Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->ANAC55(1)                                                                      --------->TGA1a                                                                      ===============================                                                                      ==============================MYC_MYB                                                                      ==============================MYC_MYB                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                      --------->O2                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)                                                                      <---------O2                                                                      <---------TGA1a           <----                                                                  <---------ALFIN1           <-------                                                                <-----------HVH21            <------MYB46(1)                                                                ------>NtERF2                <-------                                                               --------->RAP2.6(2)           <------MYB83                                  ---------->DOF2              <---------ATERF1(1)          <--------                             ----------->GT1                   ------>NtERF2                ---------                             <---------DEAR3(2)                --------->DEAR3(1)        <------MYB46(1)                             <------MYB83                    <---------At4g35610         <------MYB83                             <------MYB46(1)                 <---------ATERF1(1)        --------->MYB52(2)                             <---------MYB46(3)              --------->ATERF1(1)        --------->MYB59         ----------->GT1    --------->MYB59                  --------->At4g35610    <---------bZIP60(1)       ------->TEIL         <---------AtMYB61                <------NtERF2        <---------TGA2(2)    --------->ANAC58       <--------P                        --------->LBD16     ----------->HVH21    <---------ANAC55(2)  <------MYB46(1)                    <---------ATERF1(1)  ----------->TGA1    --------->ANAC46    --------->MYB111(1)                <---------LBD16     <---------At4g35610    --------->ANAC58    --------->MYB52(2)              --------->ANAC58   <---------ANAC46<--------P    --------->ANAC55(2) --------->MYB59                 --------->ANAC58 ------->TEIL   --------->MYB111(1)    --------->ANAC55(1) --------->MYB46(2)         =============================MYC_MYB --------->MYB46(2) ------->ANAC46         <---------AtMYB61          ------->GAMYB<------NtERF2  --------->At4g35610  - ------->REM1(1)       <---------MYB55(1)         --------->MYB46(3)  --------->ANAC58 <---------MYB55(1) ----->P <---------ANAC46<------MYB83           ----------->RAV1(1) <---------ALFIN1--------->bZIP60(1) --->MYB46(1)         <---------MYB52(1)       --------->MYB46(3) ----------->RAV1(1) <---------MYB52(1) --->MYB83           <-------GAMYB==============================================bZIP_DOF<---------AtMYB61   tacaacacgtatcgtagatagagcgttaggttggttcaaagctctctcaacaacagccaagcccgcggccacacgtatcgtagatgacgttaggttggtt  9924800      <--------P    ----------->GT1                                                                           <------ --------->DAG2                                                                           <---------LBD16 ==========bZIP_DOF                                                                  <---------ANAC58 ---TEIL                                                                             <---------ANAC58 --DEAR3(2)                                                       ----------->GT1   <---------ICU4 --MYB46(3)                                    --------->DAG2 <---------TOE2(3)  --------->WOX13(1) -AtMYB61                              <---------KAN4(2) ------->TEIL           <---------WRKY38(1) >MYB59 ----------->GT1     <----------DOF2   ---------->DOF2 <---------TOE1(3)--------->WRKY18(1) --------->DOF2  --------->ZAT6     ----------->GT1--------->ATHB12           <-----------HVH21------   cataaagggtaagttactaacacaatgttactttggtatggaataaacaaaagtgattgtacctaaggttgtaaaaccagggtcaatccttgcacgggtc  9924900                                  <---------At4g35610                                  --------->ZAT2                                  <---------ZAT2                                  --------->At4g35610                       <---------At4g35610                                   <--------HAHB4                       <---------ZAT2                                        --------->ATHB12                       --------->ZAT2                                        <---------ICU4   --------->ARR11(3)  --------->At4g35610                                   --------->YAB1 -----HVH21       --------->At4g35610                  --------->YAB1       <---------ATHB12 --->WRKY18(1)    <---------At4g35610           <----------DOF2           --------->WOX13(1)  -------   aagagggtcttgacgacttcatctcagctcatgtacagctgaagacacatctttctatcaaattttggacctgcatcaatcatttagaaaatgttttctt  9925000    --------->ATHB12    --------->ATHB51                                                                           