Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------>ZmHOX2a(1)                        <---------------AGL15                        --------->TOE1(3)                       <-----------------AGL3                       ----------------->AGL3                       ----------------->AGL2                   --------->HSFB2a(1)                   <---------HSFB2a(1)                   <------MYB83                   <------MYB46(1)                   <---------HSFC1(2)       ----------------->AG       --------->TOE2(3)--------->TOE2(3)       ----------------->AGL1       --------->TOE1(3)--------------->AGL15       --------------->AGL15                                                                      <--       <---------------AGL15                                                          --------->ANAC58       =================================MADS_MADS                                     --------->ANAC58      ==================================MADS_MADS                                     <----------ID1<      ----------------->AGL2                             --------->ANAC46      ----------->GT1    <--      <-----------------AG                               --------->ANAC58     --------->DAG2     <--- ---->YAB1 ---------->DOF2                               --------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxx ---WOX13(1)       --------->HSFC1(2)                  ---------->DOF2       ---------->DOF2 -------- >ATHB12<---------------AGL15                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46   ataacaaaaccctaaaagggaaggttccttaaatagcatctactgagactcaatacaaaacgcagcatttcgataacccaaaagtaaaacgacacagttg  10373800         <---------At4g35610         <---------ZAT2         --------->ZAT2      <---------ANAC58      <---------ANAC58                                  <---------ARR11(3)     <------NtERF2                                      --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(i)                        <---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <-----------ARR10 --------->ZAT2                              --------->HSFC1(2) <---------ZAT2                              <---------HSFC1(2) <---------At4g35610                         --------->HSFB2a(1) --------->At4g35610                         --------->At4g35610 -------ANAC58                               <---------HSFB2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(i)        --------->AHL20(2) <------ZmHOX2a(1) -------ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <----------DOF2 ---NtERF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----------RAV1(2)    <---------DAG2          <- xsmallRNA(fl3)<----------DOF2   <---------DAG2     <---------LBD16      ------>NtERF2      ------>ZmHOX2a(2) ->ZAT2  --------->At4g35610     <----------DOF2   ------>ZmHOX2a(1)--------->ZAT2        --------->ARR11(3)   gcgagctggcgagctgtctttctgtgccttagccacttttaaatagaagcttcctcaggaacttctcacgagctctgcctttccttccatttgatctcgc  10373900                               --------------->AGL15                          --------->LBD16                         --------->ANAC55(1)                         --------->ANAC55(2)                      ------>NtERF2                     <---------ALFIN1                   ------->GAMYB                  --------->ANAC58                  --------->ANAC58                  --------->ANAC46                --------->MYB52(1)              <---------MYB52(2)              --------->MYB46(3)              <---------MYB55(2)        ------->TEIL             ------>MYB46(1)  <-----------------AGL2                              ------>ZmHOX2a(2)             ------>MYB83--------->ANAC58                                        --------->At4g35610            --------->ANAC58  <-----------------AGL1                      ------>ZmHOX2a(1)            --------->ANAC46  <-----------------AGL3                      --------->HSFB2a(2)            --------->ANAC58--------->ARR14(2)                            ===============HOX2a_HOX2a           --------->MYB46(3) ----------------->AGL3                      <---------HSFB2a(2)        --------->ANAC58 --------->ANAC58                                <---------LBD16     --------        --------->ANAC46 <---------ANAC55(2)                 <---------ANAC46   --------->ARR11(3)        --------->ANAC58 --------->ANAC46                  --------->ALFIN1     <---------ARR11(3) --------ALFIN1<---------WRKY38(1)<---------YAB1   <---------MYB46(3)   ----------->RAV1(2)  <-------   cctacttctcacaccagccaacggcacccgtaacctattatggacctcatgagttgttgagttgtgggatgctctcctggatgatctgaatgcctagcag  10374000                                                                                             xxxxxxxx                                                                                             ------>ZmHOX2a(2)                                                                                           --------->ARR14(2)                                                                                       <xxxxxxxxxxxxx                                                                                  ----------->HVH21                                                                                 ------>ZmHOX2a(2)                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                      --------->ZAT2 <---------ANAC58                      <---------ZAT14                                 <---------ZAT2 ================                      --------->ZAT2                                  <---------At4g35610  <---------ARR14(2)                      --------->ZAT14                                 --------->At4g35610xxxxxxxxxxxx                 --------->At4g35610           ------>ZmHOX2a(2)     --------->ANAC58<---------ANAC58          <---------WOX13(1)                 --------->ARR11(3)      --------->ANAC58<---------TGA1a      <---------MYB59 <---------ZAT2       <---------ATHB12     --------->ANAC58--------->At4g35610     --------->At4g35610                 ------>MYB46(1)      <---------AtLEC2 --------->ARR11(3)  ----------->HVH21--------->DEAR3(1)    ------>MYB83     --------->At4g35610  <---------ARR11(3) ->ZAT2 --------->MYB52(1)       <------MYB83<---------ARR11(3) --------->ANAC58<---------At4g35610-- --ZAT2----------->HVH21         <------MYB46(1)          --------->ZAT2 <-----------RAV1(2)<------ZmHOX2a(2)   agaaatgacctgactgatgagccgagcagtgagataggttaccaaatgatcttgctaacaagctgcaaggcaagctcagatgatctgacgagcgatctgg  10374100                                                                                             <-------                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                    <---------At4g35610           <---------ARR14(2)                                                    --------->ZAT2                --------->ARR14(2)     <--------P                           --------->LBD16                        <---------RAP2.6(3)  <---------TOE2(3)          ------>ZmHOX2a(2)      --------->At4g35610       <---------At4g35610 xxxxxxxx>smallRNA(i)       <------ZmHOX2a(2)  <---------At4g35610            --------->At4g35610 xxxxxxxxxxsmallRNA(fl3)   --------->ARR14(2)  --------->At4g35610         --------->ZAT2  --------->YAB1 =============MYC_MYB      <---------ARR14(2)<-----------RAV1(2)           --------->At4g35610 xxxx>smallRNA(i)    <---------ANAC58   <---------LBD16                    <---------At4g35610------- ------->CCA1(2)     <---------ANAC58<---------GLK1(1)----------->GT1  <----------CDC5    --------->ICU4   gatataggttgctaaatggtttgtcttgcgatctgcgagatagccgggcagatgagctgaaaaaaacatttgcgatgagctgcagacatgccattatcat  10374200                    <----------DOF2                                    <----------DOF2                  <---------At4g35610                           --------->TGA1a             --------->TGA1a                                    <---------ANAC58             <---------ANAC58                                   <---------O2             <---------TGA1a                                    <---------ANAC58             <---------O2                                       <---------TGA1a             --------->O2                                       <---------ANAC46             <---------ANAC46                                   ==================bZIP_DOF             <---------ANAC55(2)                                <---------ANAC55(1)             --------->ANAC55(2)                                --------->ANAC55(2)             <---------ANAC55(1)                                <---------ANAC55(2)             =================================================MYC_MYB<---------At4g35610             ==================bZIP_DOF                         --------->O2             ==================bZIP_DOF                         ==================bZIP_DOF             <---------ANAC58                                 --------->CCA1(2)           --------->CCA1(2)                                 <---------ARR14(2)          --------->ARR11(1)                                 --------->ARR14(2)          --------->ARR14(2)                                 --------->ARR11(1)          <---------ARR11(3)                               --------->ANAC58        --------->ANAC58                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ----------->ARR10                            <--------P<-------TEIL   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------YAB1 ----------->ARR10  <--------P<-------TEIL                  <-----------GT1  --------->ANAC58  <---------At4g35610  =====================MYC_MYB============================================bZIP_DOF --YAB1 --------->ANAC58  <---------At4g35610        =====================MYC_MYB                 <-- -->ATHB12<---------ARR14(2)  <----------DOF2--------->ATHB12<---------ARR11(3)  <----------DOF2  <--   ttgggttagcaagatacgtgagcttttgagctctttttttttttttatcatttgggttagcaagatacgtgagcttttgagctctttttttttttttttt  10374300          <---------HSFB2a(1)         --------->GLK1(1)         <---------GLK1(1)       <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ANAC58   <---------ANAC58   <---------ANAC46                                                                            <-----  <-------TEIL                                                                                 ------ --------->ALFIN1                                                            --------->ANAC46  <----- xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ANAC58                     --------->ANAC55(2)    - xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC58                    --------------->AGL15   < -------TOE1(3)                       ---------->DOF2                       <---------------AGL15 <-- -------TOE2(3)         ------>ZmHOX2a(1)                                  <-----------GT1  ---------   aaggtgcgaggaactctcggcttatcctgttttgaagacttaaagcaagacgaggtctcggtttttgtgaaacattttcacataatagcaagcgttgagc  10374400       --------->AHL20(2)       <---------AHL20(2)       <---------ZAT2      <-----------TBP           <---------At4g35610  ------------>CBF              --------->ZAT2           <---------AHL20(2) ----At4g35610               --------->WRKY38(1)       <---------YAB1 --->ZAT2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------AHL20(2) ----ZAT2 <---------YAB1   <-------GAMYB             --------->AHL20(2) -------->At4g35610   <---------ANAC58               --------->ATHB51    ------->TEIL            <--- ---------At4g35610   <---------ANAC58           --------->ICU4<----------DOF2          --------->ZAT18 -------DEAR3(1)----------->HVH21        --------->MYB52(1)<-----------GT1           <------MYB46(1) >WRKY38(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->YAB1  <---------YAB1     <------MYB83<---   tcggctcaatttataagtgtgactgcgagcgttgagctcggattaactgcaagaattatttttatcttttgaatgtagctcgatgctaggtgaactaagc  10374500                                      --------->YAB1                                     <---------ATHB12                                            <---                                     <<<<<<<<<ARR2                   --------->ATHB12            ----                                   --------->WOX13(1)             --------->YAB1                 ----                                  --------->MYB46(3)        <---------ANAC55(2)                  <---                          <---------WRKY18(1)               --------->ANAC55(2)              <-------        <------NtERF2  <---------ANAC58               --------->ANAC58                <---------ANAC58 ------DAG2            <---------ANAC58               --------->ANAC58                <---------ANAC46 -------DOF2         --------->ARR11(3)         ---------->DOF2   <---------ICU4      <---------ANAC58   tttttgagtcgggactcaatttagagcttgacttcaacaatcaaaaaatgtaaagcacgaatacttaatcttgatgggagaagaaatggcgagaggctga  10374600                                                                            --------->YAB1                                                                            <---------AHL20(2)                                                                            --------->AHL20(2)   <---------GLK1(2)                                                       <---------YAB1   <---------ICU4                                                       <---------YAB1 ------ZAT2                                                           <------ZmHOX2a(1) ----->At4g35610            <------ZmHOX2a(1)                         --------->YAB1 ----->ZAT2           --------->DAG2                                <---------TOE2(3) ------At4g35610     ---------->DOF2                              ---------->DOF2               <---- ---CDC5          ----------->GT1         ---------->DOF2     <---------TOE2(3)           ---------->DOF2   gctcagaattgctgttccaaaggtaaagtaggagaagtgatcaacaaagccctcttggagttttaatgtaaaggataattatatgagaaaaataaagatt  10374700  Previous    Next  AGI:  At5g28450.1    Description:  chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative. similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) (GB:P13869); similar to Chlorophyll a-b binding protein 7, chloroplast precursor (LHCI type II CAB-7) (GB:P10708); similar to unknown [Populus trichocarpa] (GB:ABK95601.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 10372942    to: 10374194    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version