Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC58 --------YAB1                                   --------->ANAC58                               ------ -----YAB1                                  <---------ICU4            ----------->RAV1(1)    <------- -----GT1                                   --------->YAB1         --------->ANAC46      --------->DAG2 --AHL20(2)            --------->MYB52(1)  <---------YAB1 --------->YAB1                ---------->DOF2 --YAB1   <---------------AGL15          --------->YAB1 ------>MYB46(1)             <---------ATHB12 -AHL20(2)--------------->AGL15   ----------->GT1       ------>MYB83 --------->ANAC46--------->YAB1 <   tattcatgttatccattttttgaaataacagaaaaatagaaaataatcataagaaaccaaacaaaatatacacaacaaaaaatcaaatcataaagcttta  9868000                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                 ----                      --------->YAB1                     --------->AHL20(2)              --------->ARR14(3)                     <---------ATHB12                 --------->YAB1                     --------->ARR14(2)                <------ZmHOX2a(2)               --------->TOE2(3)                        --------->ARR11(3) --->AHL20(2)  --------->ARR11(3)             ------->TEIL                               <---------ARR14(3) ---DOF2   ---------->DOF2                <---------------AtSPL3     ---------->DOF2     <---------ARR11(3) -------TEIL   <---------ARR11(3)---------->DOF2<---------MYB59 ----------->GT1          --------->GLK1(2)   aatacatataagtgaaagatcaaatcataaaactataaagacatgaagtacctaaaacataatatatgctaaaaagaaattcaaaatacaaaatcttcta  9868100                                                                                          --------->ICU4                                                                                         <---------TOE2(3)                                                                                      <---------AHL20(2)                                 --------->ARR11(3)                            --------->ANAC58                                 --------->ARR14(2)                        --------->ANAC46                                 <---------ARR11(3)                        --------->ANAC58<---------ICU4                                 <---------ARR14(2)                        --------->ANAC58--------->YAB1        <--------ATHB1          <---------GLK1(1)                         --------->WOX13(1) ---------ARR14(2)          ----------->GT1                             <---------ATHB12--------->YAB1 ------>TEIL  --------->AtLEC2  <---------CCA1(2)                 --------->ANAC58    <---------YAB1 -------->ARR14(2)   --------->TOE1(3)                      --------->AHL20(2) --------->ANAC58 ----->ANAC55(2)     --------->TOE2(3)            <---------AtLEC2--------->ANAC58   --------->TOE2(3)   cgtatttgaataattcatccaaacctaaaactgtatatctgttcacatatttgaatgaaaaatcaaataagcaaatcaagcaagaaatattaatgatgtc  9868200                                                                                <---------HSFB2a(2)                                                                                <---------TOE2(3)                                                                                <---------YAB1                                                              ---------->DOF2<---------ATHB51                                           <-------TEIL   ----------->GT1    <---------AHL20(2)      <---------AHL20(2)             --------->YAB1     <------------CBF  --------->AHL20(2)   tatgtgatttttttttttgtcaaactgatgtctatgtgatcaaaatgcataaatacaaaattgtaaaagctaagtataaattatggaagtaagaacatat  9868300                               --------->AHL20(1)                                          --------->ANAC58                               --------->AHL20(2)                                  <--------P                              --------->YAB1                                      <---------ANAC58                              --------->AHL20(2)                                  <-------GAMYB                          <------NtERF2                                           <---------ANAC58                         ------>NtERF2                                            <---------ANAC46                    <---------WOX13(1)                                           <------MYB46(1)                   <------------CBF                                              --------->ATHB12                  <---------ICU4                                                 <---------MYB46(3)                  <--------ATHB1                                                 --------->MYB52(2)                  --------->ATHB12                                               <------MYB83                  --------->ATHB51              <---------WRKY38(1)             <---------AtMYB61                 --------->ICU4<---------AHL20(2)                            ========================RAV                 <---------YAB1<---------AHL20(1)   *TSS                     <-----------RAV1(1)                 <---------AHL20(2)            ------------>CBF        --------->TOE2(3)   --------->ANAC58                 --------->AHL20(2)           <-----------HVH21     --------->MYB52(1)   <-----------RAV1(2)                --------->AHL20(2)    --------->ARR11(3)         --------->ANAC55(1)    <------ZmHOX2a(2)                <---------AHL20(1)    <---------ARR11(3)         <---------ANAC55(2) <------MYB46(1)    --------->YAB1-------->HAHB4     <---------CCA1(2)           --------->ANAC55(2) <------MYB83   <---------YAB1<---------ATHB51   <---------AHL20(2)           --------->ANAC46--------->MYB55(2)   aacttatgatatgttcaaaataattggcaccattatattatatctactggtcaattccatgtcgaacacataacgttgaatgttggttggatcaggcaat  9868400                                                                                         <------ZmHOX2a(2)                                                                            <---------ZAT14                                                                           =====================HOX2a_HOX2a                         <---------ANAC58                                  ==========================                  <----------DOF2                                 <---------YAB1        --------->ARR11(3)              --------->ZAT18       --------->bZIP60(1)     <---------ARR14(2)          <---------ARR11(3)              <---------ZAT18  <---------At4g35610          --------->GLK1(2)       ---------->DOF2             <---------ANAC58  --------->At4g35610          --------->ARR14(2)     --------->ICU4             <---------ANAC58  ----------->RAV1(2)         <---------GLK1(2)--------->ZAT14      <---             <---------ANAC46 ------->TEIL            --------->ATHB12     ------>ZmHOX2a(1)    <----      <---------YAB1     <---------ANAC58            <---------YAB1--------->YAB1--------->YAB1 -----   <---------ATHB12      <---------ANAC46<---------At4g35610<-----------ARR10  <---------RAP2.6(3)---   ggcaaatgatcaatagcgtgctttgttccctgcatctgaagtcatctacttggaaatgatagaatctgatcatcgtcctgcagtcataaagatcaaacga  9868500           --------->CCA1(2)   --------->ZAT14   <---------ZAT14 --------->ANAC46                                       --------->GLK1(2) ===HOX2a_HOX2a                                        <---------GLK1(2)                          --- ---ZmHOX2a(2)                            --------->AtLEC2                                       <--- -----ARR14(2)                       ------->MYC3    --------->LBD16                             <--- ---->ARR14(2)                       <-------MYC3   --------->HSFB2a(2)                       ------- ------>MYB46(3)                --------->CCA1(2)   <---------HSFB2a(2)                --------->YAB1   tccactgaacaaggtataaggccatttcaattcgatacacgtttatgcaaaattccagaatttgaagacgttgttcgtcgaagttggaataatagtatgg  9868600   <---------MYB52(1)               --------->ZAT18  --------->At5g28300           ------->TEIL  <-------GAMYB              <---------YAB1      ------>ZmHOX2a(2) <---------MYB46(3)        --------->GLK1(1)    <------ZmHOX2a(2)                              ------ ----------->GT1           --------->CCA1(2)   --------->ARR11(3)                             <------ --->NtERF2               <---------ARR14(2)   <---------ARR11(3)                             ------- ------RAP2.6(2)          --------->ARR14(2)  --------->GLK1(1)          --------->ZAT6  <---------MYB59 ------RAP2.3(3)     --------->MYB52(1)       <---------GLK1(1)     --------->YAB1   <---------SPL7 -->ALFIN1        --------->HSFB2a(2)  <---------At4g35610  ---------->DOF2      <---------DEAR3(1)--   gggctgttaatctgtctcttcaagaacggatatgaatgtgcagaagagagatctcatcttggaaaagaagtcataacactaattcggcgaaccgaattaa  9868700                                             ----------->RAV1(2)                                           --------->ANAC58    <---------YAB1                         --------->ANAC58                                         < ---->DOF2                               <---------ALFIN1           ---------->DOF2             <---- ---AHL20(2)                             --------->ANAC46       --------->TOE2(3)     <---------ANAC58 -->AHL20(2) <-------GAMYB         --------->At4g35610     <---------At5g28300        <---------ANAC58 --------->GT1        --------->LBD16  <---------ALFIN1   <-----------GT1    ----------->GT1    <----   agagttaacataggcgcttgataccgcaaacacagactgctacacacccctggctcaaattcacagcctcaaaagggatttgttaaatgcttacagggac  9868800                                                                     --------->ANAC58                                                                     --------->ANAC58                                                          --------->LBD16                                                         <---------ANAC46          <---------AHL20(2)                            <---------LBD16     --------->AHL20(1)           <---------MYB46(3)   --------->MYB52(1)  ----------->RAV1(1)------- ------ZmHOX2a(1)             --------->ATHB12   ------>ZmHOX2a(2)   --------->ANAC46         ------- -----TOE2(1)               --------->GLK1(2)   <------ZmHOX2a(2)  <-----------GT1            ------- -----TOE1(1)        ----------->GT1           --------->ARR11(3)<-----------GT1       <------ZmHOX2a(1)   gaggaaacatattaaaaattgaagagtaagaatcagtggctagatgagagatcgcgataccgggttttttcacgctgcaacaaaaaacaggattacaagg  9868900  Previous    Next  AGI:  At5g27845.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 6.6e-32 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 9868352    to: 9871840    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version