Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                 --------->At4g35610                                                <---------AGP1                                                --------->ARR14(2)                                                --------->GLK1(2)                                                <---------ARR14(2)                                                --------->ARR11(3)                                                <---------ARR11(3)                                 <-                                  --------->ARR14(2)        -------->ATHB1                         --                                  <---------ARR14(2)        <---------ICU4                     ------                                  <---------GLK1(2)         --------->YAB1                --------->ETT(2)                        --------->ANAC58       <------ZmHOX2a(1)                 <-----------GT1  --- ------>ANAC58          --------->ANAC58       <---------GLK1(2)              --------->YAB1  ------- ------>ANAC58      --------->ANAC58        <---------LBD16<---------ATHB12  <---------YAB1  <------- ---ID1             --------->ANAC58  <---------YAB1     --------->WOX13(1)----------->GT1<---------ETT(2)   aagaaaaccatcaacaatagctaagcaagcacatcggattctcataccaggatctgaaacaatcattctcttcaacattgtaataacccctatcgacggt  10182500                               ---------->DOF2           <----------DOF2                <---------ICU4    ------>ZmHOX2a(1)      --------->At5g28300           <---------DAG2               <---------ANAC55(2) --------GLK1(1)          --------------->AGL15         <---------DAG2                --------->ANAC55(2) ------->GLK1(1)          <---------ZAT6          --------------->AtSPL3           <---------GLK1(2)x --->At5g28300            <---------------AGL15  <---------ZAT14                   <---------ARR14(2) -------->ARR10           ----------->GT1        --------->ZAT14        --------->TOE2(3)           - ---->GT1       --------->ANAC58                ------>ZmHOX2a(1)       --------->TOE1(3) <---------YAB1 --DEAR3(1)     --------->ANAC58           <----------DOF2      <<<<<<<<<TBF1      --------->ARR14(2)   gaaatcctcttcaaggccaaacaacttactgtaaaaaggaatcgtctttcctgcagtacctttttcttcttcatcgttaaactcagatacttatcacagg  10182600                                                                                             --------                                                                                             <-------             ------>ZmHOX2a(2)                  --------->TOE1(2)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ARR11(3)              --------->ALFIN1      <---------ARR14(2)  --------->AtMYB61           --------->ARR11(3)          <-----------RAV1(2)       --------->ARR14(2)<---------ATERF1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB52(1)          <-----------ARR10 ------>NtERF2 -------->GLK1(2)         ---------->DOF2  <---------REM1(1)    <---------CCA1(2) <---------ALFIN1XXX   gtaatctggtgatgatcttgaactctctcaaagaaaaacgaacaggtgtaccagcgaatagcatccaaatctcgctaggcttagccacctccaactatct  10182700                                                       ------->GAMYB             --------->AHL20(1)                                   <------ZmHOX2a(1)  <-----------RAV1(2)        <---------ARR11(3)         <---------ICU4  ------>NtERF2<---------MYB46(3)  <---------ANAC58   ---------->DOF2      --------->YAB1    <---------ZAT18               --------->MYB46(3)  --------->HSFB2a(2)     --------->AHL20(2) --------->ZAT18     ===================================HOX2a_HOX2a --------->WRKY38(1) ->ARR11(3)           --------->At4g35610   <------ZmHOX2a(1)    ---------->DOF2 --------->ARR11(3) --ARR11(3)          --------->MYB52(1)   --------->MYB59 <---------ANAC58<---------HSFB2a(2)    <--- XXXXXXXXXXXXXXXXXX>MIR828  <-----------RAV1(2)     ----------->RAV1(1) <------ZmHOX2a(2) --------->DOF5.7(2)   ttccaaaataaaaattccaaaactagcggaccaggcaggattgttaggaaactccaacaggcgagcgaaaagagatcgagaaagatattgtcgttcacca  10182800                                                                                           --------->LBD16                                                                                          ------->GAMYB                                                                         --------->ANAC46<---------LBD16                                                                     <-------TEIL   --------->ANAC58                                                                    <---------ARR14(2)  -------->P                                                              <------NtERF2         --------->ANAC58                    --------->LBD16                           ------>NtERF2        --------->WOX13(1)                    <---------ZAT14                           --------->LBD16   --------->ANAC58               --------->ARR11(3)                            --------->DEAR3(1) --------->ANAC58               <---------ARR11(3)                         --------->ANAC46    ---------->DOF2      --               <---------ARR14(2)                 <-----------GT1   <-----------ARR10<---------ATHB12 ------YAB1    --------->ARR14(2)      <---------YAB1------->GAMYB  --------->ARR14(2)  --------->MYB52(1)   tcatcgagagcattgaagataccgcagagggttttcatcttctgatacacattaaccctctcgccgcgaggttcttcgccaaaagcaatcaaccggagag  10182900                                        <---------STY1(1)                              <----------ID1                              ----------->GT1       --------->ANAC58               <------NtERF2 ----------->GT1        --------->ANAC55(1)         --------->At4g35610--------->DAG2          --------->ANAC58 --------->ANAC58  *TSS    ---------->DOF2        <---------ALFIN1 --------->ANAC58  --------->ETT(2)   --------->TOE2(3)      <---------REM1(1)         --------->ALFIN1 -------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46----------->GT1   <------ZmHOX2a(1)   ggaaaggaatcagaggcatcgtctacagaaaaaggaaaaaccctagtgagacacacgcaagagatgtagagggaaacaaaatcacagaggagggactaaa  10183000                                                                                                    -                                                                                                   <-                                                                                                   <-                                             ----------->GT1                                       --                                      ---------->DOF2                                              --                                 --------->GLK1(2)                                           >>>>>>>>           --------->DAG2        <---------ARR14(2)     --------->TOE2(3)                <------ZmHOX2a(1)          ---------->DOF2        --------->ARR14(2)<---------ICU4          <-----------------AGL3  --     ========================================================================================MADS_MADS     ----------------->AG       <---------CCA1(2) <---------YAB1  <-------TEIL   <---------LBD16 ----   atcgattacccaaaaagtcgaatgaacaaaacccaaatctgaaagagaggttataatttcttaatcgattcatttcatctattttcggagaggaagaaga  10183100             <---------GLK1(1)                                                       --------->AHL20(2) -------->CCA1(2)                                                                --------->AHL20(2) --------ARR14(2)                                                        <---------ANAC58 --------ARR11(3)                                 <---------ALFIN1       <---------ANAC55(1) ------->ARR11(3)                                --------->LBD16         --------->ANAC55(2) ------->ARR11(1)                        <---------ICU4                  <---------ANAC58        <--- >TBF1 --------->GLK1(1)                 --------->ATHB51      --------->ANAC46  <---------AHL20(2) ------->ARR14(2)            --------->TOE2(3)  --------->ANAC46         <---------ANAC46        ---- ------->ARR10  <-----------GT1       --------->YAB1  --------->YAB1 <----------DOF2 <---------AHL20(2)   agatatgagaaatcgatttctcaattcgaaaccctagtattcataatttcccccaattttaaaacacagaactttgcgtgtttttaatttaaaacgtttt  10183200             <-----------RAV1(1)  <----------TaMYB80  --------->KAN4(1)        <---------WOX13(1) <---------KAN4(2)       --------->ATHB12                                                     <------ ---------->TaMYB80     --------->AHL20(2)                                                    ------- ------TOE2(3)  <---------MYB46(3)<---------WOX13(1) ---------->DOF2                          ------- ----->MYB59------->TEIL<---------AHL20(2)          <------ZmHOX2a(1)                    --------->AHL20(2)   aggtatattcgatgaatgttgttggattaattggtaattgatgcttcacatagaggaaagggttatgggttctaatctccaattttgcaaaaaaaataaa  10183300                                                  ------->MYC3                                                  <-------MYC2                                                ------->TEIL                                             --------->AtLEC2                                             <---------YAB1                                          --------->ICU4                                        <-----------bZIP910(2)                                       --------->TGA2(2)                                      <-----------TGA1                                     --------->ANAC58                                     <---------ANAC55(2)                                     --------->ANAC55(1)                                     =====================================MYC_MYB                                     --------->ANAC46             <---------ALFIN1                                     <---------O2 <-------MYC3   --------->At4g35610         --------->ANAC58            --------->O2 ------->MYC2   <---------ZAT2         --------->ANAC46            --------->ANAC55(2)         --------->ZAT2 --------->WRKY45         --------->ANAC58            --------->ANAC58            <---------At4g35610         <----------ID1              --------->TGA1a           ---------->CDC5  --------->WRKY38(1)  --------->TOE2(3)                  --------->bZIP60(2)  xxxxxxxxxxxxxxxx>smallRNA(s) ---AHL20(2)                         <---------TGA1a   <---------TOE2(1)     --------->ALFIN1     <-- -->AHL20(1)                        <-----------STF1   <---------TOE1(1)--------->MYB52(1)   <------- -->AHL20(2)                       <---------ALFIN1   --------->SPL7   ----------->HVH21   <---------MYB46(3)   ataacattaagacgacatatcaaaacatcgtttagagacacgtcatcatgcatgtgtacgatgactcagcaccgtaacggtgttgactaacatcggttag  10183400  Previous    Next  AGI:  At5g28200.1    Description:  transposable element gene. pseudogene, hypothetical protein, various predicted proteins, Arabidopsis thaliana Range:  from: 10180096    to: 10182919    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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