Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               ------>MYB46(1)                                                                                             ------>MYB83                            <---------ARR11(3)                                             ------->GAMYB                            --------->ARR11(3)                                          --------->MYB52(1)                           --------->RVE1(1)                                          <---------MYB52(2)                 <---------WOX13(1)            <---------ANAC58          --------->CCA1(2)--------->DEAR3(2)            --------->TOE1(3)                  <---------ANAC58         --------->AHL20(1)<----------    ----------->RAV1(1)    --------->CCA1(1)   <---------ANAC46         <---------AHL20(1)--------->MYB46(3) -------DOF2--------->TOE2(3)       --------->GLK1(2)   ---------->DOF2--------->AHL20(2)-------->P   ttttggcaacaaaaccctaattgactgaaatatctgagaatttgtaatagcttgggaataaagtctcaaacaaatatataagccgagaactaaccgactt  9842000                                  --------->AHL20(2)                                 --------->AHL20(1)                                 <---------AHL20(2)                      <---------LBD16           <----------DOF2       --------->AHL20(2)            <-----------GT1       <-----------GT1       --------->AHL20(2)               <-----------GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->ARR11(3)    <---------ICU4           <---------AHL20(2)  ----------->GT1        <-----------GT1    --------->ATHB51<-----------GT1   <-----------GT1      <---------ARR11(3)        ---------->DOF2 --------->YAB1 <---------AHL20(2)<---------AHL20(2)       <---------GLK1(2)   --------->YAB1 --MYB.PH3(1)  <---------AHL20(2)<---------AHL20(1)>>>>>>>>>GATA-1<----------DOF2<---------YAB1   cattcataatttccttttttattttctgtttttaatttatttacatcgaaatagataaaaagattttccttttttttcggattataagaaagactcatat  9842100                         <---------ICU4                         <--------HAHB4                        <---------YAB1                      --------->YAB1                      <---------ICU4                     --------->ICU4            --------->YAB1                                                     --------->YAB1            <---------ICU4                                                     ======================           <---------YAB1--------->YAB1                                        <------ZmHOX2a(1)         --------->YAB1 --------->ICU4           <-----------GT1              ----------->GT1  ---------->DOF2  --------->YAB1        ------------>CBF                <---------YAB1 --------->ANAC46   ataagaaagactcatgataactcataatcattttgtgctcgaattcaatattatccatttctatttctatatttgatgaaaggataatacacatctccat  9842200                       --------->ANAC58                       --------->ANAC58               --------->ANAC58               --------->ANAC58 --------->ANAC58             ---------->DOF2    --------->ANAC58         ------>ZmHOX2a(2) --------->ANAC58         ===================HOX2a_HOX2a   <------ZmHOX2a(1)     <-----------HVH21            <------- ---------->DOF2     <------ZmHOX2a(1)  <---------TOE2(3)    <---------ANAC58             <---------ARR11(3) ===============HOX2a_HOX2a--------->ANAC58                  <---------ANAC58             --------->ARR11(3)   taacaaagtgatccctcaagcgaggaagccagccaagttacttaggaatacttcaagagagaaccgtgtcagaatatagggcaaggtttgaagttctttg  9842300                                                                                              ------>MYB83                                                                                              ------>MYB46(1)                                                                                              -------                                                                                             --------                                                                                            <--------                  --------->LBD16                                                           <--------                 <---------LBD16                 --------->ICU4                             <--------                <---------LBD16       <---------RVE1(1)                                     ---------               -------->P            --------->ARR11(3)                                   ------>MYB83               <---------At5g28300   <---------ARR11(3)                      <---------ZAT6 <--------               --------->MYB52(1)    --------->ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ZAT14             <---------ARR14(2)                  <---------ZAT14  ------>MYB46(1)         --------->ZAT14           ----------->ARR10             <-----------GT1 ------------>CBF ---DOF2 <---------ZAT18          <------ZmHOX2a(1)   ---------->DOF2--------->ANAC46     -------->P<   tctgaattcagtgaacttaccgggacaaaacttagaggagatattcttacaaagattaaagcctaatttacaagctgtagtgatgcaattccaacctaac  9842400     --------->ETT(2) -->MYB52(1) ->MYB55(1)                   <---------ANAC46       <---------YAB1 -MYB111(1)           <<<<<<<<<<<<<<<<<LFY          --------->ARR11(3) -MYB52(2)      --------->ARR14(2)          <---------ZAT6                      ----------->RAV1(1) -MYB59      <---------WOX13(1)           ----------->GT1                     --------->ZAT18 >AtMYB61 --------->ICU4      <---------ANAC58      <---------ARR11(3)  <-------TEIL -MYB46(2)<---------YAB1      <---------ANAC58    --------->ICU4       --------->CCA1(2) ------------CBF<---------ARR14(2)  ---------->DOF2--------->YAB1  <------ZmHOX2a(1)    <---------LBD16   gggattgtagacatgatggatttggcacagtggcttgagaaagctagtgaaaatgatcatggaacaagaggagatacaagagcaccagtttcagggttta  