Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------At4g35610                                --------->At4g35610                             ---------->DOF2                                  <----------DOF2                       ------>ZmHOX2a(1)                                   --------->ARR11(3)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                         <---------ARR11(3)                     <---------HSFC1(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------HSFB2a(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     --------->HSFC1(2)                           <---------ARR14(2)            <---------ZAT18 <---------MYB52(1)                    --------->GLK1(2)        <---------AHL20(2) <-------GAMYB   --------->CCA1(2)      <---------ARR11(3)      --------->TOE2(3)======================HOX2a_HOX2a          --------->ARR11(3)      <----------DOF2--------->HSFB2a(1)  --------->ARR11(3)      <---------ARR11(1) <---------MYB52(1) <------ZmHOX2a(2)     <---------ARR11(3)      --------->ARR14(2)               <x ------At5g28300   --------->ARR14(2) ------>ZmHOX2a(2)          <---------CCA1(2)       --------->MYB52(1) ----->HVH21xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-------TEIL   <---------ARR14(1)   --------->YAB1   accgttttctttaatggactcgatccttccgttaagctgatcgagatatagattcatacaagatagcaaatcttgaaggtcttttgcatcataacgatac  9992400                                                               --------->At4g35610                  =                                 xxxxxxxxxxxxxxxx>smallRNA(i) --------->RAP2.6(2)        <----------DOF2                          --------->YAB1                    --------->ZAT2         ------------------                     <<<<<<<<<ARR2                          --------->At4g35610    <xxxxxxxxxxxxxxxxx                     <---------ATHB12 xxxxxxxxxxxxxxxx>smallRNA(i)                 <----------DOF2  -                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)             --------->REM1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------GLK1(2)   <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)----------->GT1   <---------ZAT2 --------->MYB52(2)  xxxxxx xxxxxxxxxxxxxxxsmallRNA(i)--------->TOE2(3)          <-----------ARR10 <----------DOF2 <---------ANAC58   tgggacattttgccttcaacacaatcaaacataaatcgtctaacctgtaattctcggttctcagcagccaaattctttagttgctcttttgctttggtaa  9992500                                                                                                    <                                                                                                    x                                                                                                   --                                                         --------->GLK1(1)                        <--                                                         --------->At4g35610                <xxxxxxxx                                                         <---------At4g35610                ------>MYB83                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ------>MYB46(1)                                                    --------->ANAC46                      --------->AtMYB61                              --------->At4g35610  <------NtERF2                          xxxxxxxxxxx                              xxxxxxxxxxxxxxxx>smallRNA(i)   <---------HSFB2a(2)         --------->HSFC1(2)                            --------->YAB1         <---------LBD16                       --------->HSFB2a(1)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->LBD16            <---------HSFB2a(1)                         --------->WOX13(1)        --------->At4g35610                  <xxxxxxxxxxxx                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------LBD16             <xxxxxxxxxxxx                        ------>ZmHOX2a(2)          <---------At4g35610         <---------DAG2    ----             <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->LBD16           -------->P<xxxxxxxxxxxxx ==============================HOX2a_HOX2a     <---------SPL7--------->HSFB2a(2)<----------DOF2  ---- ----->TaNAC69(2) <---------ANAC58             <-----------HVH21<---------GLK1(2)   <xxxxxxxxxxxxxxxx xxxxxxsmallRNA(i2)     ===================HOX2a_HOX2a<------NtERF2       <---------At4g35610   <xxxx ----->ZmHOX2a(1) <---------ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(i) --------->At4g35610<------- xxxxxxxxxxxxxxxxx>smallRNA(i2)     ------>ZmHOX2a(1)------>NtERF2  <----------DOF2 <-----------GT1<x   tcctctccataagatgggtttcttgatccatcatcttcctggttcgggctgtccgcggcatctccagaaactttgaagctacctttttagcaccttccct  9992600             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------HSFB2a(2)            --------->HSFB2a(2)            <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------LBD16           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ----------->HVH21    <xxxxxxxxxxxxxxxxsmallRNA(i) ------>NtERF2 <---------ARR14(2) ---------RAP2.6(2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->ANAC46 ------->RAP2.6(3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         < -------WRKY18(1)                                --------->ZAT2                               ------- xxxxxxxxsmallRNA(i)                            --------->ANAC58                              ------- xxxxxxxxxxxx>smallRNA(fl3)                <---------ZAT14 ----------->RAV1(1)                <------ xxxxxxxxxxxsmallRNA(i2)                   --------->ZAT18--------->ANAC58                    ------- xxxxxxxxxxsmallRNA(i2)                    <---------ZAT18--------->ANAC58                    <------ ----->WRKY12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------- xxxxxxxxsmallRNA(fl3) <---------YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <------- ------->HVH21xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58                       <---------ANAC58 xxxxxsmallRNA(i2)  <---------MYB52(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------ANAC58 xxxxxxxxxxxxsmallRNA(i)    --------->ZAT18<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->GLK1(2) ----------AGL1--------->ARR14(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)  ----------->HVH21 <---------ANAC46   tgacggccatgactctggaaccggtatgaatggactatagatgagagcacaagcttggacaccacatagagttgacaactcgtggagtttcttgaatatc  