Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                            <xxxxxxxx                                                                                            ---------                           --------->AHL20(2)                                         --------->ATHB12      <---------ANAC58     <---------AHL20(2)                                         <---------ICU4      <---------ANAC58    <---------AHL20(2)                                         --------->ICU4      <---------ANAC46    --------->AHL20(2)      <---------AHL20(2)                 <---------YAB1 ---------YAB1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ICU4<--- -------GT1    --------->AHL20(2)          <---------At4g35610                     --------->YAB1---- >ARR14(2)     <---------AHL20(2)        <-----------RAV1(2)            --------->ANAC58   --------->ANAC55(2) >GLK1(2)     --------->AHL20(2)<-----------RAV1(1)    ----------->GT1  --------->ANAC58   <---------ANAC55(2) -ARR14(2)    --------->YAB1    =====================RAV    ---------->DOF2      --------->ARR11(3)--   acattatagcttggaattaaaattttaaaaaaatttgttgggctcagatgttttaaatgctaaaaagttttgacaagacaaaaaatcatgattacctatt  10240900                        <-----------GT1                        <---------AHL20(2)                                           --------->ARR14(2)         --------->AHL20(2)                                                          <---------ARR14(2)         <---------AHL20(2)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------AHL20(1)                                                 <---------ANAC46        --------->AHL20(2)                                                 <---------At5g28300 -------YAB1<---------YAB1--------->ANAC55(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->AHL20(1)     <---------CCA1(1)                        --------->GLK1(2)      xxxxxxxxxxxxxxxxx ------AHL20(1)     <---------RVE1(1)          --------->LBD16 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->YAB1  <---------AHL20(2)    <---------YAB1             <---------ARR14(2)     <---------GLK1(2) ----YAB1--------->AHL20(1)       <---------TOE2(3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3)     <---------TOE1(3)     --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>AGL15      --------->ARR11(3)         --------->HSFB2a(2)      <---------ZAT6--------->GLK1(2) ------AHL20(2)    <---------AHL20(1)         <---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----->AHL20(2)    <---------ARR11(3)     <---------GLK1(1)  --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxx ------->YAB1--------->YAB1  <---------ICU4  <---------LBD16 ------->TEIL<---------SPL7           ---   ataatagagattatattataagatatttacataattaagattagaattctgggaaaaaaaacgaatccaaattgtgttacggtgaagaatctgaagtttt  10241000                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ICU4         <-----------GT1  ----------->HVH21            --------->ANAC58     <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ------>ZmHOX2a(2)      --------->TOE2(3)     xxxxxxxx xxxxxx>smallRNA(le3)<---------TOE1(3)        --------->ARR11(3)<---------ZAT6  <-----------GT1    <- xx>smallRNA(si3)    <---------TOE2(3) --------->GLK1(2)     <-------TEIL   --------->AHL20(2)   ---- ------>MYB52(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->ANAC58--------->YAB1       ---------   tagttgctgttttacaaagtttgaaggtttgaaggggagacaatctgtgatctgggtaagaaattcgtgttaatcttattaattacacttgagaacgtga  10241100                      <---------AHL20(1)            ------>ZmHOX2a(2)                                                <---------AHL20(2)         -------->HAHB4<---------AHL20(2)                        <---------YAB1 ---------->DOF2      --------->AHL20(2)               <---------GLK1(2)     --------->AHL20(2) ===== xxxxxxxxxxxxxx>smallRNA(se3)  <---------TOE2(3)       <---------ARR14(2)  --------->CCA1(2)    ----- --------YAB1     <---------AHL20(2)  <---------AHL20(2)   <----------DOF2<---------ARR11(3)  ------- ----->CCA1(2)   --------->AHL20(2)   --------->AHL20(2)--------->GLK1(2) --------->ARR11(3)  <------ -->GT1 --------->ICU4<---------AHL20(2)       <-----------RAV1(1) <----------DOF2 ---------->DOF2   tatgaaagtaatgatccgttttaatttttttttaagtttataaattgttttgttggagattctttttatctttgtagatataaatgaaagccctatgatc  10241200                                                                                          <---------AHL20(2)                                                                                    ------>ZmHOX2a(2)                                                                                   --------->CCA1(2)                  <-------TEIL                                                     <------ZmHOX2a(2)      --------->AHL20(2)                                                          <---------AGP1      <---------AHL20(2)                                                          <---------ARR11(3)     <---------AHL20(2)                                                           --------->AGP1     --------->AHL20(2)                                                           --------->ARR11(3) <---------AHL20(2)                                                ---------->DOF2<---------ARR14(2) --------->AHL20(2)                                   <---------At4g35610         --------->ARR14(2) ===================HOX2a_HOX2a                       --------->At4g35610        --------->RVE1(1) ->ZmHOX2a(2) <---------TOE1(2)            <----------DOF2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) < -->ARR11(3) ------>ZmHOX2a(1)          --------->GLK1(2)------>NtERF2        ---------->DOF2      xx ---ARR11(3)--------->TOE2(3)          <---------GLK1(2)----------->HVH21     =======================   tgttttattaaattcctaagttcatcaattgttttgttagagattctttttgtcttcgctgacataaatgaaagccttcaaaaagatctgatttttttgt  10241300                                                                <---------MYB46(3)                                                                <------MYB83                                                                <------MYB46(1)                                                               <---------AtMYB61                                                               <---------DEAR3(1)                                                               --------->MYB111(2)                                                               --------->MYB55(2)                                                               --------->MYB111(1)                                                            <---------MYB46(3)                                                           <---------TOE2(3)                           =================RAV            <---------YAB1                           <-----------RAV1(1)           -------->HAHB4                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------MYB46(3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->MYB46(2)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<--------P                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB55(1)                          <---------TOE2(3)              <---------ICU4               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->YAB1              ----------->RAV1(2)                       --------->ICU4              =========================RAV    <---------ANAC55(1)              <---------TGA1a   <---------ANAC46        <---------ATHB51             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------ICU4      --------->CCA1(2)           ----------->HVH21  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <---------ANAC46          xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ICU4xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ARR14(2)--------->AHL20(2)  <---------ARR14(2)   =======================RAVxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB46(3)   <-----------RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ARR14(2)  <---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------TOE1(3) ---------AHL20(2)  <------ZmHOX2a(1)    *TSS <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------->DOF2 =======================bZIP_DOF<-----------RAV1(2)  <---------AHL20(2)----------->GT1   --------->ATHB12   atttaatgttgttctgacctgaggaatttatgttgcaggtatggagttacctgtattaattatggttggtgagtggatatacaaagaagaatgtttgaaa  10241400                                                              --------->ARR14(2)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           --------->ANAC55(1)                                                           --------->ANAC58                                                           --------->ANAC55(2)                                                           --------->ANAC58                                                           --------->ANAC46                                                          <---------LBD16                                  --------->ANAC55(2)     <-----------------AG                                  <---------ANAC55(2)     <-----------------AGL1                                 ------->TEIL            xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------HSFB2a(1)            <-------TEIL                  <---------ARR14(2)                    <---------REM1(2)                 <---------HSFC1(2)                   <---------SPL7           <---------ANAC55(2)          ---------->DOF2--------->HSFB2a(1)         <---------ANAC46 --------->ANAC58   --------->At4g35610  --------->SPL7               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ZAT2--------->HSFB2a(1)               ------->GAMYB      --------->ANAC58  <-----------GT1   <---------At4g35610  <---------TOE1(2)       --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ZAT2--------->HSFC1(2)          --------->ANAC46 <---------ARR14(2)    <---------RVE1(1)  ------->TEIL   <---------HSFB2a(1)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC55(2)<xx   tatgaagctgagaaaaggaagtttcggacgttctgtacgtattacagacacaacgacgtacacggatttggcaagtacaatatgtgatattttcagtttc  10241500                                         ---------->DOF2                                      --------->LBD16                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <---------LBD16                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <-----------GT1   --------->ARR11(3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC58                    --------->YAB1  <---------ANAC46        <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->GLK1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR11(3)--------->ANAC58   --------->ARR11(3)   <---------ANAC46<---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->AHL20(1) <---------ZAT14 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->DEAR3(1)xxxxxxxxxxx   aagtttagtgaatggaaccctataataagttactggatgcctggaaagatgtctgatatgatagcaagtaatcgccctccagtatatattgagaatcaaa  10241600                                   <---------HSFC1(2)                                   --------->HSFB2a(1)                                   --------->HSFC1(2)                                  <------ZmHOX2a(2)                       --------->ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------ANAC55(2)<---------MYB52(1)                       --------->YAB1------>ZmHOX2a(1)                  <---------YAB1 --------->ARR14(2)             --------->ZAT6              <---------TOE2(3)  <---------ARR14(2)            <-----------------AG        <-------TEILxxxxxxxxxxxxxxxx>smallRNA(i)               <-----------------AGL1--------->AtLEC2      --------->ARR14(2)       <---------ANAC58               <-----------GT1   --------->ANAC58  xxx xxxxxxxxxxxx>smallRNA(fl3)    <---------ANAC58           <----------DOF2       --------->ANAC58 ----   tcagcctggatacatttatgttgattcgtaatggcgatccttctgttaacttgtttgtgtctttttactctatcggcaagggaggccatacagagacaga  10241700                         <---------ICU4                        --------->ICU4                      <---------ICU4                <------ZmHOX2a(1)                     <---------TOE1(1)                     --------->ICU4               <---------TOE2(3)                       <---------TOE2(1)                     <---------YAB1   --------->AHL20(2)                                <------ZmHOX2a(1)                   --------->YAB1     <---------AHL20(2)                    <------ZmHOX2a(1)               ------->TEIL         --------->CCA1(2)                     <---------TOE2(3)   <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ARR11(3)                   --------->ICU4 <----------ID1 ------->GT1  <---------CCA1(2)    --------->ARR11(3)          <---------REM1(1) ------->TEIL -------   ggttacaaatgttgatgtatctcataatttttacgaagatataaatgtagatgaggatgacatagatgaaggtgatgaggatgaatatgaggacgaggat  10241800  Previous    Next  AGI:  At5g28263.1    Description:  transposable element gene. Mutator-like transposase family, has a 4.6e-72 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 10241341    to: 10256535    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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