Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------MYB52(1)                                    --------------->AGL15                <----------DOF2                                   <---------YAB1                      --------->At4g35610      <----                      <-----------HVH21                                --------->ZAT2          ------            --------->MYB46(3)  <------ZmHOX2a(2)                   <---------At4g35610       -------           <---------At4g35610 <---------ARR11(3)                   --------->At4g35610  ------->TEIL       <-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tctcacctaagtcagccactggattgtcacctagatcaccattagtagccaactcttggtcattgtattcagcagctttgtataactcatgaatttcctc  10064300       <---------WOX13(1)     <--------ATHB1     --------->ATHB12     <---------ICU4                                                     <---------ANAC46     -------->ATHB1                                                    <---------At4g35610    <---------ATHB51                                         <------ZmHOX2a(2)    <---------YAB1                                  <---------------AtSPL8    <---------ATHB12                                <---------------AtSPL3    --------->ANAC58    --------->ICU4                --------->At4g35610     xxxxxxxxxxxxxxxx>smallRNA(s) -----ICU4                    <-----------HVH21  --------->ICU4  <----------DOF2 >ZmHOX2a(1)           <---------GLK1(2)       --------------------->WRI1     --------->ANAC58 -->TOE2(3)      <----------DOF2  <---------At4g35610 <---------SPL7   <---------ZAT2   attccaatgattgacttccctttcacattctccatcagctactgagtctccatgatggtaccgatcactttgcagcttgtaagcctcatccatccctctc  10064400                                       --------->ANAC46                                          ----                                 <---------MYB46(3)                                             -----                                --------------->AtSPL8                                      ---------                                --------------->AtSPL3                                     --------->RAP2.3(2)                                <---------AtMYB61                                          --------->ANAC58                             <---------AtMYB61                                             --------->RAP2.6(2)                           <---------ANAC58             <---------AtLEC2                   --------->ANAC58                          --------->ATHB12              <---------ANAC46                   --------->ANAC46               --------->bZIP60(2)  <---------ZAT18     <---------ANAC58             ------>ZmHOX2a(1)               --------->ANAC46 <---------------AtSPL8  <---------ANAC58       --------->ARR11(3)----             <---------ALFIN1--------->ALFIN1  xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ARR11(3)<---             --------->AtMYB61<---------MYB46(3)    <----------DOF2           <---------CCA1(2)------          --------->AtMYB61<---------ANAC58 --------->ANAC46        --------->ARR11(3)---------->DOF2         --------->MYB46(3)<---------ANAC46 <---------YAB1          <---------ARR11(3)xxxxxxxxxxxxxxx   gttacaagatgaccaccacatcactacttgagtggtggtacacattacgacagtctttgcttggacatattatcttatctatatctcctaaagccgcaac  10064500                             --------->YAB1                       <---------ALFIN1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             --------->TOE2(2)             <---------At4g35610 ----->AtMYB61   <---------HSFB2a(2)       --------->At4g35610 ---->MYB46(3)   --------->HSFB2a(2)    <------ZmHOX2a(2) >LBD16      --------->TOE1(3)         <---------ARR14(2) --->GAMYB  <---------HSFB2a(1)        --------->ARR14(2)         ----------->GT1 ------ALFIN1--------->TOE1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)    --------->DAG2     --------->ANAC58 -->P       --------->HSFB2a(1)    <---------LBD16  <---------ATHB12             --------->ANAC58 xxxxx>smallRNA(se3)<---------ALFIN1  <------ZmHOX2a(1)      ---------->DOF2     --------->ANAC46   cacatcaaatacaaaccttcgagcacctctctcataaccaggatcagctcttcaatgaagaaataaagttgaaaaaaaaactcaagcaatgttctaaacc  10064600                                     <---------ANAC58                                     <---------ANAC58                                --------->ATHB12                           <---------YAB1                 <---------ANAC58                           --------->AHL20(1)             <---------ANAC58               ------>MYB83--------->AHL20(2)             <---------bZIP60(2)      --------->TOE1(3)               ------>MYB46(1)  <---------ICU4         ----------->HVH21           --------->TOE2(3)          <-----------GT1  <---------AHL20(2)      --------->ANAC58      *TSS     ----------->GT1   <        --------->AHL20(2)<---------AHL20(2)       --------->ANAC58   --------->AHL20(2)     --------   --------->AHL20(2)     --------->AHL20(2)      ------->TEIL      --------->TOE2(3)        --------   <---------AHL20(2) <---------AHL20(2)        <-------TEIL     ----------->RAV1(1)      <----------  --------->AHL20(2)  --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->At4g35610   ccaatttaaattaaacctatctatataattttattgattacctgcatagatgcacccatgacttgtccaacattatatgttataagcttaaaaaacctta  10064700                           ------->GAMYB                        ----------->RAV1(1)              --------->YAB1<-----------HVH21 ---------TOE2(3)--------->YAB1                                                        XXXXXXXXXXXXXX ->TOE1(3)    --------->TOE1(3)              ------------>CBF<---------ARR11(3) --------->YAB1 ->TOE2(3)    --------->TOE2(3)   <-----------HVH21          --------->ARR11(3)<---------YAB1 -GT1 <------------CBF --------->MYB46(3)   ----------->RAV1(1)                xxxxxxxxxxxxxxxxxxxxxx   ttaagatgaattgaaaccataatcaacaacagtcacagtcacagagcaacaattcgagtaagagaacttatcagacaacttatcatgaagagccaactta  10064800                                              <-----------HVH21                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                            <------NtERF2                                           ------>NtERF2                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          --------->ARR14(2)                                        <---------ATERF1(1)                                        --------->LBD16                                      <---------LBD16                                    --------->ARR14(2)                                    <---------ARR14(2)                                   --------->GLK1(1)                                   <----------TaMYB80                                  <---------ARR14(2)                                  ---------->TaMYB80                                  --------->ARR14(2)                         <-----------GT1                                --------->LBD16<---------MYB52(1)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               --------->RAP2.6(2)xxxxxxxxxxxxxxxx>smallRNA(i)                          ---------->DOF2 <---------ARR14(2)      <------MYB46(1)                    --------->At4g35610--------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)                --                   <xxxxxxxxxxxxxxxxsmallRNA(i)----------->HVH21  <------MYB83                   <---            <---------MYB46(3)<---------LBD16 <-------GAMYB       ----------->GT1             <------            ----------->GT1--------->DAG2--------->ATERF1(1)   <---------MYB52(1)     <---------ALFIN1 XXXXXX>MIR841     --------->ANAC46<---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2 x>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------DAG2   aactgaacacatagtggttatacgctgaaaaagccggatatccggctccgttacagggctaatccatttggttattcatttacaacatccacttttttac  10064900                                                              --------->YAB1                                                              --------->ATHB12                                            <---------ALFIN1  <--------HAHB4                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <---------ICU4           <---------ICU4                        -                                    <---------YAB1           --------->ICU4                        <x                                    --------->ICU4         --------->YAB1                       <----                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         -----                                  <---------ICU4         <-----------GT1               xxxxxxxxxxxxxx                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxxxxxx                               --------->bZIP60(2)--------->ANAC46                  <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------>MYB46(1)                    --------->AHL20(2)          --------->ANAC46     --------->ANAC46  ------>MYB83<---------YAB1        <---------AHL20(2)        <---------ALFIN1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------AHL20(1)     --------->ANAC46        <---------ALFIN1  --------->AtMYB61                   --------->AHL20(2)   <-----------GT1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------AHL20(2)  -- ------->AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----------DOF2<-----------GT1 -------DOF2       xxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <------- -----GT1 --------->bZIP60(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------YAB1  <xxxxxxxxxxxxxxxxx   ttttaatactccacatcatcttctctctcttccacatcattattcaacacctacacaattttcatcattacaatactttgtttaataaaattacaacacc  10065000                                                                          <---------ICU4                                                                       -------->ATHB1                                                                       <---------ICU4                                                                       --------->ATHB12            <-    ------>NtERF2                                                      --------->YAB1             <--   <---------ALFIN1                                                   <---------ATHB12            ---   --------->ANAC46                                                   <---------YAB1              <-- -------->ANAC46                                                      --------->ICU4          ------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                --------->WOX13(1)   <---------AHL20(2) -----DAG2                           <---------YAB1               <---------YAB1         --------->AHL20(1) ---->AtMYB61                       <---------TOE2(3)          --------->AHL20(2)        --------->AHL20(2) xxxxxxxxx>smallRNA(i2)       <---------AHL20(2)               <---------YAB1<-----------GT1  <------ xxxxxsmallRNA(le3)           <---------AHL20(1)           <---------ANAC55(2)           <---------AHL20(1) ------>P                     --------->AHL20(2)           --------->ANAC55(2)          --------->AHL20(2) --ALFIN1  <---------YAB1 <---------AHL20(2)         <---------YAB1 --------->YAB1      <---------AHL20(2) xxxxxsmallRNA(si3)      <---------AHL20(2)  <---------MYB52(1)<---------AHL20(2)  --------->YAB1 ---   ttaccccaccattttcatttcatattttttattttatttatgtttctgtttttttgtgattacatattattaatcattgttactatcaaattaaatttaa  10065100                          --------->AHL20(2)                         <---------AHL20(2)          <---------AHL20(2)                                   --------->AHL20(1)          --------->AHL20(2)                                   <---------AHL20(1)   <---------AHL20(2)    --------->AHL20(2)                    --------->AHL20(2)  --------->AHL20(2)    <---------AHL20(1)                   <---------AHL20(2)  <---------AHL20(2) --------->AHL20(2)                      --------->AHL20(1) --------ICU4 --------->AHL20(1)                             <---------AHL20(1) -------ATHB51--------->AHL20(2)                          --------->AHL20(2) ------>AHL20(2)  --------->YAB1                      <---------YAB1 -------AHL20(2)  --------->AHL20(2)               <---------YAB1 <---------AHL20(2)    --------->YAB1 -->AHL20(2)  <---------AHL20(2)                 <---------AHL20(2)                  --------->YAB1 ---AHL20(2) <---------AHL20(2)    <---------AHL20(2)<---------AHL20(2)             --------->AHL20(2) ------>ICU4 --------->AHL20(2)    --------->AHL20(2)--------->AHL20(2)    <----------DOF2   ataattaaatattaaaaaaattataaaataattttgttttaatatttgtttttatttttataaaatattttaaaaaacttttacaaataataaaaacgag  10065200  Previous    Next  AGI:  At5g28056.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 10059204    to: 10064673    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version