9992700       =================================HOX2a_HOX2a       ------>ZmHOX2a(1)    <-----------GT1    ---------->ID1   <-----------GT1                <----------DOF2 ---------MYB52(1)             --------->ARR11(3) -->ARR11(3)                   <---------ARR11(3) -->KAN4(2)                <---------ANAC58 ---ARR11(3)               <---------ANAC58                <-----------GT1 -->ARR14(2)               --------->TOE2(3)    ---------->DOF2 ---ARR14(2)      <------ZmHOX2a(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --KAN4(1)        ======================HOX2a_HOX2a      <---------DAG2          <---------ARR11(3) --GLK1(1)      <---------TOE2(3)------>ZmHOX2a(2)       <----------DOF2    <---------ATHB12        <   ccgtttttcctcttcatgaaggatgttttccttgatctttcattagctatcaaagatagctttaccttcttcatccccatcaatatgtttttttgttttg  9992800             --------->AHL20(2)             <---------AHL20(2)       <---------ANAC46                                                                           <--     <---------MYB46(3)                                                                <---------ANAC46    <---------AtMYB61                                      <---------AHL20(2)         <---------AtMYB61  <---------ANAC46                                        --------->AHL20(2)         xxxxxxxxxxxxxxxx  <---------ANAC58                   <-----------TBP  <---------YAB1                <----------DOF2  <---------ANAC58                   --------->AHL20(2)   <-----------TBP--------->ARR14(2)       ---  <-----------RAV1(1)            ----------->GT1 ---------->DOF2         <---------GLK1(2)<---------ZAT18 ---------ANAC46           ---------->DOF2   ---------->DOF2            <------ZmHOX2a(1) --------->ZAT18   ttttgtgtggtttgtttaatttgtttactcaaagaatgtttatatagcaaagaaagatgattttatagtcactaggattcttatcactttggtggactca  9992900                                                                             <-----------GT1                                                                        <---------AHL20(1)                                                                        <---------ARR11(3)                                                                        --------->ARR11(3)                                                                        --------->AHL20(1)                                            ----------->GT1      <---------AHL20(2)                                  --------->AHL20(1)             ----------->TBP                    <---------GLK1(1)     <-----------RAV1(2)  ----------->TBP                    --------->GLK1(1)<---------WOX13(1)   <-----------GT1  <---------AHL20(2)                  <------ZmHOX2a(1) <------------CBF    <---------YAB1--------->ARR11(3)               --------->HSFB2a(2)<---------AHL20(1)  <---------ICU4  <---------AHL20(1)               <---------LBD16    <---------AHL20(2)  <--------HAHB4  --------->AHL20(1)           -- -------AHL20(2) --------->ANAC46 --------->AHL20(2) --------->ICU4<---------AHL20(2)          <----- xxxxxxx>smallRNA(se3)       ------------>CBF        <---------YAB1--------->AHL20(2) ---------->DOF2 ------>AHL20(2)--------->LBD16--------->WOX13(1) <---------AHL20(2)  <---------ARR11(3)       <-----   ttaattctaaataacatccaggaaatctcttatcaattaattgaccaggtaattcattattatctatataaaaatattttttcttatctaaagtttggct  9993000                                                                             <---------AHL20(1)                                                                           <---------AHL20(2)                                                                           <---------AHL20(1)               --------->ARR11(3)                                         --------->YAB1               <---------ARR11(3)                                       --------->AHL20(2)              --------->CCA1(1)                                         <---------AHL20(2)              --------->RVE1(1)         <-----------ARR10               <---------AHL20(1)            --------->AHL20(2)          --------->GLK1(2)               --------->AHL20(1)       ------>ZmHOX2a(1)                <---------ARR11(3)        ----------->GT1<---------YAB1      --------->TOE2(3)                 --------->ARR11(3)        --------->ANAC58     ------>ZmHOX2a(2)          ----------->GT1                   --------->ANAC58 --------->RAV1(2) --------->At4g35610 --------->RVE1(1)        <---------ANAC46<---------AHL20(2) ----ANAC58 --------->YAB1      <----------ID1                 <------NtERF2 --------->AHL20(1) ----ANAC58<---------AHL20(2) ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cgtctgatcctaaataatatctgatgacaaaaaaaagaaaaaaatctatccatgtaatatgagggggcatgtaatataatatttttatttctaagttttg  9993100                                                           <---------ANAC58                                                           <---------ANAC58            <---------AHL20(2)                    <---------ICU4           <---------AHL20(2)                     --------->ATHB51           --------->AHL20(2)                  --------->YAB1      <---------TOE2(3)   <---------YAB1     <---------TOE2(3)  <----------DOF2                     -   tttatactaagaattaatttctcttactctcattgtttttttttactaagaataatttctagcttactttgttcttagaatgtgaagttttgtaatagtt  9993200                                         ------->TEIL                            --------->AHL20(2)               --------->AHL20(2) <---------YAB1           <----------DOF2  <---------ARR11(3)     <---------------AtSPL3 <---------AHL20(2)     <---------------AtSPL8 --------->ARR11(3)           --------->ANAC58                  --------->AHL20(2)     --------------->AtSPL8 <---------AHL20(1)           --------->ANAC58   ------------>MYB.PH3(2)   --------->ATHB12         --------->AHL20(1)         <--------P  <-----------GT1     ---------->DOF2 -------->ANAC55(2)   ----------->GT1  <<<<<<<<<EIN3<---------TOE2(3)    ---------->DOF2 ----------->GT1   ttaagtgattgtacttttaaaatacagtaatatattgtcaatgtatatagaattgtggtaagctagaaattactctaaagtttgttatctaaagtaaatt  9993300  Previous    Next  AGI:  At5g27960.1    Description:  MADS-box protein (AGL90). similar to AGL36, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G26650.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 9991689    to: 9992774    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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