Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ---------->DOF2                                                                     <---------At4g35610                                                                     --------->At4g35610                                                                <------NtERF2                                                                <----------CDC5                                                               ------>NtERF2                                                               <---------At4g35610                                                               --------->At4g35610                                                              <---------DEAR3(1)                                                             --------->ZAT18                                                             --------->ATERF1(1)                                                             <------NtERF2                                                            <---------ATERF1(1)               <------                                                            <---------DEAR4(2)               --------                                                            <---------RAP2.3(1)              --------                                                            <---------ORA47(2)               --------                    <-------TEIL                           <---------RAP2.3(2)              ---------                --------->ARR14(2)                         <---------RAP2.3(3)  --------->ANAC58                <---------ARR14(2)                         <---------DEAR3(1)   --------->ANAC46            ------->GAMYB                             <xxxxxxxxxxxxxxxxsmallRNA(s)    <-------TEIL           --------->ANAC58             <----------DOF2   --------->ATERF1(1) --------->CCA1(2)           --------->ANAC46       ---------->ID1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----------           --------->ANAC58      <-----------GT1   xxxxxxxxxxxxxxxx>smallRNA(i) --------->ANAC58   tagtcttgagacaacgcaaatattcatccatggtttttccttcttttgacaaaccatggagacggcgctgaagctcaaagacacgagatgcagagattcg  9982500                                                       <---------ZAT14                                                      --------->AtMYB61                                                      <---------ALFIN1                            ---                                                    -------->P                                   <xxx                                                   ------->GAMYB                              ------>NtERF2                                                  --------->MYB46(3)                         --------                   <-----------GT1                <---------MYB111(1)                   --------->ANAC58 -TEIL         --------->ARR11(3)                 <---------MYB55(2)                    --------->ANAC46 ->CCA1(2)------>MYB46(1)                         <---------MYB111(2)            ------->TEIL<------- ->ARR14(1)    <---------ARR11(3)            <------ZmHOX2a(2)    <---------ARR11(3)    --------->ANAC58 ->GLK1(2)-------->P               <---------ARR11(3) ------->GAMYB        --------->DAG2    -------- >ARR11(1)------>MYB83  <---------ALFIN1    --------->AGP1        --------->ARR11(3)  ---------->DOF2 >ARR10  ----------->RAV1(1)       --------->ARR11(3)--------->MYB46(3)   ---------->DOF2    --------   attgaaatgaccaacaagatttagccatacctcttgagatgttttagatccaacaaccacactgagaatgtcttcagaaagcgaacccagaagccacgcc  9982600                        --------->HSFC1(2)                        <---------HSFC1(2)                        <---------ZAT2                                                    --------->STY1(2)                        --------->ZAT2                                                 <---------ANAC58                       --------->ANAC58                                                <---------ANAC58                    <------NtERF2                                                     <---------MYB46(3)        <---------AGP1 --------->ANAC58                                           <---------AtMYB61        <---------ARR11(3)                                                        --------->ALFIN1 -------->HVH21    ------>NtERF2                                              --------->LBD16 xxxxxxxxxxxxxsmallRNA(s)                                                   <---------LBD16 ->ANAC46  ----------->HVH21          <---------ARR14(2)                   --------->MYB52(1)  <<<<<< --ALFIN1 ------>ZmHOX2a(2)<-------TEIL                <---------ANAC58   <---------ARR14(2)--------- ->ANAC58--------->At4g35610          --------->ARR14(2) ----------->HVH21--------->ARR14(2)<-------- ->ANAC58<---------At4g35610<---------ANAC46           <---------ANAC58  <------ZmHOX2a(1)<---------STY1(2)   ttgacaacttgatctgaacggtgccaagcttcgtagtctggatttgcaactgtatttgtgtgaccttcaatgtgaggaaccggaatggtgcttgctagaa  9982700                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <------ZmHOX2a(2)                                 <---------WRKY18(1)                              xxxxxxxxxxxxxxxxxxx                                --------->WRKY38(1)                  --------->At5g28300--------->YAB1       --------->MYB52(1)   --------->ARR11(3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <ZML2 -------->P           <---------ARR11(3)               --------->GLK1(1)  <---------ANAC58    - >HSFB2a(2)             ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ANAC58----- -HSFB2a(2) ----------->HVH21   --------->WRKY12        ----------->GT1    --------->MYB111(1) <-----   cagagatgctaccggtgacaaaaccaaaaagaccttgaccagagagaaacgattcaaactgtgatttccacagtaagtagttgcgatctataagagttac  9982800             <---------ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          -----------  --------->ANAC58                                                         --------->ARR11(3)  --------->ANAC58                                                         <---------ARR11(3)  --------->ANAC55(2)                                                      --------->ARR14(2) xxxx>smallRNA(fl3)           --------->ICU4                   --------->YAB1    ------->TEIL --------->DOF2           <------ZmHOX2a(1)                   <---------YAB1--------->CCA1(2)   ----- ---->ZAT6   --------->ARR11(3)           <---------AtLEC2  *TSS           <---------ARR14(2)   ----- ----At5g28300     <---------ANAC46<---------ZAT14    <---------AtLEC2     --------->ARR11(1)   <----   agtaacgcaatttgagatgtttagtggaggacatgagtaaacttccatggatttgtccatggctatgataccatgaagatatgaagcttagatggaaaaa  9982900                                                                                                   --           --------->AHL20(2)                                                         --------->TOE2(3)           <---------AHL20(2)                                                      ------->TEIL    <-   <----------DOF2                            <-------TEIL                         xxxxxxxxxxxxxxxxxx >GT1 <---------YAB1             <---------YAB1 <------------CBF              ------>MYB46(1)      -- ---->ARR11(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               ------>MYB83     <----- ---->GLK1(2)   <---------AHL20(2)           <<<<<<<<<<<<<<<<<LFY           <---------MYB59    <----- -----ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <-----------TBP --------->TOE2(3)  --------->ATHB12   tctttcttttgattttatttcattcagcctattttgtgattacaacgatacattggttttatagtttctatttcttaacctaatgtatccttgatttgct  9983000                                                                                ------->TEIL                                                                                --------->ARR14(2)                  <-------MYC2                                               --------->ANAC55(2)                  <-------MYC3                                               <---------ANAC55(1)                  ------->MYC2                                               <---------ANAC55(2)                  <-------PIF5                                               <---------ANAC58                 <---------ANAC58                                            <---------ANAC58                 <---------O2                                        <-----------HVH21                 --------->O2                                       <---------bZIP60(1)                 =====================================================MYC_MYB<---------ANAC46                 --------->ANAC55(2)                                --------->bZIP60(1)                 --------->TGA1a                               <---------ANAC58 --------->GLK1(2)                 <---------TGA1a                               <---------ANAC58 <-----------ARR10                 <---------ANAC55(2)                           <---------ANAC46<---------ARR14(1)                 <---------ANAC46                             --------->MYB52(2)<---------ARR14(2)                 <---------ANAC58               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->YAB1               <xxxxxxxxxxxxxxxxsmallRNA(s)<-----------TGA1         --------->YAB1                 --------->GLK1(2)   <---------ARR14(2) <---------CCA1(2) ------->ZAT2    <---------bZIP60(2)  <xxxxxxxxxxxxxxxxsmallRNA(s) ---------->ID1 --------At4g35610------->PIF5      --------->ANAC46        --------->ARR14(2)--------->LBD16  <----- xxxxx>smallRNA(si3)                --------->ANAC58     <------------MYB.PH3(1)<---------ARR11(1) ------->At4g35610------->MYC3      --------->ANAC58   --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx ----ANAC58 <---------ICU4     --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------YAB1   tagctgtctattgataatcacgtggcatagctatcatcacacaatctgagagcgtcgtaacggttccttgtcgtcacttccgtatctgatgatacagatt  9983100                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <-----------RAV1(2)                              <---------ANAC46                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <---------ANAC58                                                             x                    ---------->ID1<--------P                                                       xx        ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  ----      <---------ARR14(2) --------->MYB52(2)                                                    <xxxxx      --------->ARR11(3) =================RAV                                                  <xxxxx      <---------ARR11(3) <-----------RAV1(1)                                                <--------      --------->ARR14(2) <---------MYB46(3)                                               xxxxxxxxxxx  <---------At4g35610  <---------ANAC46          <---------At4g35610  <---------GLK1(2)  <---------ARR11(3)  <---------ZAT2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2                  <---------ARR11(1)  --------->At4g35610  <---------ANAC58    <---------AtLEC2         <---------MYB59      ------->TEIL ----WOX13(1)     <-----------RAV1(1)   <---------MYB52(1)<---------AtMYB61             <---------CCA1(2) xx>smallRNA(i)   ========================RAV <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxx   gctctgctgatcttctgtatttgtcgcttgttgcaggtagccgttgtatggagatgagctttggtgaagaccgaatcgcattgggcttctgtatcttttg  9983200                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           <---------ARR11(3)           --------->ARR11(3)           <---------AGP1--------->ZAT2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ID1--------->AGP1<---------At4g35610 xxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->AHL20(2)                            <---------ARR11(3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)                   <---------YAB1    --------->YAB1 --DOF2---------->DOF2   <---------ZAT2                   --------->YAB1        --------->ARR11(3) xxxxxxxxxxx>smallRNA(le3) ----------->GT1    --------->YAB1         --------->YAB1   ----------->RAV1(1) xxxxxxsmallRNA(si3)     --------->At4g35610 <---------YAB1  --------->YAB1    <---------GLK1(2)   gcccatttgcaaagatctatcgttttgagctgtgattttatttgagtatcataaacccaaaaatcatacaagtataatacaaaatctccaacaataaaca  9983300                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     ------>MYB83                                                                     ------>MYB46(1)                                                                     ================================                                                                     -------->P                                                                     --------->MYB52(1)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    --------->MYB55(1)                                                                   <---------MYB111(1)                                                                   <---------MYB111(2)                                                                   --------->DEAR3(1)                            ------>ZmHOX2a(2)                      --------->MYB46(3)                       <---------HSFB2a(2)                         --------->AtMYB61            -----                      <---------LBD16                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------LBD16                               <---------MYB55(2)           xxxxx               <-----------GT1 <---------MYB52(1)                  <---------MYB46(2)     ---------->DOF2              --------->AHL20(2)   <---------YAB1                 --------->MYB46(3)      ===========         <---------AHL20(2)<------ZmHOX2a(2)                    <-----------GT1         --------->AtMYB61        --------->AHL20(2)<---------ARR14(2)               ------>ZmHOX2a(1)      <-----------GT1<---        <---------AHL20(2)--------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3)      --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------->RAV1(1)   agtttgaatattaatttttaatattcgggatccgtttatttttgggaacaaattcaatttcctatttcaccaaccagattgaattcaccaccaaaagaga  9983400  Previous    Next  AGI:  At5g27947.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.3e-188 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 9979371    to: 9982860    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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