xxxxxx    -------->HAHB4               --------->ANAC58                                              ------    <--------ATHB1               --------->ANAC58                                             <------NtERF2    <---------ICU4               --------->ANAC46                                            ------>NtERF2   <---------ATHB12           <---------REM1(2)                    <-----------GT1           <-------   --------->ICU4  --------->ANAC58                            ------>ZmHOX2a(1)             --------   <---------ATHB51--------->ANAC46                      <---------ICU4                     ---------   --------->AHL20(2)    <---------------------WRI1   <---------ICU4                        ---------   <---------AHL20(2)---------->DOF2                  --------->YAB1 --------->ZAT6         --------- -->TOE2(3)        --------->ANAC58     ---------->DOF2 <---------YAB1                  <-----------GT1   aacaaataattgaaaacttacaagaaagtctatacacacaaaaaaagaatagttcatcatcattcctcttaactctattaaacgaggttttaacgcgccc  9925100                                                                 <---------At4g35610                -                                                                 <---------ZAT2            --------->PCF5                                                              <---------At4g35610          --------->PCF2                                                              ------>NtERF2              <------MYB46(1)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At4g35610        <------MYB83                       ---------->DOF2    --------->ANAC46   --------->RAP2.3(2)         <---------DEAR3(2)                  --------->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->MYB59                  --------->GLK1(2)   <-----------HVH21      <---------DEAR3(1)         <---------AtMYB61                  <---------ARR14(2) --------->ANAC46        --------->DEAR3(1)         <---------MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ARR11(3)          --------->RAP2.3(1)         --------->MYB111(1) --->RAP2.3(3)<---------TOE1(2) --------->GLK1(2)          ------>NtERF2              <-------GAMYB-- --ZAT18   <---------ANAC58     <-----------ARR10          <---------At4g35610       --------->MYB55(2) ->ZAT18   <---------ANAC58     --------->ARR11(3)   <<<<<<<<<TBF1    ------>ZmHOX2a(1)<--------P  -- >ANAC58   --------->TGA1a ----------->GT1--------->ANAC58 --------->LBD16           --------->ATHB12 >ANAC58   =======================bZIP_DOF--------->ANAC58--------->ANAC46           <---------MYB46(3) >ANAC46   <---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ATERF1(1)<---------MYB52(1)   tcaattgtttctctcgtgcgattccgaaagcgaaaatctaggtcaccccattttcttcttccgccgctgctcctagtctcgttcccttggttggtccctc  9925200            <---------ATERF1(1)          <---------GLK1(1)         <---------PCF2        <------MYB83                                           ------>NtERF2        <------MYB46(1)                                       --------->DEAR3(1)       <---------MYB46(3)                                    --------->ATERF1(1)       --------->MYB55(2)        ---------->DOF2            <---------ATERF1(1)      --------->ALFIN1       <----------ID1                 ------>NtERF2      <--------P            ----------->GT1                <---------ALFIN1                         -     <---------MYB52(1)   --------->DAG2                   --------->ANAC46<---------LBD16          -   <---------MYB46(3)   ---------->DOF2                    --------->DEAR3(1)                      -- ----->NtERF2 <-----------------AGL1                      --------->ATERF1(1) <---------MYB52(1)  <xx --------->HVH21       *TSS----------->GT1               ------>NtERF2<---------GLK1(2)         <---- ------->DEAR3(1)----------->HVH21                       <---------ATERF1(1) --------->LBD16    <----   gccgactggtgggtctcccccgatgggaaaggggaaaaagcctcttcgcccaattgtgcctccgcctcccaaaattctccgtgatgctcccagtaaatcg  9925300                                                             <---------PCF2                                                    --------->ALFIN1                                                  <---------ANAC46                                                  <---------ANAC58                          <---------RAP2.3(1)     <---------ANAC58                         <---------ANAC46       <------MYB83 <---------ARR14(2)                         <---------RAP2.6(2)  <--------P     --------->ARR14(2)          <---------GLK1(2)                   --------->ALFIN1         <---------HSFC1(2)                  <-------GAMYB  <------NtERF2         --------->HSFC1(2)                <---------ANAC46 --------->ATERF1(1)                    --         --------->At4g35610              <---------LBD16  <---------MYB46(3)                      <-         <---------At4g35610 <----------DOF2 <---------MYB52(1)                                   <xx   ---------->DOF2      <---------LBD16   ----------------->AGL1        <-------GAMYB       <-------- -------->ANAC58   --------->ARR11(3)   --------->ARR14(2) <---------ATERF1(1)         <---------At4g35610 -------->ANAC58  <---------At4g35610   <---------ARR14(2)<---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->WOX13(1) --------->At4g35610 <---------MYB46(3)  <---------ANAC58   <-----------GT1--------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->MYB55(2)  <---------ANAC58<---------MYB46(3)--------- -------TGA1--------->At4g35610 <----------DOF2 <------MYB46(1)  ------>ZmHOX2a(1)<----------DOF2 >>> -------HVH21  <---------At4g35610<---------AtMYB61 ----------->HVH21----------->RAV1(2)    <--------   tcactcaaagcagcttctgcagctcttgcggcttctttggtggttccggttggggtgaaggcgggtccttcgcctgttgttactctttccgctctgctcc  9925400     <------MYB83     <------MYB46(1)                                                       ------->TEIL    <---------MYB46(3)                                                   --------->ZAT14   --------->ALFIN1           <---------ANAC46                           <---------ZAT14 --------------------->WRI1 <---------ANAC46                          ----------->RAV1(2) ------->ZAT14            <-------GAMYB                             ------>ZmHOX2a(2) --------ZAT14           <-----------RAV1(1)                       <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------GLK1(1) -At4g35610      --------->ARR14(2)                               --------->ARR14(2) >ZAT2           <---------ARR14(2)                               <---------ARR14(2) >At4g35610      <---------GLK1(2)                             <---------HSFB2a(2) >>>>>>>>>>>>>>LFY--------->GLK1(2)                            --------->HSFB2a(2) -ZAT2         <---------TOE1(2)                              <---------LBD16         --------->LBD16   ctccagtgggtatttcgcagaatctctctgttgtggagaaaactctccctcttcttcggcttcttctggatcccctgtacttggtttcccgattgaaaat  9925500                                                            <------NtERF2                                                           <-----------TGA1                                                           <---------RAP2.6(3)                              --------->HSFB2a(1)         <---------bZIP60(1)                              <---------HSFB2a(1)         --------->bZIP60(1)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            ---------->DOF2               <---------TGA2(1)                         <---------HSFB2a(2)              <---------ANAC58                         --------->HSFB2a(2)              <---------ANAC58                      <---------PCF2                <---------ARR14(2)                      --------->PCF5                --------->ARR14(2)                      --------->TCP16(1)         --------->ALFIN1                        <-----------HVH21              <-----------RAV1(1)              <---------bZIP60(2)                   ------->TEIL              <---------MYB46(3)               <---------ANAC58                 <---------ZAT2     --            <---------At4g35610                <---------O2<-----------HVH21    <---------At4g35610--            --------->At4g35610                <---------ANAC46                 --------->ZAT2     <-            <---------ZAT2--------->LBD16      <---------ANAC58         <---------MYB46(3)         <-  --------->ANAC58   <---------TCP16(2)   <---------At4g35610         <---------MYB52(1)--------->ANAC46  --------->ANAC58 <---------AtMYB61     <---------ZAT6   <---------ANAC46      --------->At4g35610--   aggcaagtctcttcagctgttgtggtcccagaaagtccctctactgctaacgtggttctggcgtcatgtccccttggttcagagctgaacccgtcccttg  9925600                                                                    <---------MYB46(3)                                                                    <------MYB46(1)                                                                   <---------MYB46(3)                                                                  <---------MYB52(1)                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                   <---------MYB52(1)        <-------TEIL                              <-----------HVH21<---------AtMYB61       --------->ALFIN1                       --------->ARR14(2)<-----------RAV1(1)     <---------ANAC58             <---------ZAT18<---------ANAC55(2)<------MYB83     <---------ANAC58       =======================RAV  --------->ARR11(3)    <---------DEAR3(1)      ----------->RAV1(1)  <---------ANAC46<-------GAMYB   <---------ANAC46      ------>ZmHOX2a(1)    <---------ARR14(2)<---------MYB46(3)                 <- --------->ALFIN1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------At4g35610            <------- ------->At4g35610     ----------->RAV1(2)<---------MYB52(1)  --------->At4g35610     <---------ZAT2 --------->RAV1(2)     =================RAV<--------P   <---------ARR11(3)          <---------ALFIN1 --------At4g35610  ------>ZmHOX2a(1)  <-----------RAV1(2)   <-----------RAV1(1)   <xxxxxxxxxxxxxxxxx --------ZAT2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)----------->RAV1(2) ------->ZAT2      <---------ALFIN1   <------NtERF2--------->WRKY18(1)        ---------->DOF2<-------   cagctgggggtgcatcaagctcctctcctgcaacagtggcctcaggtagttccgtcaaggtctctgctgttggtgactcagaaagcccacctgttaatgt  9925700  Previous    Next  AGI:  At5g27905.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.6e-35 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 9925223    to: 9930415    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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