Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ANAC58                                                                     ---             <---------ANAC58                                                                --------         <----------DOF2                                                                     -------- ----->ARR11(3)                                                                             <-------- ------ARR11(3)                                                                             --------- ----->AHL20(2)                               ------->MYC3                                  <-------- ----->AHL20(1)                               <-------MYC3                                  --------- ------AHL20(2)                      <---------YAB1                             --------->GLK1(1)---- ------AHL20(1)                     <---------ARR11(3)              --------->MYB59       <---------- ---->AHL20(2)<----------DOF2       --------->ARR11(3)      ----------->GT1     <---------GLK1(1)<---   atattagacttctttgctttgttttgttttttgagaaatatcattccatatgcatagaaaacttgttatttaggtcccttcgaaatccattgttacctga  10597400 ------>ZAT6 ->TOE2(3) ->TOE1(3) -ANAC55(2)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s) -->RAV1(2)              ------->TEIL                                      <---------ANAC58      ---- -ANAC46          --------->ANAC58   <---------TOE1(3)                     <---------ANAC58     ----- >At4g35610       --------->ANAC46   <---------TOE2(3)                --------->ATHB12          <---- ----->ZAT14      --------->ANAC58  <---------DOF5.7(2)               --------->ATHB51          ----- -GT1  --------->YAB1------->TEIL --------->DOF5.7(2)                <---------YAB1  <------ZmHOX2a(1) ------ZAT14 <----------DOF2     --------->YAB1       ---------->DOF2<---------AHL20(2)         <----   acactgttaacataacttttacgcatgtacccctatgttaacgttttagtcagttctaaagtataggcgatattattgcatgctgtaggactctacattt  10597500                                                                       <-------TEIL                                                                     --------->KAN4(2)                                                                    --------->KAN4(1)                                                                    <---------KAN4(1)                                                                    --------->HSFC1(2)                                                                    <---------HSFC1(2)                                                                    <---------HSFB2a(1)                                                                    --------->HSFB2a(1)                                                                   <---------KAN4(2)                                                                   ------->TEIL    --------->ARR11(3)                                           ------->GAMYB ----->ATHB12                 <------------------------ANAC81   <---------MYB52(2)      <------------ ---->AHL20(2)     <-------GAMYB     <----------DOF2            --------->MYB46(3)      ------------- -----AHL20(1)  --------->LBD16    ---------->ID1              <---------TOE2(3)       -------------- ---->AHL20(1) --------->HSFB2a(2)<-----------GT1             <---------DOF5.7(2)    <-----------GT1 -----AHL20(2)<---------LBD16<----------DOF2              ------>ZmHOX2a(1)    <----------DOF2   tattgggatattgtgttcgggagttgtgtttctttttttctttttatgttttcttctctcctgttaacgaacattcgtctgcttttgttactatatgaag  10597600                                                                                               ------                                                                                              -------                                                                                              <------ZmHOX2a(2)                                                                                             --------                                                                                             --------                                                                                             <-------                                                               <--------P                    <-------                                                            <---------TOE2(3)                <-------                                                         <---------YAB1                      --------                                                    <---------ZAT6                          <--------                                              --------->AHL20(1)                        <-----------HVH21 ---AGL15                                     <---------AHL20(2)                        =============HOX2a_HOX2a -->AGL15          <------NtERF2              <---------AHL20(1)                        ============= --->AGL3       <---------LBD16------->GAMYB  --------->AHL20(2)<-------TEIL            ------>ZmHOX2a(1)   tagagagactgcgattgaggcggaagaacataaccctcgacttaaaaatttattgtgttatcaaggttgattttcaatagataacctctccttcagatct  10597700 >ZmHOX2a(2) -->CCA1(2) ->AGP1 ->ARR11(3) --ARR11(3) --AGP1                                                                 <---------ANAC46 --ARR14(2)             --------->ATHB12                                <---------ANAC58     -------- ->ARR14(2)           <---------WOX13(1)                                <---------ANAC58    <-------- -CCA1(2)            <------------CBF   <----------DOF2           <-----------GT1      <------ZmHOX2a(1) =HOX2a_HOX2a  <---------ANAC46      <---------ALFIN1            <-----------GT1   ------------------   gggtttcttcattcgttttgggtaattgatttagttccccctctttgattttgtttcttcattcgttttatcttccttgtgtcttactaggatttttcgt  10597800                                            <----------DOF2                                           <---------ANAC58                                           <---------ANAC58                                       <---------ANAC58          ----------->HVH21                                    <--------P                  --------->At5g28300                                   <-------GAMYB                <-----------HVH21                                  --------->LBD16        <---------HSFB2a(1)            ----------->GT1                                 --------->LBD16         <---------HSFC1(2)         --------->HSFB2a(2)                                --------->LBD16          --------->HSFC1(2)         <---------HSFB2a(2)                                <---------LBD16          --------->HSFB2a(1)       ----------------->AGL1                             ------>ZmHOX2a(1)       ----------->ARR10    <---------WRKY38(1) -->ID1                ------>ZmHOX2a(1)<---------WOX13(1)    <---------ANAC46<---------ICU4 ---GT1            --------->ARR14(2)  <---------ANAC58 ------->TEIL      <---------WRKY12 --->WRI1    *TSS  <---------ARR14(2) --------->ATHB12 <---------ARR14(2)--------->WRKY18(1)   tttctatagacgatgtctccgattcctcttcctccccggttgattgctttcggcgaagaaccttgcggtgagagggtcaatgtttaccagaagtgaaaac  10597900                                  --------->ANAC58                                  --------->ANAC58                                --------->MYB52(1)                                <---------DOF5.7(2)                           <---------DEAR3(1)                           <---------ANAC46                                                         <                        ----------->HVH21                                                           <                        ----------->TGA1  <---------YAB1                                          <--                   --------->ANAC58      <---------AHL20(1)                                    <-----                   --------->ANAC58      <---------ARR11(3)                                 <--------                   --------->ANAC46----------->GT1                                          <--------                <---------ZAT18<---------WRKY38(1)       <----------DOF2                   <---------ZAT2                ------->GAMYB--------->At5g28300         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-----               --------->ANAC58<---------ZAT14    <---------DEAR3(2)                       --------->ZAT2               --------->ANAC58<---------WRKY12  <---------DREB2C(2)                      <---------YAB1               --------->ANAC46--------->ZAT14  ---------->ID1                      --------->MYB46(3)       --------->ARR14(2)--------->MYB52(1)   <-----------RAV1(1)    <-------GAMYB<-----------GT1 ---       <---------KAN4(2)<---------ATHB12 --------->AHL20(1)         <-----------RAV1(1)   ------>ZmHOX2a(1)   cctcttcggtatattcaacgcactcaatgacggtgaacggcaatatttttgtcggtctactttcgctagactgttggagttttctaacaatcctgcttgg  10598000                                --------->At4g35610                                <---------At4g35610                                <---------ZAT2 <---------MYB52(1)             <-------GAMYB                             <---------TOE1(2) ---------At4g35610         <------MYB83--------->ALFIN1                  --------->ATERF1(2) ------NtERF2               <------MYB46(1)                               <---------ATERF1(2) -------ZAT18              --------->MYB59<------NtERF2       <---------ANAC58 -MYB83                    --------->MYB111(1)                <---------ANAC58 --------->REM1(1) -ANAC58                  <--------P   --------->ATERF1(1)--------->CCA1(2)   <-------TEIL -ANAC58         <---------AHL20(2)  <---------AtMYB61   <---------ARR14(2)--------->LBD16 -MYB46(1)      <---------YAB1 <---------MYB46(3)        --------->ARR14(2)<---------DEAR3(2) ------>ZAT18--------->ICU4--------->MYB46(2)      --------->MYB52(1)    <---------LBD16       <-----   tccgctagttttggaatttttattttgggtaggcagttggaggtggctaagtctaacgagatttgggtgctattcgccggtacacctattcgtttttctt  10598100                                       --------->ARR14(2)                         --------->ZAT18                       <---------WOX13(1)                       <---------GLK1(1)                      <---------ANAC58 <---------ARR14(2)              <-----------HVH21     <------MYB83             ------>ZmHOX2a(2)      <------MYB46(1)             xxxxxxxxxxxxxxxx>smallRNA(s)  --------->LBD16            <------ZmHOX2a(2)      --------->MYB46(2)           <---------ARR14(3)      --------->MYB111(2)                      --------->LBD16           <---------ARR11(3)      --------->MYB111(1)                    <---------LBD16           --------->ARR11(3)      --------->MYB59                        <---------ZAT14           <---------ARR14(2)     <--------P                         --------->ZAT18              ---           --------->ARR14(2)     <---------MYB55(1)             ---------->DOF2               ------    --------->GLK1(1) <---------ANAC58<---------GLK1(1)       >>>>>>>>>TBF1<---------ANAC46    <----- -----DOF2 --------->ARR14(3)  <---------AtMYB61           >>>>>>>>>TBF1  --------->ZAT14  <---------   tgagggagttcaagatcgtcactggattgccctgtggtaggtatccgagtttgaagatgaagaagaagaaaggcactgcggggaagacgattcctttcta  10598200                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        --------->GLK1(2)                                                                                        --------->ARR14(2)                                                                              ==================HOX2a_HOX2a                                                                              ------>ZmHOX2a(1)                                                                            ==================HOX2a_HOX2a                                                                            ------>ZmHOX2a(2)                                                                           --------->GLK1(2)                                                                           <------ZmHOX2a(2)                                                                          --------->ARR11(3)                                                                          --------->ARR14(2)                                                                          <---------GLK1(2)                                                                          <---------ARR11(3)                                                                          --------->AGP1<---------ARR14(2)                                                                          <---------ARR14(2)                                                                         <---------At4g35610                                                                  <---------MYB46(3)   <------ZmHOX2a(1)                             --------->MYB46(3)                  <--------P===================HOX2a_HOX2a                           <-----------GT1                      <-------GAMYB ===================HOX2a_HOX2a     <---------MYB46(3) --------->bZIP60(1)                 ======================HOX2a_HOX2a ------>YAB1            <---------bZIP60(1)  <-----------GT1<------ZmHOX2a(1) --------->LBD16     <-- --------->AGL15       <-----------ARR10     --------->YAB1 =====================================HOX2a_HOX2a ----------AGL15      <------ZmHOX2a(1)     <---------YAB1  =======================HOX2a_HOX2a    <-- -DOF2             <------ZmHOX2a(1)   ----------->GT1      ====================================HOX2a_HOX2a   caataagtggtttggccttgaggaggatgtcaccatcgatagggttattacaatgttgaagaggagggttgtttcagatcctggtatgaggatccgatgt  10598300  Previous    Next  AGI:  At5g28600.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1) Range:  from: 10597813    to: 10603454    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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