Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------At4g35610                         --------->DEAR3(1)                     --------->TGA2(2)                     ----------->HVH21                    <-----------HVH21                    <-----------TGA1                   --------->TGA1a                   <---------bZIP60(1)                   <---------O2                   --------->O2                   --------->TGA2(1)                   --------->bZIP60(1)                   ==========================================MYC_MYB                   --------->ANAC58                   --------->ANAC46                   --------->ANAC55(2)                   <---------bZIP60(2)                   --------->ANAC58                   <---------TGA2(1)                   <---------TGA1a                   --------->bZIP60(2)                                     <---------ZAT2  <------NtERF2  --------->MYB52(1)                                        <---------At4g35610  ------>NtERF2  <---------TGA2(2)                                         --------->ZAT2 <---------SPL7 ----------->TGA1                                      xxxxxxxxxxxxxxxx>smallRNA(s) ----------->HVH21<-----------STF1                                <---------ANAC58          --------- --------->ZAT18----------->HVH21                                 <---------ANAC58    <---------YAB1 -----ANAC58  ----------->RAV1(2)                               xxxxxxxxxxxxxxxx>smallRNA(s)========= -----ANAC46  <---------At4g35610                             <---------ANAC58    <----------DOF2<--- -----ANAC58  --------->At4g35610                     --------->MYB52(2)   --------->At4g35610   ---- ---DOF2    <-----------GT1        <-----------GT1  <--------P<---------ANAC58    ===================   gggcggactggttttcacctgacgtcacagccgattttttctgtctaagttcgggttagatgttaagtgcgagactgagctcggctttataaataaaagt  10319700      --------->ZAT18      --------->REM1(2)      --------->ZAT14                                                 <---------ARR14(2)      <---------ZAT14==================================================bZIP_DOF   <---------ANAC46  --------->O2                                     --------->ARR14(2)   <---------ANAC58  <---------O2                                    <---------GLK1(1)   <---------ANAC58  <---------TGA1a                                 --------->GLK1(1) ->DOF2              --------->TGA1a                        ---------->DOF2 ==============================bZIP_DOF                    --------->AHL20(2) ------ARR14(2) <------NtERF2                             <---------AHL20(2) ----->ARR14(2)------>NtERF2   xxxxxxxxxxxxxxxx>smallRNA(i)<---------AHL20(2) ==============================bZIP_DOF               <---------AHL20(2)                          <--   attcggcgtgtactgggcgcgagacgtctctcggcttatgcccagtaggcctatgtataatttaaagagggagttctgggctctgtataaaaaataagtg  10319800                                                                           <---------HSFB2a(2)                                                                          ------>ZmHOX2a(2)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                         <------ZmHOX2a(2)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)        <---------At4g35610                                            <---------At4g35610  <------NtERF2                                                 <---------MYB52(1)                  <  ------>NtERF2               --------->GLK1(2)     --------->LBD16    --------->At4g35610<---------RAP2.6(2) <---------ZAT18         xxxxxxxxxxxxxxxx>smallRNA(s)      --------->GLK1(2)             <-------TEIL -------ANAC46     <---------LBD16                 --------->ANAC46 <---------At4g35610 --------->ALFIN1   aggcggactcagcatattagttggggagcgagatgctgggctcaacttactccccgtagagcatctgttcggcagatcgcgaaatacagggttcggctta  10319900                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                      <---------AHL20(2)                                                      --------->AHL20(2)                                                   <---------AHL20(2)                                                   --------->AHL20(2)                          <---------HSFB2a(2)      --------->AHL20(1)                --------->CCA1(2)              <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->AHL20(2)        <---------ZAT14 -----------GT1    <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------AHL20(2)     <---------ANAC46   tatttctgtccgaaccagagcttaagtgcgagaaaactaatagtctatagaattaaattaatagtctatagaatggagtaaaccgagaaatgagagagag  10320000                         <---------WOX13(1)                       --------->YAB1                       <---------ICU4                       --------->ATHB12                       --------->ATHB51                                    <---------AHL20(1)                       -------->ATHB1         --------->AHL20(2)           <---------AHL20(2)                       <--------ATHB1         <---------AHL20(2)           --------->AHL20(1)                      <---------ATHB51       --------->AHL20(2) --------->MYB46(3)                  -                      <---------ATHB12<---------MYB46(3)       --------->ANAC58             <--------                      --------->ICU4<---------MYB52(1)         --------->ANAC58 --------->ANAC46  <--             --------->YAB1        <---------MYB52(1)  <-----------------------TaNAC69(2)<---------AHL20(2)           <---------TOE2(3)      --------->LBD16      <-------TEIL--------->MYB52(1)    --------->AHL20(2)         --------->TOE1(2)       --------->LBD16     <---------GLK1(2)    --------->AHL20(2)---------        --------->MYB46(3)      <---------LBD16    ----------->ARR10      --------->YAB1--------->AHL20(2)   ttctccttgaaccaaggataatcaataattgattcccggtttgttcataaaattagattcgtagcacccaaaccgattatattcgcaaaattaaaatccg  10320100                                                               <-------TEIL                                                              <------ZmHOX2a(2)                                                              ============================HOX2a_HOX2a                                                   ----------->HVH21                                                ------>ZmHOX2a(2)            --------->ALFIN1               *TSS<---------At4g35610      <<<<<<<<<TBF1     ---------->DOF2       --------->YAB1 <------------CBF   --------->ARR14(2)                    <<   --------->TOE2(3)  ------------>CBF  --------->REM1(2)    <---------ARR11(3)                 <<<<< ---------->RAV1(1)--------->GLK1(1)  --------->LBD16        --------->ARR11(3)              <<<<<<<< -ARR14(2) <---------MYB52(1)        <---------ANAC58        <---------ARR14(2)        <<<<<<<<<TBF1 ----ZmHOX2a(2) ------------>CBF     <---------ANAC46        --------->AGP1<<<<<<<<<TBF1  <<<<<<<<<TBF1 >ARR14(2) <-----------HVH21         <---------ANAC58       --------->GLK1(1)      ------>ZmHOX2a(1)   atcaacataaaccggtcgggcaattccaattttgatgctccgtgtattgatctgcgactgcgagatccatcttcttcttcttctccttcttcttcttctt  10320200                                                        <------ZmHOX2a(2)                                                       --------->AGP1                          ------>ZmHOX2a(2)            --------->ARR14(2)                         <---------GLK1(1)             <---------ARR14(2)                        <---------ARR11(3)            --------->At4g35610                        --------->ARR11(3) --------->GLK1(2)                       --------->YAB1      <---------ARR14(2)                     <---------TOE1(2)     --------->ARR14(2)                    =============HOX2a_HOX2a        --------->YAB1  <<<<<<<<<TBF1     ------>ZmHOX2a(1)     <---------GLK1(2) <<<<<<<TBF1  --------->HSFB2a(1)         <---------ARR14(2) <<<<TBF1 --------->MYB46(3)          <---------At4g35610                                        ---- <TBF1  ----------->RAV1(1)           --------->At4g35610<-------TEIL                       <--------P   cttcttcttccaacaaatgttcctatgatctctgtgtatgagcagaatctgtaatcagatccattgtagagagagatagccatttcaattcgaggtagcc  10320300                                                                                               ------                                                                                              -------                         <------NtERF2                                                        -------                         <-----------RAV1(2)                                                  <------                        <---------At4g35610                                                   <------                        <------NtERF2                                                        --------                      <---------RAP2.6(2)                                                   <--------                      --------->ATERF1(1)                                                   ---------                     --------->ATERF1(1)                                                    <------NtERF2                     <------NtERF2                                                         ------>NtERF2                    <---------DEAR3(1)                                                     <---------SPL7                    <---------ATERF1(1)                                                    <---------ATERF1(1)               <---------ANAC46                                                           <---------DEAR3(1)               <---------ANAC58                                                           <---------ATERF1(2)               <---------ANAC58  ------>ZmHOX2a(2)                                  <---------At4g35610               <---------ANAC55(1)                                           ------->TEIL --------->ATERF1(2)              <---------LBD16----------->HVH21    <---------ANAC58          <---------CCA1(2)--------             --------->MYB52(1) --------->PCF5    <---------ANAC58      <---------ANAC58  --------->DEAR3(1)           <---------ANAC58<---------At4g35610    ------>ZmHOX2a(2)     <---------ANAC58 --------->ATERF1(1)           <---------ANAC58--------->At4g35610  --------->ARR14(2)      <---------ANAC46<---------ATERF1(1)     ------->TEIL  --------->ALFIN1             <---------ARR14(2)<------NtERF2--------->TOE2(3) ------>DOF2<---------SPL7 <---------ZAT2  ----------->RAV1(2)--------->ANAC46 --------->TOE1(3)<----   aaagatgtatatggcttacgggtggccgcaggtgatcccgcttctacctggatcgtgtccgtcttcgcagcgagtcgtgtaccttaagctcgccggccgg  10320400      <---------MYB52(1)   <---------ANAC46   <---------ANAC58   <---------ANAC58                                         <---------ICU4 >NtERF2                                            <----------DOF2 -->RAP2.6(2)                                       <---------DAG2 -->ATERF1(2)           <---------LBD16           <-------TEIL ---DEAR3(1)           <---------ZAT2          <---------At4g35610                                 <- ---ATERF1(2)          --------->At4g35610     <---------ZAT2 --------->At4g35610                 <-- ->RAP2.6(3)           ----------->RAV1(2)     --------->At4g35610                                <-- -ATERF1(1)            --------->ZAT2        <-----------RAV1(2)                                  --- >ATERF1(1)         ----------->HVH21 --------->ARR14(2) --------->YAB1          --------->ATHB12 <-- ->SPL7<--------P<-----------HVH21    <---------ARR14(2)<---------YAB1       ------>ZmHOX2a(1)  <---- --NtERF2    <-----------GT1   <----------DOF2<---------TOE1(2)         <---------GLK1(1)     <------   ctattgctggtagtttctccgtctcacctggagctttggggttcttctcaggtgctttatcatcatctctctgcatttcctagtaattggagtctagagt  10320500 ------GAMYB                   --------->LBD16                                        --------->HSFB2a(2) ----MYB46(1)                  ------>ZmHOX2a(1)         ---------->DOF2              <---------HSFB2a(2) ----MYB83                     --------------->AGL15  <------MYB83                   <XXXXXXXXXXXXXXX -------->GT1                  <---------------AGL15  <------MYB46(1)   ----------->HVH21 -------MYB46(3)               <---------HSFB2a(2)  <--------P        --------->CCA1(2) ----P        <----------DOF2  --------->HSFB2a(2)  --------->ALFIN1  <---------At4g35610 ---ZAT6      <---------DAG2  <---------LBD16    <---------TOE2(3)    --------->At4g35610      <-----   tggttaacttacatagctttttgtttgattttcctggaattagcaacgagtgaggttgggaaagtatatgagagatgacaagtctgtgcgagaagaagga  10320600  Previous    Next  AGI:  At5g28350.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39674.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81454.1); similar to WD40-like [Medicago truncatula] (GB:ABD28704.1); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain Protein of unknown function DUF1339 (InterPro:IPR009771); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044) Range:  from: 10320143    to: 10326950    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version