ZmHOX2a(1) ------TOE1(3)                --------->ARR11(3)              ----------->RAV1(2)  <---------REM1(2) ------TOE2(3)                --------->ARR14(2)          ------->TEIL             <---------ZAT14<-- ---YAB1                      <---------ARR11(3)       --------->ALFIN1 --------->ZAT6           <xxx -ICU4                        --------->AGP1         <---------ANAC46   <-----------GT1         <xxxx >ATHB51                      <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------ALFIN1   aggaaataaaactcaccatcaaggcaaaactagatcctttatctagggaacaacgatgtgtacctcctgctttatcacttcttgctacacagttctccct  10612900                                                         <---------ANAC58                       <---------DEAR3(2)                <---------ANAC46                    <---------ANAC58                     <---------ANAC58                         <xx                    <---------ANAC46                    <------NtERF2                             <xx                    <---------ANAC58                 ------->PIF5  --------->LBD16               <---               <-----------RAV1(1)                   <-------PIF5<---------LBD16                 ----            <---------DAG2                          <---------ZAT2--------->HSFB2a(2)            <---          ------>MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------MYB83                         ----          ------>MYB46(1)                           --------->At4g35610                         -----         <---------ALFIN1--------->ARR14(2)         <---------At4g35610                  <---------MYB52(1) --------DOF2<----------DOF2                        --------->ZAT2<---------HSFB2a(2)   --------->ZAT2 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <----------DOF2<------MYB46(1)             <---------ZAT2 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1  <-----------RAV1(2)               ------>ZmHOX2a(1)   ctttagtaaacccacctttgtggctcggttccatttttcttctccctcttttgcaggtggcttggtttctggagaagttttgtttcctccagttgggcat  10613000                                                               <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <-----------GT1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->ARR14(2) ----MYC3                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->MYC3                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->TOE2(3) ----MYC2                  --------->ATHB12  --------------------->WRI1         <---------TOE2(3) --->MYC2                ------->TEIL        <----------DOF2   --------->ARR14(2) --------->YAB1 ---->ALFIN1     <-----------GT1        ------>NtERF2 <---------ARR14(2)     <---------AHL20(2)  ----   gtggccattttaagtgtttctaccatgtatgtttgggcatgaggcctctttaagcgtttctaccatatatgttttatgttttaatgaaaacttaaaaaaa  10613100                                                                      --------->ATHB51                                                                  --------->AHL20(2)               <-                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------AHL20(2)           ==                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)               <---------YAB1                 ----             xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------AHL20(2)             <---           --------->YAB1    ----------->GT1                     --------->AHL20(2)          --------          <---------YAB1     ------->GAMYB                     <---------YAB1 --------->YAB1 <-------         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  <---------AHL20(2)<---------YAB1 <-----      <-----------GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------AHL20(2)      --------->AHL20(2)   <---------ANAC55(2)    --------->MYB52(1)                <---------YAB1<---------AHL20(2)<--------   --------->ANAC55(2) --------->TOE2(3)               --------->ZAT6 <---------ICU4     --------->ATHB51   ----------->GT1--------->At4g35610<-------TEIL   <---------CCA1(2) --------->AHL20(2)--------->ICU4 ----->AHL20(2)---------->DOF2--------->At5g28300  <---------MYB52(1)--------->ICU4     <---------YAB1   aaaatatgtaacatcataagagcagcctcaacggtaaaatacattctcagtcccttatctctattattttaattatttaagtataatttcattatttatt  10613200                                  <---------YAB1                                 --------->AHL20(1)                                 <---------AHL20(1)                                 <---------AHL20(2)                                --------->YAB1       --------->ALFIN1                                --------->AHL20(2) <---------bZIP60(2)                               <---------ATHB12    <---------ANAC46                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           ------------>CBF       <---------AtMYB61                             <xxxx                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ANAC58    <xxxxxxx                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ANAC58    <xxxxxxx                         >>>>>>>>>>WRKY38      <-----------HVH21       ---------->DOF2 <xxxxxxxxxxxxx                         >>>>>>>>>>WRKY26     ====================================bZIP_DOF   <xxxxxxx                         >>>>>>>>>>WRKY43     <---------TGA1a       ----------->GT1   <xxxxxxxxxxxxxx <---------AHL20(2)      <-----------GT1      --------->TGA1a     <---------ZAT14     xxxxxxxxxxxxxxx --------------AGL15    