Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->LBD16                  --------->ANAC58                  --------->ANAC46                  --------->ANAC58                  --------->ANAC55(2)                                                         <------                 ------>ZmHOX2a(2)                                                    <---------MYB52(1)                 <---------LBD16                          --------->ARR14(2)      ------->TEIL-------                 ================================HOX2a_HOX2a                      --------->MYB52(1)   <---------CCA1(2)            <-----------GT1           <---------ARR14(2)     --------->ARR14(2) --->TEIL       <------ZmHOX2a(2)         ========================HOX2a_HOX2a    <---------ARR14(2) >At4g35610     =================================HOX2a_HOX2a------>ZmHOX2a(2)  --------->ANAC58 >ZAT2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         -------->P                --------->ANAC58------ -At4g35610    --------->ARR14(2)         =========================HOX2a_HOX2a <---------MYB52(2)   < -RAV1(2)      <---------ARR14(2)         ------>ZmHOX2a(1)<------ZmHOX2a(2)   --------->ANAC46<-----   accgcatgtctccattcgatccgcaattgctaatttacaatctcctaaatacccttacccgatctgcaattgctattatccacgaaccggtatgctacca  9823300                              ------->TEIL                              --------->ARR14(2)                             <---------CCA1(2)                                                  <----       <---------WOX13(1) ------>ZmHOX2a(2)                                       --------->ARR11(3)     <---------ICU4       ===============HOX2a_HOX2a                              <---------ARR11(3)  --------->YAB1        <---------ARR11(3)                                       --------->GLK1(1) ---MYB55(2)            --------->ARR11(3)                           ----------->GT1  ------>ZmHOX2a(1) -->MYB46(3)   --------->ARR14(2)                     <---------TOE2(3)          <---------GLK1(1) --->AtMYB61   <---------ARR14(2) ------>ZmHOX2a(1) <---------AHL20(2)    --------->ICU4        ----- ---------MYB52(1)   <---------KAN4(2)      <---------ALFIN1         --------->YAB1  --------->TOE2(3) ----ALFIN1  ----------->ARR10<---------ARR14(2)   <---------YAB1  <---------MYB52(1)--------->TOE1(3)   ccgatagtaattgctaatatccgaatgatctgtatcctactgtttcccacatttttaatgtattcttccgatagtaatatttgatatccttagaatggag  9823400              <---------DAG2              <----------DOF2           <---------ALFIN1                                                      ------>ZmHOX2a(2)          <---------ZAT18                                                       <---------GLK1(1)          <---------ZAT14                                                       --------->GLK1(1)          --------->ZAT18                                                       <------ZmHOX2a(2)       --------->SPL7                                        ----------->GT1    --------->At4g35610     <---------SPL7                 <---------ARR14(2)       <---------ANAC55(2)<---------At4g35610   <---------------AtSPL3           --------->ARR14(2)       <---------ANAC46  <---------AGP1   --------------->AtSPL3    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ARR14(2)   - <-----------GT1        <---------CCA1(2)                    <---------ANAC58  <---------ARR14(2)   - -----At4g35610        <---------TOE1(2)             <-----------GT1          <---------CCA1(2)     - ---->At4g35610       <---------AtLEC2------>ZmHOX2a(2)      <---------ANAC58 <---------ARR14(1)    <   atgaaaccgtaccgcactttattcgcatgtctccattcgatctgcaattgctaatttacaatttcgtaaatacccttatcggatctgcgattgctattat  9823500                           <---------------AGL15                           --------------->AGL15                          <-----------------AGL1                      <------ZmHOX2a(2)                     <---------ARR14(2)                     --------->AGP1               <---------MYB55(2)                  <---------WOX13(1)                  --------->ZAT18               --------->MYB46(3)            --------->ARR11(3)                <----------DOF2       --------->ARR14(2)-------->P          <---------ARR11(3)        <-----------GT1 <---------ZAT18  --------->MYB52(1) --------->ARR14(2)     --------->RVE1(1)      <----------DOF2    <---------ANAC58 -------->ANAC58     <-----------ARR10      --------->CCA1(1)      <---------DAG2     <---------ANAC58 -------->ANAC58--------->AtMYB61<---------HSFB2a(2)     <---------ANAC46      <---------DAG2 -------->ANAC46<---------ALFIN1 --------->HSFB2a(2)    ------>ZmHOX2a(2)   <---------ALFIN1        - ---------MYB52(2) --------->DEAR3(1)   --------->AHL20(2)--------->LBD16 <---------ALFIN1<---------ALFIN1   ccacgaacgggtatgctaccaccgatctacccctactggaacttaaatatctgaatgatccgtagaatgctttttcccacacttttttgcgcacacttcg  9823600                                        <------------CBF                                     --------->LBD16                                     ------------>CBF                                    --------->ANAC55(2)                                    --------->ANAC58                                    --------->ANAC46                                    --------->ANAC58          <---------MYB52(1)                 ------>ZmHOX2a(1) ------>ZmHOX2a(2)      --------->MYB52(1)                 =========================HOX2a_HOX2a     ------->TEIL             *TSS                 ========================HOX2a_HOX2a   <---------MYB52(2)       ---------->DOF2     -             <---------ARR11(3)    <-----------------AGL1--------->ARR14(2)     =====================            <---------GLK1(1)      <---------LBD16--------->At4g35610       --------->ANAC46      ---            --------->GLK1(1)      <-----------------AGL3<---------ARR14(2) --------->ANAC58 <------MYB46(1)       <-----------GT1            <------ZmHOX2a(2) ------->GAMYB   --------->WRKY38(1)      <------MYB83   <---------AHL20(1)            <---------ARR14(2) ----------->HVH21       --------->ANAC58--------- ---------->GT1 --------->TOE2(3)--------->ARR14(2)--------->MYB46(3)  --------->ZAT6       <--------   