Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                 --------->ICU4                xxxxxxxxxxxxxxxxxxxxxx                                                 <---------ATHB51              xxxxxxxxxxxxxxxxxxxxxx                                          <------ZmHOX2a(1)           --------->ARR14(2)                                        <---------TOE1(3)             <---------ARR14(2)                                  --------->ARR11(3)         xxxxxxxxxxxxxxxx>smallRNA(i)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ARR11(1)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ARR11(3)              --------->MYB52(1)  <---------ARR11(3)        --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <-----------ARR10           <--             <---------ATHB51    <---------CCA1(2)--------->MYB52(1)  --------->ARR11(3)     <-------        ----------->GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------CCA1(2)     --------->ATHB12 <---------AHL20(2)     --------->YAB1  <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---   tattttaagaaggaaataatggataaacatcatctatatcttaaggaagaaataatggataaacatcatccatatcttatggatagagatgaatgatgga  9872800      <-------TEIL                                                                     --------->CCA1(2) xxxxxx>smallRNA(si3)                                                                 --------->ARR11(3) xxxxxxx>smallRNA(fl3)                                                         <---------ICU4 xxxxxxxxsmallRNA(se3)                                                         --------->ATHB51 xxxxxx>smallRNA(se3)                                                          --------->ATHB12 xxxxx>smallRNA(si3)                                                          --------->ICU4 xxxxx>smallRNA(se3)                                                          <---------YAB1 x>smallRNA(se3)                                  <---------YAB1            --------->YAB1 x>smallRNA(le3)                               --------->ICU4              ------>ZmHOX2a(1) x>smallRNA(fl3)           --------->ZAT6      <---------YAB1          --------->ARR14(2) -------ICU4      --------->LBD16       --------->YAB1<---------TOE1(2)<---------ARR14(2)<-----------GT1 --WOX13(1)       ----------->GT1     --------->AHL20(2)          --------->YAB1      <---------ARR11(3) ------>YAB1    <---------LBD16   --------->YAB1<---------ICU4   <---------ATHB12   <---------TOE2(3)   taatgacatccatacttatccggtttataacactgatcaaaataataccattattctacgttctctaatcgtgaatcctcataattgagatatacagttt  9872900                                                            <---------------AGL15                                                            --------->YAB1                                                            --------------->AGL15                                                            --------->TOE2(3)                                                            --------->TOE1(3)                                                           ----------------->AGL3                                                           ----------------->AGL2                                                           ----------------->AG                                                           ----------------->AGL1                                                           <-----------------AGL3                                                <---------AHL20(2)                                               <---------AHL20(1)                                               <---------AHL20(2)              <---------AHL20(1)                                               --------->AHL20(2)              --------->ARR11(3)                                           --------->AHL20(2)                  --------->AHL20(1)                                           <---------AHL20(2)                  <---------AHL20(2)                               <---------YAB1  --------->AHL20(1)        ----------->GT1                        --------->ANAC46--------->AHL20(2) <-----------------AGL2                --------->YAB1<---------AHL20(1)--------->AHL20(2)   ---------->DOF2         ------>ZmHOX2a(2) <---------AHL20(2)     --------->ANAC55(1)<---------AHL20(1)    ---------->DOF2             ========   tattttttctgaagacaataatctacacttaatatacttgaataaaaaatttatttgtcttaccataaaaagaaagagtaaaatattgattttgatctca  9873000            ------->GAMYB         <-----------GT1                                                     --------->DAG2         --------->MYB52(1)                                                 ---------->DOF2--------->TOE1(3)    --------->YAB1       ----------->GT1                                  --------->ARR11(3)  <---------ARR11(3)   <------ZmHOX2a(1)   <-----------------AGL2 --------->DAG2           --------->TOE2(3) =============================HOX2a_HOX2a<----------DOF2         ---------->DOF2    ----------->TBP   acaaaatcatataaccgaagccgaaggatgtgaaacaaatgggcttctagtttgggcccaaatagcctaaagcgaagataaagcccataaaaacctaaaa  9873100             <-----------RAV1(1)                                                         --------->LBD16             <---------MYB46(3)                                         --------->At5g28300           <---------ANAC58          --------->TOE2(3)            ------>NtERF2          ------>NtERF2           <---------ANAC58          --------->TOE1(3)           --------->RAP2.3(3)    --------->DEAR3(1)           <---------ANAC46   --------->YAB1                  --------->ANAC58          --------->ANAC46       <---------ANAC58      <-------TEIL                     --------->ANAC58       ------>ZmHOX2a(2)       <---------ANAC58  --------->AHL20(2)                --------->DEAR3(1)       <---------GLK1(1)      <---------ZAT2    ----------->TBP                 *TSS  --------->ANAC46     <---------ARR11(3)      --------->ZAT2  ------>ZmHOX2a(1)              ------>ZmHOX2a(1) ----------->GT1 <---------LBD16   tgtaagcgagcttgcttgttgctcctataaattcataaaccctaacttcgttttcctctcgcagacgcagccatggtaaattcttgatctccgcctctca  9873200                                                             <---------ANAC58                                                ------>ZmHOX2a(2)                                                ==================================HOX2a_HOX2a                                              <---------ARR11(3)                                         --------->ZAT2      <---------ANAC58                <-----------GT1          <---------ZAT2      <---------ANAC46           --------->ANAC55(2)        <---------ANAC58<------MYB83                                  <       <---------ANAC58               <---------ANAC58<------MYB46(1)        <---------TOE2(2)      -       <---------ANAC58           <---------MYB52(1)<--------P             <---------MYB52(1)    <---    <---------MYB52(1)       <-----------GT1  --------->ARR11(3)           ------>ZmHOX2a(1)  <------   atctccgtttcttatgtattacaaaatgaattctccgtttgcgagcttgatctagttggtttagcgtgtaatggttccttaggtttctgatgtttcgtta  9873300           <---------ANAC58           <---------ANAC46                              <------ZmHOX2a(1)           <---------ANAC58                    =================HOX2a_HOX2a                ------>ZmHOX2a(1) ---------ARR14(2)                           <---------ARR11(3)                       <---------At4g35610 -------->ARR14(2)  <---------YAB1           --------->ARR11(3)                   <------ZmHOX2a(1) ------TOE2(3)      <---------TOE2(3)<---------TOE2(3)<-----------RAV1(2)     ---------->DOF2     <-- ---MYB52(1)    <----------DOF2 <---------YAB1 ------>ZmHOX2a(2)            --------->AtMYB61    <---   tggatttgcatttgagtgttttatcgttgttgttattttagggtatcgatcttatcgcaggaggtaagagtaagaagaccaaaaggactgctcctaagtc  9873400            ---------->DOF2          --------->TOE2(3)          <---------MYB59  ----------->GT1      <---------ETT(2)    <---------TOE2(3)      --------->ETT(2)    <---------TOE1(3)                           <-------GAMYB -------At4g35610  <-----------------AGL1                <---------YAB1             --------->ATHB12 ------TOE1(1)  <---------GLK1(2)               <----------DOF2      <---------MYB46(3)  <---------TOE2(3)   cgatgatgtctacctaaagcttctcgtcaaggtaacaaatattgacatgtcttttacttatgtttctctgtctgttacattttggtttattgagatttgt  9873500                                                         --------->TOE2(3)                                                   --------->ANAC46                                                   ------->GAMYB                                              ------>ZmHOX2a(2)                                             --------->CCA1(2)                                            --------->AGP1                                            <---------ARR11(3)                                            --------->ARR14(2)                        <---------WRKY18(1) <---------ARR14(2)                        <-----------GT1     --------->ARR11(3)                      <----------DOF2      --------->GLK1(1)                  ---------->ID1           <---------GLK1(1)          <---------AHL20(2)  <----------DOF2<------ZmHOX2a(2)                    <----------DOF2          --------->AHL20(2) <---------MYB52(1) --------->MYB52(1)            --------->DAG2      <---------YAB1  <---------DAG2     <------ZmHOX2a(1)                  ---------->DOF2  --------   ttgtgtttttgataaattttgtagctttaccggtttttggtgaggagatctaacagcaacttcaatgctgtgattctgaaaaggcttttcatgagcaaag  9873600                                                          <----------DOF2                                        --------->ATHB12 ------>ZmHOX2a(2)                                       <---------YAB1  <---------ARR11(3)                                    <-------TEIL       --------->ARR11(3)             --------->ARR11(3)                          <---------ANAC46          <-------TEIL                    <-------TEIL                          <---------ANAC58       --------->HSFB2a(1)               <-----------GT1            <----------DOF2      <---------ZAT6  <---------HSFB2a(1)           --------->AHL20(2)  ---------->DOF2         <---------ANAC58       --------->HSFC1(2)          <----------DOF2 -->DOF2  ------>ZmHOX2a(1)  --------->REM1(2)   <---------HSFC1(2)    <---------CCA1(2)   tcaacaaagctcctctttcactctctaggcttgtagagttcatgactggcaaggttcgatctttttgagacccatctctctttatatacatcttgagtct  9873700  Previous    Next  AGI:  At5g27850.1    Description:  60S ribosomal protein L18 (RPL18C). Identical to 60S ribosomal protein L18-3 (RPL18C) [Arabidopsis Thaliana] (GB:Q940B0); similar to RPL18 (RIBOSOMAL PROTEIN L18), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G05590.1); similar to unknown [Populus trichocarpa] (GB:ABK93398.1); contains InterPro domain Ribosomal protein L18e; (InterPro:IPR000039) Range:  from: 9873156    to: 9874602    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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