Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->YAB1                                                <---------YAB1                                              -------->HAHB4                                              <---------ICU4          --------->HSFB2a(2)                ---------->DOF2               --------->YAB1          <---------HSFB2a(2)         --------->AHL20(2)                  --------->ICU4       <---------DAG2         <---------AHL20(2)                  <---------YAB1       <----------DOF2         --------->AHL20(1)                <---------ICU4   ----------->HVH21            --------->AHL20(2)    --------->AHL20(2)                     --------->YAB1 <---------ZAT2                 <---------AHL20(2)  ----------->GT1                         --------->ICU4  <---------At4g35610     <---------ICU4  --------->ANAC58                        <---------ATHB51--------->At4g35610  --------->YAB1  --------->ANAC58                   ----------->GT1      --------->ZAT2      <-------TEIL     <-----   aaacaagaaaataaaatagaaagagactagatttagagagagaaataatgatgatagtgaagctgacactttctgcaagtttcataagtattttattctt  10128600                    --------->AHL20(2)                    <---------AHL20(2)            <---------ICU4                --------->ICU4        --------->ANAC58             <---------WOX13(1)      <---------AHL20(2)<---------AHL20(2)     --------->YAB1   --------->ICU4                -------    <---------AHL20(2)  --------->AHL20(2)    <---------YAB1    <---------YAB1         <---------ANAC58 -----DOF2 ----------->GT1            --------->ANAC58 <-----------GT1<---------GLK1(2)<---------ANAC58   ttctatattttttctgtaaaaattaaaaaattgcaattgctcgaaattttcataatttttcgagttatgatggattcttgtagttgaaggcttgaagcat  10128700                                                                       ------->TEIL                                          =========================HOX2a_HOX2a                                          ------>ZmHOX2a(2)           <---------CCA1(2)                                        --------->ARR11(3)        >>>>>>>>>ARR2                                        <---------ARR11(3)      <---------TOE2(3)    ----------->GT1                   <---------YAB1            <---------YAB1    <------MYB46(1)                 <---------ICU4          <------ZmHOX2a(1)    <------MYB83                    --------->YAB1        <---------TOE2(3) -->YAB1     ---------->DOF2       --------->ICU4   <---------YAB1>>>>>>>>>ARR1                ------   gacatttggttaaacaaaagcatagcatttttggaccatcatgatctctagattactattgaggataagattgtatcttatgcgataagtttgaatccta  10128800                                       --------->ARR11(3)                                      <---------CCA1(2)                                <---------ANAC58                                               ------                                <------MYB83                                                   ------                                <------MYB46(1)                                            --------->ANAC58                                <---------ANAC58                                           --------->ANAC58                                <---------ANAC46                                          --------->DAG2                               <---------MYB46(3)                                     --------->YAB1                               --------->MYB46(2)                                <---------ZAT14                         <---------TOE2(3)                                       --------->ZAT14                         <---------TOE1(3)                                       --------->ZAT18          <---------TOE2(3)    --------->MYB111(1)                       --------->ICU4  ---------->DOF2 >ZmHOX2a(1)<------ZmHOX2a(1)  <---------AtMYB61               --------->AHL20(2)<---------ZAT18   gttgtatatgtttaggaatcgacatttaagggtttggtgtttatcttgtgttgattccctcttgtataaatagcaatgttgagttcactaataaagcaag  10128900                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                     --------->CCA1(2)                                    <---------ARR14(2)                                    --------->ARR11(3)                                    <---------ARR11(3)                                    --------->ARR14(2)                        <---------ZAT14       --------->ARR11(3)           <---------AGP1                                             <-----       <---------ARR11(3)       ---------->DOF2                                               ------>ZmHOX2a(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                              <----------DOF2      <-------- --->ANAC58         <---------------AtSPL8                           ---------->ID1         --------- --->ANAC58      <---------REM1(2)  --------->AGP1                  <-----------GT1<------------CBF   tcagttcgatatctaattctacatggtacagagctaaagatctagcaaaaaaaaaaaaacatctaaattttttcttttttttatcgattgtttcgatctt  10129000                                                              <---------bZIP60(2)                                                              <---------ANAC58                                                              --------->bZIP60(1)        <---------ANAC46                                      <---------O2        <---------ANAC58                                      --------->TGA2(1)        <---------ANAC58                                      <---------TGA2(1)        <---------AtLEC2                                      --------->O2            <---------YAB1        <---------ANAC55(2)                                   <---------ANAC46     <---------ARR14(2)        <---------ANAC55(1)                                   <---------ANAC58    <-------GAMYB -----        --------->ANAC55(2)                                   <---------bZIP60(1)--------->MYB55(2)    <---------ANAC58                                         ----------->STF1    <---------MYB46(3)    <---------ANAC58      *TSS                    --------->REM1(1)   ------>ZmHOX2a(1)         <---- -----DOF2     --------->ANAC58         <---------MYB46(3)  <---------TGA2(2)  <---------MYB52(1) -ARR11(3)     --------->ANAC58        <---------YAB1      ----------->TGA1   --------->LBD16<------- >ARR11(3)----------->HVH21 <------NtERF2  <-------TEIL  --------->YAB1     <---------LBD16  <-------   tgtttttcttgcgtgacaagaaaacatggcatcgatagatgatggttcatctacaacaaggatgacgtcttcctcgtctccggtggttacgatgggcgtt  10129100                                        ------>ZmHOX2a(2)       --------->TOE1(3)       --------->ARR14(2)  <---------ANAC46       <---------------AGL15  =================HOX2a_HOX2a       --------->TOE2(3)      ================HOX2a_HOX2a       --------------->AGL15  <------ZmHOX2a(1)  <---------ANAC46       <---------DAG2       --------->LBD16     <---------AtMYB61      ----------------->AG <---------LBD16    <-----------RAV1(1)  <----------DOF2       --------->ARR14(2)  --------->At4g35610  <---------DAG2        --------->GLK1(2)   ----------->RAV1(2) ---->ARR14(2)          <---------ARR14(2)  <---------At4g35610     --------->YAB1 -----ARR14(2)     <---------HSFB2a(2) <------ZmHOX2a(2)     ----------->HVH21            <---------YAB1 --ANAC58          --------->HSFB2a(2)--------->ARR11(3)    --------->At5g28300         <---------At4g35610 --ANAC58       <---------ARR11(3)    <---------ARR11(3)   ----------->GT1         <---------LBD16   tctcctttaccttatcaagttctgaaaatccaggaactacgatctcatctgtggtgttgaacggtgacaattacaacgaatggtcttcggagatgataaa  10129200                                                                  ------>ZmHOX2a(1)                                                                 <---------MYB59                                                                ------>ZmHOX2a(2)                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                             --------->YAB1                                                   <-----------HVH21                                      ------>ZmHOX2a(2)      -------->HAHB4             --------->ANAC58        <------ZmHOX2a(2)      <---------ATHB12                       --             --------->ANAC58        ====================================HOX2a_HOX2a               <-             --------->ANAC46       <---------ARR14(2) <---------At4g35610                        <--      --------->ANAC46              --------->ARR14(2) --------->At4g35610                        <--      --------->ANAC58         --------->MYB52(1) --------->TOE1(3)                     --------->At5g28300      --------->ANAC58    <-------TEIL===================================HOX2a_HOX2a <---------------   cgctctccaagctaaacgcaaaatagggttcatcaacggatcgattccaaaaccttcagctaatgatcctaattttgagaattggatggcagtgaattca  10129300                <---------SPL7               <---------ANAC58               <---------ANAC58              --------------->AtSPL8            <---------GLK1(2)          <------MYB83                                                               --------->ARR14(2)          <------MYB46(1)                                                            <---------ARR14(2)        <--------P<---------TOE1(2)                                                  <---------ARR11(3)       <-------GAMYB                                                                <---------HSFB2a(1)       <---------ANAC46                                                            ----------->ARR10      <------MYB46(1)                                                          <---------HSFB2a(2)      <------MYB83--------->SPL7                                            <----------DOF2--------->ANAC58      ----------------------->TaNAC69(2)                                  ------>MYB83--------->CCA1(2) ------->YAB1 <-------TEIL   ------->TEIL                                 ------>MYB46(1)  --------->ANAC58 -------ATHB1 <---------------AtSPL3                                   <-----------------AG--------->ANAC46 -------ATHB12--------------->AtSPL3    --------->GLK1(1)              <-----------------AGL1 -------YAB1--------->ARR14(2)     ----------->GT1        <---------At4g35610  --------->HSFB2a(2) ------WRI1 <---------ARR14(2)    --------->DAG2     <----------DOF2 --------->ANAC46--------->ARR11(3)   atgatagtgggttggattcgtacgtctatcgaacctaaggtgaaatctacggtttctttcatctccgattcacaccaactttgggaagatttgaagcaac  10129400                                                                                            <--------                                                                                           --------->WRKY18(1)                                                                              <---------HSFB2a(2)  --                                                                              --------->HSFB2a(2)  <-                                                                             <---------LBD16<--------                                               <---------SPL7              --------->ARR14(2) -------                                               --------->TOE1(2)           <---------ARR14(2) <------                                              ------>ZmHOX2a(2)         <---------ICU4<-----------GT1              ---------->DOF2                <------ZmHOX2a(2)         <---------ATHB12   <----------     --------->LBD16               ---------->DOF2              <---------RAP2.6(2)  <---------YAB1--    <---------ANAC46             <---------ATHB12<---------TOE1(2)   --------->WOX13(1)<---------At5g28300   <---------LBD16     ------------------------>ANAC81         --------->RAP2.6(3) <---------ICU4  <-   gtttctccgtgggaaacaaagtgagaattcatcaaatcaaagcacagatcgcacgatgtcaacaagacggccaatcagttctggattattacggtcaact  10129500  Previous    Next  AGI:  At5g28145.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.1e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 10129026    to: 10133680    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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