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ZAT18    <---------YAB1 ============================================================================MADS_MADS<xxxxxxxxxxxxxx ----->AHL20(2)       <------------CBF        ====================================bZIP_DOF<xxxxxxxxxx ------AHL20(2)     --------->AHL20(1)       <-------MYC3         --------->ZAT14--------->TOE2(3)  x ->AHL20(2)         <---------AHL20(2)       ------->MYC3    ======================================== --AHL20(2)         --------->AHL20(2)    <---------ALFIN1   --------------->AGL15 xxxxxxxxxxxxxxxx>smallRNA(i) ------TBP         <---------AHL20(2)    --------->ANAC46--------->GLK1(1)    <xxxxxxxxxxxxxxxxxxxxxx -AHL20(2)         --------->AHL20(2)  <-----------GT1   <---------GLK1(1)  ---------->DOF2 <------ZmHOX2a(1)   tatatttttagttacagataaaaaaattgaccaattatatttcaccacatgtgaggtggatttctcagtacagtaaagcaaagccttattcttaggaccc  10613300                                                                                             xxxxxxxx                                                                                           <---------                                                                                          <xxxxxxxxxx                                                                                         --------->At4g35610                                                                                         <---------At4g35610                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                 --------------->AGL15                 <---------DEAR3(1)                                                 <---------------AGL15                <---------At4g35610                                                 <----------DOF2                      xxxxxxxxxxxxxxx                                                 ====================================================                                           <---------ICU4                            xxxxxxxxxxxxxxxx                                           <--------HAHB4                           xxxxxxxxxxxxxxxxx                                           --------->YAB1                           <------NtERF2            ------>ZmHOX2a(1)           --------->YAB1                              <xxxxxxxxxxxxxxxx       <----------DOF2                  <---------ICU4                             <---------MYB46(3) xxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->ICU4                              --------->ABI4(2) xxxxxxxxxxxxxxxsmallRNA(fl3)       --------->AHL20(2)                           <---------MYB52(1) xxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)                           xxxxxxxxxxxxxxxxxxxx xxxxxxxxxsmallRNA(le3)             <---------AHL20(1)                         <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(se3)   <---------AHL20(2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(si3)         --------->AHL20(2)                       <---------At4g35610xxxxxxxxx xxxxxxx>smallRNA(le3)     <----------DOF2<---------YAB1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(le3)    <---------DAG2<-----------GT1              ---------->DOF2<---------PCF2 xxxxxxxxxxxxsmallRNA(si3) ======================================MADS_MADS   --------->MYB52(1)     x xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(1)              <---------YAB1--------->ALFIN1xxx ==========================================MADS_MADS               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(le3)            --------------->AGL15 <---------DAG2<-----------------------TaNAC69(2)<---   tatttctctctttcctcttctctctcttacttttttaattaattatcattacttttttttgaagagacttattaaagctcaccggtggggctgctctaag  10613400   <<<<<<<<<AtLHY   <<<<<<<<<AtCCA1 xxxxxxxx>smallRNA(i) -DOF2       <---------MYB46(3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(le3) xx>smallRNA(i) xxxxxxxx>smallRNA(fl3) ===============================================MADS_MADS                --------->HSFC1(2) xxxxxxx>smallRNA(le3)                                                   --------->HSFB2a(1) xx>smallRNA(si3)                                                        <---------HSFB2a(1)     ---- xxxxxxsmallRNA(le3)                                                     <---------HSFC1(2)      <--- xxx>smallRNA(le3)                                                    <------ZmHOX2a(1)          <--- xsmallRNA(le3)                                                   <---------MYB52(1)             ---- xxxxxxxxxxxxx>smallRNA(si3)    --------------->AGL15           --------->ANAC58                ----- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ---------->DOF2     --------->ANAC46                <---- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)          --------->ANAC58            --------- ---ZmHOX2a(1)                 ----------------->AGL3         <-----------GT1         ---------->DOF2   gacgagttagcctagtggttaagcctcttagttaccaaaaatataagaaagtcacatatacaattcacgttaggaagggtctgttcttcaaagaaaaaat  10613500  Previous    Next  AGI:  At5g28615.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04650.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706) Range:  from: 10611975    to: 10612505    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g28620.1    Description:  protein kinase C-related Range:  from: 10612533    to: 10613008    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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