gatagtatatttcgatatcctaaataccattatccgatccgcaattggtatcatccgacgaaccggtatgttgactctaagcaaaagagagggtttggtc  9823700          --------->ALFIN1        <---------ANAC58        <---------ANAC46        <---------TGA1a        --------->TGA1a        <---------ANAC58        =============================bZIP_DOF        <---------bZIP60(2)        =============================bZIP_DOF        <---------O2                                --------->ANAC58                              <--      <---------TGA2(2)                             --------->ANAC58                            -----     ----------->TGA1                        <---------O2                                       -----     ----------->HVH21                       --------->TGA1a                                   ------   ----------->RAV1(2)                       ========================bZIP_DOF                  ------   --------->At4g35610                       <---------TGA1a                                   ------ ---------->HVH21                       ===============bZIP_DOF                               <------ =================bZIP_DOF              ---------->DOF2    --------->DAG2           <-----------GT1 --->ZmHOX2a(1)                >>>>>>>>>>GT-3b      --------->ANAC46             --------->ARR14(2) >MYB59 --------->O2      ---------->DOF2    --------->O2 ---------->DOF2        <---------ARR14(2) -AtMYB61--------->TOE1(2)=============================bZIP_DOF        <------ZmHOX2a(1)  <----------DOF2   ctatgacctgacgtgggaatgtgtaagcgaaagaaaaatagctaaagacgtctcacacaaaaaagctgctagaggaagaagacgattcacttctttcccg  9823800        <---------ARR11(3)        --------->ARR11(3)                     --------->ANAC58    --------->ZAT6             --------->ARR11(3) <-------TEIL <----------DOF2           ---------->DOF2     --------->ANAC58 -------ALFIN1      <---------MYB46(3)    <---------ETT(2) ---->LBD16        --------->ALFIN1       --------->ETT(2)                                --------->GLK1(1) ->NtERF2          <---------DEAR3(1)     <----------ARF1           <---------REM1(2)     <---------GLK1(1) --->ANAC46        <---------AtMYB61  <---------MYB46(3) <------NtERF2                   <---------ARR14(2) --->ANAC58       <---------MYB52(1) <---------ANAC46   --------->RAP2.6(2)              --------->ARR11(3) --->ANAC58      --------->LBD16   <---------ANAC46  --------->ANAC46    <---------ARR11(3) ---LBD16      <---------LBD16 <---------ARR11(3) --------->ZAT14 ----------->HVH21      <---------ARR11(3)   ccactttcactatcttctccggtggtgagcaaagatgttgtgggtcgacaagtacaggccgaaatcactcgacaaggtcatagttcatgaagatatcgcc  9823900                      <----------DOF2                      <---------DAG2                     <---------DAG2                  --------->ANAC58                  --------->ANAC58                 --------->SPL7                                                                    <-             <---------------AtSPL8                                                             <----             <---------------AtSPL3          <---------AHL20(2)                             ------>ZmHOX2a(1)             --------------->AtSPL8          --------->AHL20(2)                      <---------GLK1(2)       --------->ANAC58                     --------->ICU4                       <-----------GT1<----       --------->ANAC58              <---------STY1(1)                    <---------At4g35610   <----   caaaaactcaagaaattggtacgcctttttgttcaaaccctaggtaattttttggaggggttttcgatgaattggaagctaattttcgattctcctctta  9824000                                                   <--------P                                                --------->HSFB2a(2)                                                <---------HSFB2a(2)                                             --------->ARR14(2)                               ------>NtERF2                                             <---------ARR14(2)                              --------                                             --------->GLK1(2)    -------->HAHB4             <-------                                         <-----------RAV1(2)      <---------ICU4             <-------                                        <------NtERF2--------->ANAC58                   --------->CCA1(2)                                        <---------MYB52(1)        --------->YAB1      --------->CCA1(2)           <---------GLK1(2)           <---------RAP2.6(3)       <---------ATHB51    --------->ARR14(2)     --------->ANAC46                  <-----------HVH21         --------->ICU4      <---------ARR14(2)    --------->LBD16                    <---------SPL7--------->ANAC58                <---------ARR11(3) --------GLK1(1)                      --------->ATERF1(2)    ======================================== -----TOE2(2)               <----------DOF2 <---------GLK1(2)<-----------------AGL3  --------->ARR11(3) -----TOE1(2)   --------->ETT(2)      <---------ATERF1(2)   --------->TOE1(3)   --------->ANAC58    - -----TOE2(3)   <---------ZAT18       --------->RAP2.3(3)   --------->TOE2(3)   --------->ANAC58    <   ggtttccgagcaagattgtccacatttgctcttttatgggccgtcaggttctggtaagaaaaccctaattatggctcttctcaagcagatatatggggcc  9824100 ->TCP20 --PCF2                                            ---------->DOF2                         ---------- --PCF5                      --------->TOE2(3)   <---------------AGL15                  --------->ANAC58 ================================================================MADS_MADS            ---------->DOF2 -------->ZAT14    <----------DOF2        <---------YAB1              --------->TOE2(3) --------->ANAC58 ---------ZAT14 ------>ZmHOX2a(1)  --------->ARR11(3)               ------->TEIL<----------DOF2    <-   agtgcagagaaggtaatccttctttcttataccctaatatcgttctgattactaaaagatgaagactttgaaccctaatgttctttagcaaagcaacatt  9824200  Previous    Next  AGI:  At5g27740.1    Description:  EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding. similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39829.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 9823683    to: 9827068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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