9842500                                                                                            <--------                                                                                            <--------                                                                                           <---------ARR11(3)            <---------ZAT6                                          <---------WOX13(1)     --------->ARR11(3)            ----------->GT1                                        <---------ARR14(2)      <---------GLK1(2)       --------->ICU4              <---------AtLEC2   ------>ZmHOX2a(1)                  <---------TOE2(3)  ----------->GT1          <---------YAB1   --------->YAB1        <------NtERF2          ----------->ARR10 --------->ALFIN1       ----------->HVH21  <---------ATHB12    <---------LBD16       --------->At4g35610   gaggtggtaatgaagagttaatgtgtctgaccattgtgcaaggtaatcaagaggtccttagtataggcggattgatgaaaaacaataagctaagattttt  9842600                                           ------>NtERF2                                          --------->PCF2                                          <---------ARR14(2)                                    -----                                          --------->ARR14(2)                                ---------                                        --------->LBD16                                     <--------                                       --------->HSFB2a(2)                                 ----------                                    --------->DEAR3(1)                                     ----------                               <---------ARR14(2)                                         ------>NtERF2                               --------->ARR14(2)--------->ANAC58                      --------->At4g35610                               <-----------ARR10 --------->ANAC46              <-----------GT1 <-----                              <---------CCA1(2)  --------->ANAC58   <---------ARR14(2) <---------ZAT2                            <---------ANAC58   <---------MYB52(2)   --------->ARR14(2) --------->ZAT2       <---------LBD16      <---------ANAC58 ----------->RAV1(1)   <------ZmHOX2a(1)   <---------At4g35610 -RVE1(1)         --------->ANAC55(2) <---------LBD16            <---------TOE2(3)--------->TOE2(3) -CCA1(1)         <---------ANAC55(2)------>NtERF2               <---------TOE1(3)--------->TOE1(3)   tggttctatctcggagcatcaagtgtctgtgcgtatcgcctccggagccacaaacaacttcatgtctaaggatttggcaatttaccttaagctgccaata  9842700         --------->YAB1                                                                           ===         <---------ICU4                                                                           ---      --------->YAB1                  <------NtERF2                                              ====     --------->KAN4(1)                --------->ZAT18                     >>>>>>>>>ARR1          <---    <---------KAN4(2)               --------->ANAC58                      >>>>>>>>>ARR2         <---- ----->DOF2                         --------->ANAC58                    <---------YAB1          ----- ------>AGL15                       <---------DEAR3(1)                  <---------TOE2(3)       ----- -------AGL15                       --------->ANAC46             --------->LBD16                <---- ------->AGL3                      <---------ORA47(1)           <---------HSFB2a(2)             ----- ------->AGL1                      --------->RAP2.6(3)          --------->HSFB2a(2)            <----- ----ATHB12<---------YAB1      <---------------AtSPL3          <---------LBD16                -------   aaggagaataatcatgtttgagttgtattggggcatggacggcacaacgagagtttaggcaatgttctgggaataagattgttagtccaaggagttgaga  9842800             --------->TOE2(1)      <---------ARR14(2)      --------->ARR14(2)      --------->ARR11(3)      <-----------ARR10      <---------ARR11(3)     <------ZmHOX2a(1)   <---------TOE2(3) ===========HOX2a_HOX2a      ---------->DOF2 --->ZmHOX2a(2)       <---------ANAC46 ===========HOX2a_HOX2a --------->ALFIN1                                                      <------ ---ZmHOX2a(2)        --------->O2                                                          --------- -----ARR14(2)        <---------O2             --------->ARR11(3)                          --------->AHL20(2) ---->ARR11(3)        <---------TGA1a <---------At4g35610                                  <---------AHL20(2) ---->AGP1   --------->TOE1(1)     ---------->DOF2                                        --------->AHL20(2) -----ARR11(3)        ==================bZIP_DOF                                          <---------AHL20(2) ---->ARR14(2)    <---------HSFB2a(2) --------->At4g35610                              --------->AHL20(2) ----GLK1(1)--------->HSFB2a(2) <---------At4g35610                           <------ZmHOX2a(1) ---->ARR10 <---------HSFB2a(2) --------->At4g35610                       --------->TOE1(2)--------->AHL20(1)   tccttgaggattttctcgtactagacgtggacaaagctgaagcggaagtgatattgggctatagttggctctcaaaactaggagagacataaattaattg  9842900  Previous    Next  AGI:  At5g27790.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G41920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24628.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 9840929    to: 9842007    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g27800.1    Description:  ATP binding / aminoacyl-tRNA ligase/ nucleotide binding. contains InterPro domain Aminoacyl-tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) Range:  from: 9842416    to: 9843808    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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