Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------ICU4  --------->YAB1 --------->ICU4 <---------YAB1 ---------AHL20(2)                                   <---------------AtSPL8 ---------AHL20(1)                         ----------->GT1 -------->AHL20(2)            --------->LBD16      --------->YAB1 ------->YAB1                 --------->At5g28300  --------->MYB52(1) -------YAB1                 --------->TOE2(3)     <---------ICU4 ----AHL20(2)                ----------->GT1      <---------ATHB51 ----YAB1                  <---------At5g28300  --------->YAB1              --------->YAB1          - --->AHL20(2)       ---------->DOF2    ---------->DOF2                     <---------ATHB12        -- --DOF2        --------->AHL20(2)  ---------->DOF2<---------AHL20(2)     --------->WOX13(1)<---------MYB52(1)   attataattagagatgaataaataaagtttaccgtaaaaaagaaagagtaaaataatggtactaagctagtgtgtcaatcatataatgcatcagttattg  10510900                    <---------YAB1                    --------->AHL20(2)                    <---------AHL20(2)                   <---------AHL20(2)                   --------->AHL20(2)          <-------TEIL         <--------P<---------AHL20(1)      <---------TOE2(3)   ----------->GT1                                       <----------DOF2 --------->ANAC58  --------->AHL20(1)                              --------->YAB1       ---------->DOF2 --------->ANAC58 --------->YAB1                        --------->ANAC55(2)  <---------ARR11(3) -------->DAG2 <---------AHL20(2)                       <---------ANAC55(2)  --------->ARR11(3) -------->DOF2--------->AHL20(2)<-----------GT1         <---------ANAC46    <---------CCA1(2)      <-   aaaaagcaaaggttgatttaatataatttggaaataactagtttgactctattctatcacgtataactagaatgacctatatcttttgcgaaaagacatt  10511000                                           --------->ANAC46                                           --------->ANAC55(2)                              <--------                                           <---------ANAC55(2)                              <--------                                           --------->ANAC58                                 <--------        <---------ANAC46                 <-----------GT1                                  <----------      <---------ANAC46                <---------ICU4     <-----------GT1               <---------ICU4 ----------GT1           --------->MYB52(1)--------->ANAC58                     <----------DOF2   ataacctgttgtgtaatagagaaaacaaaacgggcatcaaaaattacgaaactaagttttttctatatttttcgacaaaattctttaacttattacttga  10511100                                                                     -------->ATHB1                                                                     --------->AHL20(2)                                                                     --------->ATHB51                                                                    <---------YAB1                                                                    <---------ATHB51               <-                                                        <---------AHL20(2)            <---------YAB1 -ANAC58                                                <---------AHL20(1)         --------->AHL20(2) -ANAC58                                                --------->AHL20(2)         <---------AHL20(1) -ANAC55(2)                   --------------->AtSPL8    --------->AHL20(1)---------->DOF2          -- -GT1            <-----------GT1                   <---------ATHB12 --------->ICU4 <---------AHL20(2)   gactcaagttatctccaatttagcacttatacgttgtactagttcatttgcaaatcaataaaatactacaattattcaaagtcattttattttagtttat  10511200                          --------->STY1(2)             --------->ANAC58             --------->ANAC46             ----------->GT1             --------->ANAC58           ---------->DOF2<---------STY1(2)                         ----------->GT1            <-----          --------->ARR14(2)                                        <------MYB83               <-----          <---------ARR14(2)                       --------->MYB46(3)            <---------AtMYB61  <          <---------GLK1(2)                     --------->REM1(1)   <------MYB46(1)     <------------CBF --------ANAC55(2)   <-----------GT1       --------->ZAT6        <------ZmHOX2a(1)  <---------ZAT6  < ------->ANAC55(2)  --------->AHL20(1)    <---------YAB1   ----------->HVH21  <----------DOF2 *TSS <-   cacttattaacagaaacgcaaatatactagctcgaattttgactatgactacaacaactatctcacaggaaggtagaaaacttttggtgttattgtggtg  10511300               <----------DOF2              <xxxxxxxxxxxxxxxxsmallRNA(i)              --------->AtMYB61           ------>NtERF2                                                                 --------->TOE2(3)          --------->DEAR3(1)                                                            <---------ATHB12          --------->DEAR4(1)                                                            --------->MYB46(3)         --------->DEAR3(2)                                                            -------->P         --------->ATERF1(1)                                                           ------>MYB83         --------->RAP2.3(1)                                                           ------>MYB46(1)         --------->ORA47(2)                                                           ------>MYB83<--        <---------RAP2.3(1)                                                           ------>MYB46(1)        <---------ATERF1(1)                                                         --------->MYB46(3)        ------>NtERF2                                                               <---------MYB59    ----------->HVH21                              <---------ARR11(3)              --------->ANAC58    --------->WRKY12      --------->ATERF1(1)      --------->ARR11(3)              --------->ANAC46   <--------P <---------DAG2                   ---------->DOF2              --------->ANAC58     <--- ----ZAT6<------NtERF2 <------ZmHOX2a(1)      --------->LBD16               --------->ANAC46     <--- ----ANAC46--------->ORA47(1)                --------->HSFB2a(2)            --------->ANAC58     ---- ---------TOE2(3)   <---------LBD16          <---------HSFB2a(2)          <---------DOF5.7(2)    <--- ---------TOE1(3)   <---------HSFB2a(2) <----------DOF2               <---------ANAC55(2)--------->YAB1 ----------RAV1(2)  --------->LBD16<----------DOF2--------->YAB1  <-----------HVH21--------->ANAC58   ttcaggttgacgccgacctttccgaggaggctacgacctttgctgttccgaaagataattcggacctatgtcaagtgaacgccagacccaaccataagtt  10511400                                 <------NtERF2                                 --------->ZAT18                                <---------RAP2.3(1)                               <---------RAP2.3(2)                          <---------ARR14(2)                          --------->ARR14(2)                                   ------>ZmHOX2a(2)                         --------->ATHB12                                    <---------ARR14(2)                         <------ZmHOX2a(1)                                   <---------AGP1      >>>>>>>>>NAM      <---------YAB1          <---------ANAC58             --------->ARR11(3) ---------->DOF2     <------ZmHOX2a(2)          <---------ANAC58             <---------ARR11(3) -----GAMYB         --------->ARR11(3)     <----------DOF2                   --------->ARR14(2) ---MYB46(1)        <---------ARR11(3)     <---------DAG2        --------->GLK1(1)      <----------DOF2 ------MYB46(3)   --------->ICU4<---------ERF1  <---------ANAC46 <---------GLK1(1)   --------->ARR11(3) ------->GT1    ---------->DOF2<---------DEAR3(1)<---------LBD16<---------ARR11(3)   <---------ARR11(3) ---MYB83    ----------->GT1   <---------RAP2.3(3)           --------->LBD16<---------CCA1(2)   ggttaaagggatgaagagtaaagatcaggattggctgcgctactactttttcgtggagttatccgagatttctgttttggatcttgacatctttttcatt  10511500                          <----------DOF2                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                                             <------MYB83                        <---------RVE1(1)                                             <------MYB46(1)                       --------->ARR11(3)                                             <---------MYB46(3)                       <---------AGP1                     <---------DOF5.7(2)<----------DOF2                       <---------ARR14(2)               --------->DOF5.7(2) -------------->OsCBT                       --------->ARR14(2)              --------->TOE2(3)   --------->LBD16                       <---------ARR11(3)              --------->TOE1(3)<---------At5g28300                      <---------CCA1(2) --------->WRKY18(1)        <-----------GT1   --------->MYB59                     ----------->ARR10 <-----------HVH21<---------MYB52(1)------->GAMYB          ----   tccgagtggaatttgtttccaagtagatcttttttagttatggtcatgggaggctatcgttaatgctattttctaaccgcgttttgtttggttcgcataa  10511600                                --------->ARR11(3)                                --------->ARR14(2)                         --------->WRKY12                               <---------GLK1(1)                           --------->WRKY38(1)                               --------->GLK1(1)                          <---------MYB52(1)                               --------->RVE1(1)                  <---------HSFB2a(1)                              <---------ARR11(3)        <------ZmHOX2a(1)<-------GAMYB                              --------->ARR11(3)      --------->MYB59   <---------ANAC46                   <---------ANAC58                 <---------MYB52(1)  <---------ANAC58                   <---------ANAC58             --------->At4g35610     <---------ANAC58             --------->HSFB2a(2)<---------ARR11(3) <-------GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------YAB1<------ZmHOX2a(1)               <---------At4g35610 <----------DOF2           ------- ----->YAB1  <---------HSFB2a(2)<---------ARR14(2)<----------DOF2--------->GLK1(2)           <-------TEIL   cataatttttgacctcgaggagcttgtggagagatatctgcgagtcttgctgctgttaggacgagagaacctttgcgttggccagacgttactgattcat  10511700                     <---------ARR11(3)                     --------->ARR11(3)                     <---------ARR14(3)              <---------ANAC58                                                                 <-----              <---------ANAC58                              <---------ANAC58                <--------        <---------TOE1(2)                                   <---------ANAC58  <---------GLK1(2)------       <---------MYB52(1)          ---------->ID1           <---------ANAC55(1)        <-----------GT1     <---------ANAC46<---------ARR14(2)                     --------->ANAC55(2) <-------TEIL<--------     <---------ANAC55(2)     --------->MYB52(2)             <---------ANAC55(2)--------->ARR14(1)     <---------ANAC58--------->ARR14(3)                     <---------ANAC46  --------->ARR14(2)     <---------ANAC58--------->GLK1(2) <---------MYB52(1) <-----------GT1     --------->ARR11(1) -->ATHB12    <---------ANAC46 <---------MYB52(1) <-------TEIL                <---------ARR14(2)   ttgaatttcgtaagttccttgaaaatcttgttcgtttgtccgtttgtcttgatacattttttacgtgaaactgttttaaagattcgttgttacactttta  10511800  Previous    Next  AGI:  At5g28525.1    Description:  pseudogene, hypothetical protein Range:  from: 10511294    to: 10512807    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version